 | ||||||||||||||
| ||||||||||||||
 | ||||||||||||||
RNA Secondary Structure Atlas - PDB - Carnac(seed)
| 2KDQ_B | [ FASTA input ] | GGCAGAUCUGAGCCUGGGAGCUCUCUGCC |
| [ reference std structure ] | ((((((...((((......)))))))))) | |
| [ reference ext structure ] |
(((((([..(]((......)).))))))) ( ) |
|
| [ predicted structure ] | ((((((...((((......)))))))))) | |
| 2KE6_A | [ FASTA input ] | GGCUUGAUUGUAUUUUUAAAUUAAUUCUUAAAAACUACAAAUUAAGCC |
| [ reference std structure ] | (((((.(((((((((((((........))))))).))).))).))))) | |
| [ reference ext structure ] | (((((.(((((((((((((.(....).))))))).))).))).))))) | |
| [ predicted structure ] | ................................................ | |
| 2KUR_A | [ FASTA input ] | GGCUUGAUUGUAUUAUUAAAUUAAUUCUUAAUAACUACAAAUUAAGCC |
| [ reference std structure ] | (((((((((((((((((((........))))))).))).))))))))) | |
| [ reference ext structure ] | (((((((((((((((((((((....))))))))).))).))))))))) | |
| [ predicted structure ] | ............(((((((........))))))).............. | |
| 2KUU_A | [ FASTA input ] | GGCUUGAUUGUAUGUGUAAAUUAAUUCUUACACACUACAAAUUAAGCC |
| [ reference std structure ] | (((((.(((((((((((((........))))))).))).))).))))) | |
| [ reference ext structure ] |
(((((.(((((((((((((((....))))))))).))).))).))))) ( ) |
|
| [ predicted structure ] | ............(((((((........))))))).............. | |
| 2KUV_A | [ FASTA input ] | GGCUCGAUUGUAUUUUUAAAUUAAUUCUUAAAAACUACAAAUCGAGCC |
| [ reference std structure ] | (((((((((((((((((((........))))))).))).))))))))) | |
| [ reference ext structure ] |
(((((((((((((((((((((....))))))))).))).))))))))) ( ) |
|
| [ predicted structure ] | (((((((((..............................))))))))) | |
| 2KUW_A | [ FASTA input ] | GGGGUUGGUGUAUUUUUAAAUUAAUUCUUAAAAACUACAAUCAGCUCC |
| [ reference std structure ] | (((((((((((.(((((((........)))))))..)).))))))))) | |
| [ reference ext structure ] |
(((((((((((((((((((.(....).))))))).))).))))))))) ( ) |
|
| [ predicted structure ] | (((((((((..............................))))))))) | |
| 2L1F_A | [ FASTA input ] | GGCGGACCCGUGGUGGAACAGACGUGUUCGGAACACCCGGCCGCAACCCUGGGAGACGUCCCAGG |
| [ reference std structure ] | .((((..(((.(((((((((....)))))....)))))))))))...(((((((....))))))) | |
| [ reference ext structure ] |
.((((.()((.(((((((((....)))))....)))))).))))...(((((((....))))))) ( ) |
|
| [ predicted structure ] | ................................................................. | |
| 2L1F_B | [ FASTA input ] | GGCGGACCCGUGGUGGAACAGACGUGUUCGGAACACCCGGCCGCAACCCUGGGAGACGUCCCAGGG |
| [ reference std structure ] | .((((..(((.(((((((((....)))))....)))))))))))..((((((((....)))))))) | |
| [ reference ext structure ] |
.((((.()((.(((((((((....)))))....)))))).))))..((((((((....)))))))) ( ) |
|
| [ predicted structure ] | .................................................................. | |
| 2L94_A | [ FASTA input ] | GGGAAGAUCUGGCCUUCCCACAAGGGAAGGCCAGGGAAUCUUCCC |
| [ reference std structure ] | ((((((((.((((((((((....))))))))))....)))))))) | |
| [ reference ext structure ] | ((((((((((((((((((((..))))))))))))...)))))))) | |
| [ predicted structure ] | (((((((((((((((((((....)))))))))))...)))))))) | |
| 2LC8_A | [ FASTA input ] | GGUCAGGGUCAGGAGCCCCCCCCUGAACCCAGGAUAACCCUCAAAGUCGGGGGGCA |
