RNA Secondary Structure Atlas - PDB - CRWrnafold

2LBS_A	[ FASTA input ]	GGGAUACCAUGUUCAAGUGAACGUGGUAUCUC
	[ reference std structure ]	((((((((((((((....))))))))))))))
	[ reference ext structure ]	((((((((((((((....))))))))))))))
	[ predicted structure ]	((((((((((((((....))))))))))))))
2LC8_A	[ FASTA input ]	GGUCAGGGUCAGGAGCCCCCCCCUGAACCCAGGAUAACCCUCAAAGUCGGGGGGCA
	[ reference std structure ]	.(((.((((((((.[[[[[[[)))).))))..))).............]]]]]]].
	[ reference ext structure ]	.((((((((((((({{{{{.[)))).))))).))).............])}}}}}.                    (                             )
	[ predicted structure ]	.....((((.....))))((((((((....(((.....))).....))))))))..
2LDL_A	[ FASTA input ]	GGAUCCAUUCGAUUAGUGAACGGAUCC
	[ reference std structure ]	((((((.(((.......))).))))))
	[ reference ext structure ]	((((((((((.......))))))))))      (                )
	[ predicted structure ]	((((((..(((.....)))..))))))
2LDT_A	[ FASTA input ]	GGGGAGUACGGCCGCAAGGUUAAAACUCCCC
	[ reference std structure ]	(((((((..((((....))))...)))))))
	[ reference ext structure ]	((((((.(.(((((..))))).).).)))))      (                   )                  (     )                   (                 )
	[ predicted structure ]	(((((((..((((....))))...)))))))
2LHP_A	[ FASTA input ]	GGGUGAAAUGGAGGACUUCGGUCCUCAAAUUUCACCC
	[ reference std structure ]	(((((((((.((((((....))))))..)))))))))
	[ reference ext structure ]	(((((((((.(((((((..)))))))..)))))))))
	[ predicted structure ]	((((((((..((((((....))))))...))))))))
2LI4_A	[ FASTA input ]	GGACCGAUAAGGUAGAAAUGCCUUAUCGGUCC
	[ reference std structure ]	((((((((((((((....))))))))))))))
	[ reference ext structure ]	(((((((((((((((..)))))))))))))))               ( )
	[ predicted structure ]	((((((((((((((....))))))))))))))
2LK3_A	[ FASTA input ]	GGCUUAGAUCAGAAAUGAUCAGCC
	[ reference std structure ]	((((..(((((....)))))))))
	[ reference ext structure ]	((((..((((((..))))))))))
	[ predicted structure ]	((((..(((((....)))))))))
2LKR_A	[ FASTA input ]	GGCAAUACAGAGAUGAUCAGCAGUUCCCCUGCAUAAGGAUGAACCGUUUUACAAAGAGAUUUCUUCGGGAAUCUCUUUGCCUUUUGGCUUAGAUCAAGUGUAGUAUCUGUC
	[ reference std structure ]	((...((.......(((((((..(((.(((.....)))..)))........((((((((((((....)))))))))))).......)))..))))........))....))
	[ reference ext structure ]	((((.(((.....((((((((.((((.((((...))))..)))).......((((((((.((((..))))).))))))).......)))..)))))......)))..))))                                                           (            )                                                                  (              )                                                                                                                                 (          )                                                                                            (                           )
	[ predicted structure ]	......(((((..(((((.((((.....))))...........(((.....((((((((((((....)))))))))))).....)))....))))).........))))).
2LQZ_A	[ FASTA input ]	GGACUUCCAUUGCUUCGGCAAAAGUCC
	[ reference std structure ]	(((((.....(((....)))..)))))
	[ reference ext structure ]	(((((...)(((((..)))))..))))     (                 )
	[ predicted structure ]	((((((...((((....))))))))))
2YIE_Z	[ FASTA input ]	GAUUGAUUUGGUGAAAUUCCAAAACCGACAGUAGAGUCUGGAUGAGAGAAGAUUCG
	[ reference std structure ]	......(((((.......))))).....(((......)))................
	[ reference ext structure ]	....(.((((((...)..)))))..).(((((..)..))))...............