| [ reference std structure ] | .(((.((((((((.[[[[[[[)))).))))..))).............]]]]]]]. | |
| [ reference ext structure ] |
.((((((((((((({{{{{.[)))).))))).))).............])}}}}}. ( ) |
|
| [ predicted structure ] | .....((((.................)))).......................... | |
| 2MIY_A | [ FASTA input ] | GCUUGGUGCUUAGCUUCUUUCACCAAGCAUAUUACACGCGGAUAACCGCCAAAGGAGAA |
| [ reference std structure ] | ((((((((.....[[[[[[.)))))))).........(((......)))..]]]]]].. | |
| [ reference ext structure ] |
((((((((.[{..<<<<...)))))))).........(((......)))..]}>>>>.. ( ) ( ) |
|
| [ predicted structure ] | .....................................((((....)))).......... | |
| 2N1Q_A | [ FASTA input ] | GGUGCCCGUCUGUUGUGUGACUCUGGUGAGAGCCAGAGGAGAUCUCUCGACGCAGGACUCGGCUUGCUGGAGACGGCAAGAGGCGAGGGGCGGCGACUGGUGAGUACGCCAAAAAUUUUGACUAGCGGAGGCUAGAAGGAGAGAGAUGGGUGCCC |
| [ reference std structure ] | (((((((((((...((((..(((((((....)))))))...(((..(((.(((....((((.(((((((....)))))))...))))..))).)))..)))....)))).......(((..(((((....)))))..)))...))))))))))). | |
| [ reference ext structure ] | ((((((((((((((((((.(((((((((..)))))))))..((((((((((((((..(((((((((((((..)))))))))..))))))))))))))))))....)))).).....((((((((((....)))))))))).))))))))))))). | |
| [ predicted structure ] | ..............................................................(((((((....)))))))........................................................................... | |
| 2N7M_X | [ FASTA input ] | GGCCUUAUGCACGGGAAAUACGCAUAUCAGUGAGGAUUCGUCCGAGAUUGUGUUUUUGCUGGUGUAAAUCAGCAGUUCCCCUGCAUAAGGCU |
| [ reference std structure ] | (((((((((((.((((...(.(((...(.................)..))).)...((((((......))))))..)))).))))))))))) | |
| [ reference ext structure ] | (((((((((((.(((((..(((((.(.(.....(((....)))..).))))))...(((((((....))))))).))))).))))))))))) | |
| [ predicted structure ] | ............................................................................................ | |
| 2XKV_B | [ FASTA input ] | CUCUGUUGGUUCUCUGUGCUCUGUGCUCUGUUUACCAGGUCAGGUCCGAAAGGAAGCAGCCAAGGCAGAGACGCAGAGCAGGCAGAUGUAGCUGGC |
| [ reference std structure ] | .........(....(....((.......(((......((.....((......)).....))...)))........).)......)....)...... | |
| [ reference ext structure ] |
.........(...(((...(((.....((((......((....(((.(.)..)).)...))...))).).....)).).....)))...)...... ( ) ( ) ( ) |
|
| [ predicted structure ] | ................................................................................................ | |
| 2XXA_G | [ FASTA input ] | GCAUUGCUGGUGCAGCGCAGCGCGGACGCCCGAACCUGGUCAGAGCCGGAAGGCAGCAGCCAUAAGGGAUGCUUUGCGGGUGCCGUUGCCUUCCGGCAAUGC |
| [ reference std structure ] | (.((((((((.((((((((.(((((((((((.....((((....(((....)))....))))...))).)).))))))..)).))))))...)))))))).) | |
| [ reference ext structure ] |
((((((((((.((((((((((((((((((((((...((((...(((((..)))))...))))).))).))).))))))).)).))))))...)))))))))) ( ) |
|
| [ predicted structure ] | ...................................................................................................... | |
| 3A3A_A | [ FASTA input ] | GCCCGGAUGAUCCUCAGUGGUCUGGGGUGCAGGCUUCAAACCUGUAGCUGUCUAGCGACAGAGUGGUUCAAUUCCACCUUUCGGGC |
| [ reference std structure ] | (((((((.(..((((([..(.])))))((((((.......)))))).(((((....))))).((((..)....))))).))))))) | |
| [ reference ext structure ] |
(((((((((..(((((({[{.))))))(((((((..)...))))))((((((....))))))(((((]}.)}.))))))))))))) () |
|
| [ predicted structure ] | ...................................................................................... | |
| 3GX2_A | [ FASTA input ] | GGCUUAUCAAGAGAGGUGGAGGGACUGGCCCGACGAAACCCGGCAACCAGAAAUGGUGCCAAUUCCUGCAGCGGAAACGUUGAAAGAUGAGCCG |
| [ reference std structure ] | ((((((((......(((...(((...[[)))......))).(((..(((....))).)))...(]]..(((((....)))))..))))))))). | |
| [ reference ext structure ] |
((((((((..({(.((((.((((.<<<<.))...).)))))(})..((((..))))...).).(>>>>((((((..))))))..))))))))). ( ) ( ) ( ) ( ) ( ) |
|
| [ predicted structure ] | .............................................................................................. | |
| 3IVN_B | [ FASTA input ] | GGCCAGUAUAACCUCAAUGAUAUGGUUUGAGGGUGUCUACCAGGAACCGUAAAAUCCUGACUACUGGUC |
| [ reference std structure ] | (((((((({..((((((......[[.))))))(.....})(((((.]]......)))))..)))))))) | |
| [ reference ext structure ] |
(((((((([(.(((((((.{{..{{)))))))).(...].(((((.}}().}}.))))).))))))))) ( ) ( ) ( ) |
|
| [ predicted structure ] | ..................................................................... | |
| 3IZF_C | [ FASTA input ] | GGUUGCGGCCAUAUCUACCAGAAAGCACCGUUUCCCGUCCGAUCAACUGUGUUAAGCUGGUAGAGCCUGACCGAGUAGUGUAUGGGUGACCAUACGCGAAACUCAGGUGCUGCAAUCU |
| [ reference std structure ] | (((((((((....(((((((......((.(((...(....)...)))...)).....))))))).(((((.......((((((((....)))))))).....))))).))))))))). | |
| [ reference ext structure ] |
(((((((((....((((((((....(((.(((...[(...].).)))...)))...)))))))).((((((((.()((((((((((..)))))))))).)))))))).))))))))). ( ) ( ) ( ) ( ) ( ) ( ) ( ) ( ) ( ) ( ) |
|
| [ predicted structure ] | ...................................................................................................................... | |
| 3J20_2 | [ FASTA input ] | AUUCCGGUUGAUCCUGCCGGAGGCCACUGCUAUGGGGGUCCGACUAAGCCAUGCGAGUCAAGGGGGCGUCCCUUCUGGGACGCCACCGGCGGACGGCUCAGUAACACGUCGGUAACCUACCCUCGGGAGGGGGAUAACCCCGGGAAACUGGGGCUAAUCCCCCAUAGGCCUGGGGUACUGGAAGGUCCCCAGGCCGAAAGGGAGCCGUAAGGCCCGCCCGAGGAUGCGGCGGCGGCCGAUUAGGUAGUUGGUGGGGUAACGGCCCACCAAGCCGAAGAUCGGUACGGGCCGUGAGAGCGGGAGCCCGGAGAUGGACACUGAGACACGGGUCCAGGCCCUACGGGGCGCAGCAGGCGCGAAACCUCCGCAAUGCGGGAAACCGCGACGGGGGGACCCCCAGUGCCGUGCCUCUGGCACGGCUUUUCCGGAGUGUAAAAAGCUCCGGGAAUAAGGGCUGGGCAAGGCCGGUGGCAGCCGCCGCGGUAAUACCGGCGGCCCGAGUGGUGGCCACUAUUAUUGGGCCUAAAGCGGCCGUAGCCGGGCCCGUAAGUCCCUGGCGAAAUCCCACGGCUCAACCGUGGGGCUCGCUGGGGAUACUGCGGGCCUUGGGACCGGGAGAGGCCGGGGGUACCCCCGGGGUAGGGGUGAAAUCCUAUAAUCCCGGGGGGACCGCCAGUGGCGAAGGCGCCCGGCUGGAACGGGUCCGACGGUGAGCGCGGAAGGCCAGGGGAGCGAACCGGAUUAGAUACCCGGGUAGUCCUGGCUGUAAAGGAUGCGGGCUAGGUGUCGGGCGAGCUUCGAGCUCGCCCGGUGCCGUAGGGAAGCCGUUAAGCCCGCCGCCUGGGGAGUACGGCCGCAAGGCUGAAACUUAAAGGAAUUGGCGGGGGAGCACUACAAGGGGUGGAGCGUGCGGUUUAAUUGGAUUCAACGCCGGGAACCUCACCGGGGGCGACGGCAGGAUGAAGGCCAGGCUGAAGGUCUUGCCGGACGCGCCGAGAGGAGGUGCAUGGCCGCCGUCAGCUCGUACCGUGAGGCGUCCACUUAAGUGUGGUAACGAGCGAGACCCGCGCCCCCAGUUGCCAGUCCCUCCCGCUCGGGAGGAGGCACUCUGGGGGGACUGCCGGCGAUAAGCCGGAGGAAGGGGCGGGCGACGGUAGGUCAGUAUGCCCCGAAACCCCCGGGCUACACGCGCGCUACAAUGGGCGGGACAAUGGGACCCGACCUCGAAAGGGGAAGGGAAUCCCCUAAACCCGCCCUCAGUUCGGAUCGCGGGCUGCAACUCGCCCGCGUGAAGCUGGAAUCCCUAGUACCCGCGUGUCAUCAUCGCGCGGCGAAUACGUCCCUGCUCCUUGCACACACCGCCCGUCACUCCACCCGAGCGGAGUCCGGGUGAGGCCUGAUCUCCUUCGGGAGGUCAGGUCGAGCCCGGGCUCCGUGAGGGGGGAGAAGUCGUAACAAGGUAACCGUAGGGGAACCUACGGCUCGAUCACCUCCU |