	[ predicted structure ]	.((((..(((((...........))))))))).((((((..........)))))).
2YIE_X	[ FASTA input ]	GAUCUUCGGGGCAGGGUGAAAUUCCCGACCGGUGGUAUAGUCCACGAAUCCAU
	[ reference std structure ]	.............(((.......))).....((((......))))........
	[ reference ext structure ]	.........(.(.((((...)..))))..).(((((..)..))))........             (             )
	[ predicted structure ]	(((..((((((...........))))))...((((......))))..)))...
3AMU_B	[ FASTA input ]	GGGCCCGUAGCUUAGCCAGGUCAGAGCGCCCGGCUCAUAACCGGGCGGUCGAGGGUUCGAAUCCCUCCGGGCCCACCA
	[ reference std structure ]	(((((.(..((((..........)))).((((.........)))).....(((((.......)))))).)))))....
	[ reference ext structure ]	((((((((({{.[)<....(...])}}.((((.........))))....>((((((.).)..))))))))))))....            (            )                                                                             (                       )                                            (        )
	[ predicted structure ]	(((((((..((((....)))).....(((((((.......)))))))...(((((.......))))))))))))....
3J0L_g	[ FASTA input ]	GAACCUGCGGCUUAAUUUGACUCAACACGGG
	[ reference std structure ]	.................((........))..
	[ reference ext structure ]	......(.........[[[......).]].]
	[ predicted structure ]	...((((....................))))
3J0L_a	[ FASTA input ]	GGAGGGCAAGUCAUGGUGCCAGCAGCCGCGGUAAUUCCAGCUCCAAUA
	[ reference std structure ]	.((((....[.[.[[[.....[[..))]].......]]]]])).....
	[ reference ext structure ]	(([[[.())(.(.((((...(((..]])))...)..)))))].)....  (                                        )
	[ predicted structure ]	((((((((........)))).((....))...........))))....
3J0L_8	[ FASTA input ]	GACCGUCGUGAGACAGGUUA
	[ reference std structure ]	(((((((....))).)))).
	[ reference ext structure ]	((((((((..)))).)))).
	[ predicted structure ]	(((((((....))).)))).
3J0L_1	[ FASTA input ]	GAAUGAUUAGAGGUUCCGGGGUCGAAAUGACCUUGACCUAUUCUCAAACU
	[ reference std structure ]	....((..(.(((.(.(.(.(((.....))).).))))).)..)).....
	[ reference ext structure ]	.((((((((.(((.(.(.(((((.....))))).))))).))))))..))          (                              )
	[ predicted structure ]	...(((....((((..((((((((...))))))))))))....)))....
3J0L_h	[ FASTA input ]	CACCGCCCGUCGCUUGUAGUAACGAAUGGUCUGGUGAACCUUCUGGACUGCGACAGCAAUGUUGCGGAAAAAUAAGUAAACCCUACCAUUUGGAACAACAAGAAGUCGUAA
	[ reference std structure ]	.......((.(.(((((.....((((((((..(((..((.(..(...((((((((....))))))))...)..).))..)))..)))))))).....)))))..).))...
	[ reference ext structure ]	.....((((.(((((((....(((((((((((((((((((((((...((((((((....))))))))...)))))))))))))))))))))))....)))))).).)).))                                                 (                 )
	[ predicted structure ]	.......((...(((((.....((((((((..(((..((........((((((((....))))))))........))..)))..)))))))).....)))))....))...
3J0L_7	[ FASTA input ]	GCUUGUGGCAGUCAAGCGUUCAUAGCGACAUUGCUUUUUGAUUCUUCGAU
	[ reference std structure ]	(.(.(.((((.(...((.......))...).))))...)).)........
	[ reference ext structure ]	(((.((((((.(.(((((.....)))))..)))))..)))))........                      (    )                                   (                 )
	[ predicted structure ]	(((((.......)))))......((((....))))..((((....)))).
3J0L_2	[ FASTA input ]	GCCCAGUGCUCUGAAUGUCAAAGUGAAGAAAUUCAACCAAGCGCGGGUAAACGGCGGGAGUAACUAUGACUCUCUUAAGGUAGCCAAAUGCCUCGUCAUCUAAUUAGUGACG
	[ reference std structure ]	(((..((((((.(...((.....((((....)))).....)).)))))..))))).((((.........))).)....................(((((.......))))).
	[ reference ext structure ]	((([.(.((((.(...((....((((((..))))))....)).)))))..]))))(((((.(....)..))).))..........(...().).(((((.......))))).       (                                           )                                                                                                                       (              )
	[ predicted structure ]	((((.(((((.(((((..............)))))....))))))))).......((((((.......))))))...(((((......)))))((((((.......))))))
3J16_L	[ FASTA input ]	UCCGUGAUAGUUUAAUGGUCAGAAUGGGCGCUUGUCGCGUGCCAGAUCGGGGUUCAAUUCCCCGUCGCGGAGCCA
	[ reference std structure ]	(((((((..((((........)))).(((((.......)))))....(((((.......))))))))))))....
	[ reference ext structure ]	(((((((((<<.[)({.{...])>>((((((.(..)..))))))..)((((((}..)}.))))))))))))....            (          )                                                                          (                      )
	[ predicted structure ]	(((((((..((((........)))).(((((.......)))))....(((((.......))))))))))))....
3SD1_A	[ FASTA input ]	GGAGAGUAGAUGAUUCGCGUUAAGUGUGUGUGAAUGGGAUGUCGUCACACAACGAAGCGAGAGCGCGGUGAAUCAUUGCAUCCGCUCCA
	[ reference std structure ]	((((....((((((((((((......(((((((...[[[[....))))))).....((....))))).)))))))))..]]]].)))).
	[ reference ext structure ]	((((((.({{{{{{{{{{{{..{{.{{{{{{{{.[.)((((].)}}}}}}}}.}}.(((..)))}}}.}}}}}}}}}.)))).))))).                                                        (        )                                               (                                           )                                                        (         )                                                                (  )                                                                                                        (                                             )
	[ predicted structure ]	((((.((.((((((((((......(((((((((.(((....))))))))).)))..(((....))).)))))))))))).....)))).
3SN2_B	[ FASTA input ]	GAUUAUCGGAAGCAGUGCCUUCCAUAAUC
	[ reference std structure ]	((((((.((((((...).)))))))))))
	[ reference ext structure ]	((((((.((((((...).)))))))))))
	[ predicted structure ]	((((((.(((((......)))))))))))
3TRZ_Z	[ FASTA input ]	GGGCAGGGAUUUUGCCCGGAG
	[ reference std structure ]	(((((.......)))))....
	[ reference ext structure ]	(((((.......)))))(.).
	[ predicted structure ]	(((((.......)))))....
3TS0_U	[ FASTA input ]	GGGGUAGUGAUUUUACCCUGGAG
	[ reference std structure ]	((((((.......))))))....
	[ reference ext structure ]	((((((.......))))))....
	[ predicted structure ]	((((((.......))))))....
3TS2_V	[ FASTA input ]	GGGGUCUAUGAUACCACCCCGGAG
	[ reference std structure ]	(((((..........)))))....
	[ reference ext structure ]	(((((..........)))))....
	[ predicted structure ]	(((((..........)))))....
3U4M_B	[ FASTA input ]	GGGAUGCGUAGGAUAGGUGGGAGCCUGUGAACCCCCGCCUCCGGGUGGGGGGGAGGCGCCGGUGAAAUACCACCCUUCCC
	[ reference std structure ]	((((.(......(..[[[[[..(((......((((((((....))))))))...)))..........).]]]]]).))))
	[ reference ext structure ]	(((((((..(<.[[){{{{{{{{{{...{{{{{{{{{{....)]}}}}}}}}}}}}}}........>]}}}}}}))))))                       (                                             )                                                  (    )                                                                            (  )                                                    (                                                )                                                                              (     )                                                                           (   )
	[ predicted structure ]	((((.((((...((((((....))))))...((((((((....))))))))....)))).((((......))))..))))