| [ reference std structure ] | ...(((...<.<<<...))).(((((((((....((((.(((......((.(((..(((..(..((((((((....))))))))..))))......(((.......(((((.(...(...(((((((.((((......((.((....)).)).......))))...(((((((((.(((....))))))))))))....((..(((....))))).)))))))..).).))))).(((....(((...((((((.........)))))).)))......)))..((((((((....))))...))))))).(((((............))))).((((....))))...)))))..).....(.(((....((((....))))..)))).))..))))...((((.(((...))).))))....(((((((.......)))))))......(((((((.....[[[[[.....[...)).].......]]]]])))))..)))))))))..........(((((...a..((....(((..((((((.(((((((((.....((((((((.....))))))))....)))))))..))))))))...(((((((.....((((((.(...((((((((...((........))......))))))))...).......((....))..))))))....))).)))..))))....)).....((((((...((...((((.........))))...))))))))......{...{{{{{{..(((((((((.((((.....)))).)))))))))...{{..))}}.....}}}}}}A))).(((......((((....))))....)))...>>>.>(((((.(((((((..((.((((((..(((((((.((......((........))..........(((((((...((((.(......(((.((((.....)))).)))...)..))))...(..(((...((((((((....((((((.((....))....(((......)))...)))))).....((((.((((((..........((((((....))))))........)))))).....(((((.....)))))........)))).....))).)))...)).))).)....)))))))...))..))))))).(...((((((......(((..((..((((....))))..))....)))......))))))......(....(((((((........)))))))....)..)..)))))).....((((((.........)))))).......))...)))))))))).))..(.(..((.(.((((...(..(.(((((((((((..((((((((((((....))))))))))))..))))))))))).)..)...))))..).))...)..)..(.(.(((((....))))).).)}........... | |
| [ reference ext structure ] | N/A | |
| [ predicted structure ] | ..((((((.......))))))((((((((((.(((((((((....................(((((((((((....))))))))))).................................(((((((.(((((((..((((((....))))))...)))))))...(((((((((...........)))))))))........(((....)))...)))))))...........(((((((......((((((((.......))))))))......))))))).((((((((....))))...))))....(((((............))))).....................................(((((....)))))......)))))))))..((((((((...)))))))).((((((((((.......))))))))))...((((((...................................)))))).))))))))))..............................................................................................................(((((((.............................................................)))))))...........................((((((((.......((((.........))))....)))))))).........(((((((.(((((((((((((((...)))))))))))))))...............))))))).............(((((....)))))...................((((((((.............((((((((..............................(((((((...((((........(((((((((...)))))))))......)))).............................((((((.......((((......))))............(((((.(((((((.........((((((....)))))).......))))))).....(((((.....)))))........)))))..))))))..................)))))))......)))))))).....(((((((..........................................))))))).......................................................................................)))))))).................((((((((..(((((((((((((..((((((((((((....))))))))))))..)))))))))))))..)))))))).................(((((((....))))))).............. | |
| 3J3E_8 | [ FASTA input ] | AACUCUAAGCGGUGGAUCACUCGGCUCAUGGGUCGAUGAAGAACGCAGCAAACUGUGCGUCAUCGUGUGAACUGCAGGACACAUGAACAUCGACAUUUUGAACGCAUAUCGCAGUCCAUGCUG |
| [ reference std structure ] | ........................................((((((.[[.....))).....(.((((.....]]...........))))..)...)))....((.....))........... | |
| [ reference ext structure ] |
..................................().<((((((((.{{(.).{))).[.}(].(((..(((.}}).)......).).))....).))))>).((.....))........... ( ) ( ) ( ) ( ) () () ( ) ( ) ( ) |
|
| [ predicted structure ] | ........................................................................................................................... | |
| 3J3F_8 | [ FASTA input ] | CGACUCUUAGCGGUGGAUCACUCGGCUCGUGCGUCGAUGAAGAACGCAGCUAGCUGCGAGAAUUAAUGUGAAUUGCAGGACACAUUGAUCAUCGACACUUCGAACGCACUUGCGGCCCCGGGUUCCUCCCGGGGCUACGCCUGUCUGAGCGUCGCUU |
| [ reference std structure ] | ..........................................((.((.[[.....))......(.(((......]].............)))..)...)).....((....))(((((.((.......)).)))))..................... | |
| [ reference ext structure ] |
....................................(.{(((((.((.[[....[))).(.].(((((.(((..]].)........)).)))).))...)))}))((....))(((((((((.....)))))))))..................... () ( ) ( ) ( ) |
|
| [ predicted structure ] | ............................................................................................................................................................. | |
| 3JB9_N | [ FASTA input ] | GAUCUUCGGAUCACUUUGGUCAAAUUGAAACGAUACAGAGAAGAUUAGCAUGGCCCCUGCACAAGGAUGACACUGCGACAUUGAGAGAAA |
| [ reference std structure ] | .(........)........................................(..((((.....)))..).)................... | |
| [ reference ext structure ] | ((((....))))...........................((.....))(.[[[.[(((.....))).)]]]].................. | |
| [ predicted structure ] | .......................................................................................... | |
| 3JB9_C | [ FASTA input ] | CGUCAAAGCACUUUGCAAAAGCUAACGUAUCUGUUUCUUGCCUUUUACCAGAAACAGCCGUUUGUAAGGUGUGCUAAUUUGACUGUAUAGUUUUUGUAAUCUUUU |
| [ reference std structure ] | (((((((((((((((((((......((...((((((((...........)))))))).)))))))))))))).....)))))).).................... | |
| [ reference ext structure ] |
(((((((((((((((((((......((...((((((((((.......)))))))))).)))))))))))))).....)))))).).................... () |
|
| [ predicted structure ] | ......................................................................................................... | |
| 3JYX_3 | [ FASTA input ] | GGUUGCGGCCAUAUCUACCAGAAAGCACCGUUUCCCGUCCGAUCAACUGUGUUAAGCUGUAGAGCCGACAGUAGUGUAGGGUGACCAUACGCGAAACUCAGGUGCUGCAAUCU |
| [ reference std structure ] | (((((((......((..........(.........(....).........)..........)).(.........(..(..(...)..)..).........)....))))))). | |
| [ reference ext structure ] |
((((((((.....([.....((..)(((.......{(...})......)))...)....(.])((.......(((.((..(...)..)).))).......))).)))))))). ( ) |
|
| [ predicted structure ] | ................................................................................................................. | |