4A1C_2	[ FASTA input ]	AGAAAAUUUUCAACGGUGGAUAUCUAGGUUCCCGUGACGAUGAAGAACGCAGCGAAAUGCGAUACGCAAUGCGAAUUGCAGAACCGCGAGUCAUCAGAUCUUUGAACGCAAGUGGUGGAGGUGUAAAAACCUUCAUGUUUGUUUCAGUGUGGAA
	[ reference std structure ]	............................................((((((.[[.....))).....(.((((.....]]..........).)))..)...)))....((.....))(((((........)))))....................
	[ reference ext structure ]	.......................................(.<((((({((.[[....[).}..)](((((((.((..]]...)....).).)))).))..))))>))((.....))(((((........)))))....................                                                             ()                                                                                                                                      (                                                                )                                                                                                                         (         )                                                                                                                       (          )
	[ predicted structure ]	......((((((((((.((((......)))))))).....)))))).(((.(((...((((((.(((...))).))))))....)))..(((....)))..(((((.((((...((((((((......))))))))..))))))))).)))...
4A1C_3	[ FASTA input ]	GUUGUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUCGAACUCCGAAGUUAAGCGCCUUAAGGCUGGGUUAGUACUAAGGUGGGGGACCGCUUGGGAAGUCCCAGUGUCGAUAGCCU
	[ reference std structure ]	(((((((((....((((((((.....((((((...(....)...))))..))....)))))).))((((((......(((((..((....)).))))).....)))))))))))))))..
	[ reference ext structure ]	((((((((({(.}((((((((....(<(((((...([[..)]].))))...>.).))))))).)))(((((..(.((((((((.(((..))))))))))))..))))).)))))))))..                             (                    )                                                                                                         (         )                                                                                                       (                      )                                                                                                                                       (                                          )                                                    (  )                                                                                                              (           )                                                                                                                                                             (          )                                                              (        )
	[ predicted structure ]	(((((((((.....(((((((.....((((((((......))..))))..))....)))))))..((((((......((.((((((....)))))))).....)))))))))))))))..
4A4U_A	[ FASTA input ]	GGACCCGGCUGACGCUGGGUCC
	[ reference std structure ]	(((((((((....)))))))))
	[ reference ext structure ]	(((((((((....)))))))))
	[ predicted structure ]	(((((((((....)))))))))
4AOB_A	[ FASTA input ]	GGCUUAUCAAGAGAGGGCAAGAGACUGGCUUGAUGACCCCCGGCAACCAAAAAUGGUGCCAAUUCCUGCAGAGGAAACGUUGAAAGAUGAGCCA
	[ reference std structure ]	((((((((....(.(((...(((.[.[[)))......))))(((..(((....))).)))...(]].](((.(....).)))..))))))))).
	[ reference ext structure ]	((((((((..({(.((((.((((.<<<..))...).)))))(})..((((..))))...)...()>>>((((((..))))))..))))))))).                       (                                      )                                                                            (             )                                                                  (                              )                                                     (           )                                                                                   (              )                                                                                      (                                    )                                                                        (               )                                                          (     )
	[ predicted structure ]	((((((((......(((((.(((.....)))..))..))).(((.((((....)))))))..(((((....))))).........)))))))).
4ENB_A	[ FASTA input ]	GGCGAUGAGGCCCGCCCAAACUGCCCUGAAAAGGGCUGAUGGCCUCUACUG
	[ reference std structure ]	((((..[[[[[[))))......(((((....)))))....]]]]]].....
	[ reference ext structure ]	{((((.<<<<<<)).}...)..((((((..))))))).(.>>>>>>)....  (            )
	[ predicted structure ]	......((((((....((....(((((....)))))))..)))))).....
4ENC_A	[ FASTA input ]	GGGCGAUGAGGCCCGCCCAAACUGCCCUGAAAAGGGCUGAUGGCCUCUACUG
	[ reference std structure ]	.((((..[[[[[[))))......(((((....)))))....]]]]]].....
	[ reference ext structure ]	.{((((.<<<<<<)).}...)..((((((..))))))).(.>>>>>>)....   (            )
	[ predicted structure ]	.......((((((....((....(((((....)))))))..)))))).....

• N/A - RNA 2D structure in Vienna format could not have been generated (most likely due to difficult to represent pseudoknot structure). Check secondary structure file for details.
• std - standard base pair definition
• ext - extended base pair definition