| 3JYX_4 | [ FASTA input ] | AAACUUUCAACAACGGAUCUCUUGGUUCUCGCAUCGAUGAAGAACGCAGCGAAAUGCGAUACGUAAUGUAGGUUGCAGAAUUCCGUGAAUCAUCGAUCUUUGAACGCACAUUGCGCCCCUUGGUAUUCCAGGGGGCAUGCCUGUUUGAGCGUCAUUU |
| [ reference std structure ] | ..........................................(.(((........))).......(..........................)......)................(((((((....)))))))....................... | |
| [ reference ext structure ] |
.(..)..............................().<((((({(([.....[.).}..)..(.(((.((..]].......))......))).)...))))>)...(....)...((((((((..))))))))....................... ( ) ( ) ( ) ( ) ( ) |
|
| [ predicted structure ] | ............................................................................................................................................................. | |
| 3LA5_A | [ FASTA input ] | GGCUUCAUAUAAUCCGAAUGAUAUGGUUUCGGAGCUUCCACCAAGAGCCUUAAACUCUUGACUAUGGAGUC |
| [ reference std structure ] | ((((((((([..((((((......{{.))))))(.....])((((((}}.....))))))..))))))))) | |
| [ reference ext structure ] |
(((((((((((.(((((((.[[[.[[)))))))).....).((((((]]..]]]))))))..))))))))) ( ) ( ) ( ) ( ) ( ) |
|
| [ predicted structure ] | ....................................................................... | |
| 3NPB_A | [ FASTA input ] | GUUCUUAUCAAGAGAAGCAGAGGGACUGGCCCGACGAAGCUUCAGCAACCGGUGUAAUGGCGAAAGCCAUGACCAAGGUGCUAAAUCCAGCAAGCUCGAACAGCUUGGAAGAUAAGAAC |
| [ reference std structure ] | (((((((((....(((((...(((.[[[[)))......))))).((..(((((...((((......)))).)))..)).))....(]]]]((.((.......)).))..)))))))))) | |
| [ reference ext structure ] |
(((((((((..(((((((.()(((.[[[[)))......))))).)).()(((((..((((((..))))))))))..)........(]]]]((.((.......)).))..)))))))))) ( ) ( ) ( ) ( ) ( ) |
|
| [ predicted structure ] | ....................................................................................................................... | |
| 3O58_2 | [ FASTA input ] | GGUUGCGGCCAUAUCUACCAGAAAGCACCGUUUCCCGUCCGAUCAACUGUAGUUAAGCUGGUAAGAGCCUGACCGAGUAGUGUAGUGGGUGACCAUACGCGAAACUCAGGUGCUGCAAUCU |
| [ reference std structure ] | (((((((((....((((((((.....((.......................))....)))))).)).(((((.......(((((..((....)).))))).....))))).))))))))). | |
| [ reference ext structure ] |
(((((((((....((((((((....({((........[...(.]..)....)}.).))))))).)).(((((......(((((((.((....)))))))))....))))).))))))))). ( ) |
|
| [ predicted structure ] | ......................................................................................................................... | |
| 3O58_3 | [ FASTA input ] | AAACUUUCAACAACGGAUCUCUUGGUUCUCGCAUCGAUGAAGAACGCAGCGAAAUGCGAUACGUAAUGUGAAUUGCAGAAUUCCGUGAAUCAUCGAAUCUUUGAACGCACAUUGCGCCCCUUGGUAUUCCAGGGGGCAUGCCUGUUUGAGCGUCAUUU |
| [ reference std structure ] | .........................................((((([..(.....]))....((..((.........)............))...).).)))....(((...))).((((((((....))))))))...................... | |
| [ reference ext structure ] |
....................................(.{((((([((.<<....<).]..)>((.(.(.........>.>..........))...))..))))}))(((...)))(((((((((....)))))))))..................... () ( ) ( ) ( ) ( ) ( ) |
|
| [ predicted structure ] | .............................................................................................................................................................. | |
| 3PDR_A | [ FASTA input ] | GGGCUUCGUUAGGUGAGGCUCCUGUAUGGAGAUACGCUGCUGCCCAAAAAUGUCCAAAGACGCCAAUGGGUCAACAGAAAUCAUCGACAUAAGGUGAUUUUUAAUGCAGCUGGAUGCUUGUCCUAUGCCAUACAGUGCUAAAGCUCUACGAUUGAAGCCCA |
| [ reference std structure ] | ((((((((((.[[[..[[[..[[[[[[[[......[[[[[[(((((....((((....))))....))))).....[[[[[[[[[......)]]]]]]]]]..].]]]]].((........))....]]]]]]]].]]]...]]]..))....))))))). | |
| [ reference ext structure ] |
(((((((([(.<<<<<<<<<.<<<<<<<<<a(.A.<<<<<<[[[[[[...[[[[..)(]]]]...]]]]]].{...{{{{{{{{b.{...))B}}}}}}}}}.>.>>>>>(((........)))).>>>>>>>>>>>>>>.>>>>..].().}))))))). ( ) () ( ) ( ) ( ) ( ) ( ) ( ) ( ) ( ) |
|
| [ predicted structure ] | ................................................................................................................................................................. | |
| 3RKF_A | [ FASTA input ] | GGCCAUAUAACUGCGUGGAUAUAGCACGCAGGUUUCUACCGGGCACUGUAAAUGUCCGACUAUGGUC |
| [ reference std structure ] | ((((((([..(((((((.....{{)))))))(.....])((((((}}.....))))))..))))))) | |
| [ reference ext structure ] |
(((((((((.(((((((.[[[.[[)))))))).....).((((((]]()]]]))))))..))))))) ( ) ( ) ( ) ( ) ( ) ( ) |
|
| [ predicted structure ] | ................................................................... | |
| 3SD1_A | [ FASTA input ] | GGAGAGUAGAUGAUUCGCGUUAAGUGUGUGUGAAUGGGAUGUCGUCACACAACGAAGCGAGAGCGCGGUGAAUCAUUGCAUCCGCUCCA |
| [ reference std structure ] | ((((....((((((((((((......(((((((...[[[[....))))))).....((....))))).)))))))))..]]]].)))). | |
| [ reference ext structure ] |
((((((.({{{{{{{{{{{{..{{.{{{{{{{{.[.)((((].)}}}}}}}}.}}.(((..)))}}}.}}}}}}}}}.)))).))))). ( ) ( ) ( ) ( ) ( ) |
|
| [ predicted structure ] | ......................................................................................... | |
| 3W1K_J | [ FASTA input ] | GGGAGUAGAUAGGCGCUGGUGUGCCUCCUAGACUUCAAAUCUACGGUCUCGCUAUUUAAGCGAGAGGUGGGUUCGAUUCCCACAUACUCCCG |
| [ reference std structure ] | (((((((....(((((..[.))))).((((((.......)))).))(((((((.....))))))).{{{{{..]....}}}}}.))))))). | |
| [ reference ext structure ] |
((((((((...((((([[{.))))).(((((((.....))))).))((((((((...)))))))).<<<<<<]}.>].>>>>>)))))))). ( ) |
|
| [ predicted structure ] | ............................................................................................ | |
| 3W3S_B | [ FASTA input ] | GGGAGAGGUUGGCCGGCUGGUGCCGCCCCGGGACUUCAAAUCCCGUGGGAGGUCCCGCAAGGGAGCUCCGGAGGGUUCGAUUCCCUCCCUCUCCCGCC |
| [ reference std structure ] | (((.((((..((.((([..(.])))))((((((.......))))).)((((.((((....)))).)))).(((((..)....))))))))).)))... | |
| [ reference ext structure ] |
(((.((((..((.(((([[()))))))((((((.......))))).)((((((((((..)))))))))).((((((]..)].))))))))).)))... ( ) ( ) |
|
| [ predicted structure ] | .................................................................................................. | |
| 3ZEX_C | [ FASTA input ] | AACGUGUCGCGAUGGAUGACUUGGCUUCCUAUUUCGUUGAAGAACGCAGCAAAGUGCGAUAAGUGGUAUCAAUUGCAGAAUCAUUUCAUUGCCCAAUCUUUGAACGCAAACGGCGCAUGGGAGAAGCUCUCUCGAGCCAUCCCCGUGCAUGCCACAUUUCUCAGUGUCG |
| [ reference std structure ] | .........................................((((((.[[.....)))....(((((((...(.]].).........).)))).).).)))....((.....))(((((.(.(..((((....))))..).).)))))..................... | |
| [ reference ext structure ] |
...................................[(..(.(((.((.{.(.){.)))(..}((((((..((..}..).......).)..))).))..))))].)(((..).))(((((((((.(((((....))))).)))))))))..................... ( ) () ( ) ( ) ( ) ( ) ( ) ( ) ( ) ( ) ( ) ( ) ( ) ( ) ( ) |
|
| [ predicted structure ] | ......................................................................................................................................................................... | |
| 4A1C_2 | [ FASTA input ] | AGAAAAUUUUCAACGGUGGAUAUCUAGGUUCCCGUGACGAUGAAGAACGCAGCGAAAUGCGAUACGCAAUGCGAAUUGCAGAACCGCGAGUCAUCAGAUCUUUGAACGCAAGUGGUGGAGGUGUAAAAACCUUCAUGUUUGUUUCAGUGUGGAA |
| [ reference std structure ] | ............................................((((((.[[.....))).....(.((((.....]]..........).)))..)...)))....((.....))(((((........))))).................... | |
| [ reference ext structure ] |
.......................................(.<((((({((.[[....[).}..)](((((((.((..]]...)....).).)))).))..))))>))((.....))(((((........))))).................... () ( ) ( ) ( ) |
|
| [ predicted structure ] | .......................................................................................................................................................... | |
| 4A1C_3 | [ FASTA input ] | GUUGUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUCGAACUCCGAAGUUAAGCGCCUUAAGGCUGGGUUAGUACUAAGGUGGGGGACCGCUUGGGAAGUCCCAGUGUCGAUAGCCU |
| [ reference std structure ] | (((((((((....((((((((.....((((((...(....)...))))..))....)))))).))((((((......(((((..((....)).))))).....))))))))))))))).. | |
| [ reference ext structure ] |
((((((((({(.}((((((((....(<(((((...([[..)]].))))...>.).))))))).)))(((((..(.((((((((.(((..))))))))))))..))))).))))))))).. ( ) ( ) ( ) ( ) ( ) ( ) ( ) ( ) |
|
| [ predicted structure ] | ........................................................................................................................ | |
| 4AOB_A | [ FASTA input ] | GGCUUAUCAAGAGAGGGCAAGAGACUGGCUUGAUGACCCCCGGCAACCAAAAAUGGUGCCAAUUCCUGCAGAGGAAACGUUGAAAGAUGAGCCA |
| [ reference std structure ] | ((((((((....(.(((...(((.[.[[)))......))))(((..(((....))).)))...(]].](((.(....).)))..))))))))). | |
| [ reference ext structure ] |
((((((((..({(.((((.((((.<<<..))...).)))))(})..((((..))))...)...()>>>((((((..))))))..))))))))). ( ) ( ) ( ) ( ) ( ) ( ) ( ) ( ) |
|
| [ predicted structure ] | .............................................................................................. | |
| 4BY9_A | [ FASTA input ] | GCGAGCAAUGAUGAGUGAUGGGCGAACUGAGCUCGAAAGAGCAAUGAUGAGUGAUGGGCGAACUGAGCUCGC |
| [ reference std structure ] | ((((((....................(...((((....))))......).................)))))) | |
| [ reference ext structure ] |
((((((...((((.............(((((((((..)))))...)))).............)))))))))) ( ) |
|
| [ predicted structure ] | ........................................................................ | |
| 4C4Q_N | [ FASTA input ] | GACUAGCCGUAGUGGCGAGCUCCCUGGGUGGUCUAAGUCCUGAGUACAGGACAGUCGUCAGUAGUUCGACGUGAGCACUAGCCCACCUCGAGAUGCUACGUGGACGAGGGCAUGCCCAAGACACACCUUAACCCUGGCGGGGGUCGCUAGGGUGAAAUCACAUUAUGUGAUGGGGGUACGACCUGAUAGGGUGCUGCAGAGGCCCACUAGCAGGCUAGUAUAAAAAUCUCUGC |
| [ reference std structure ] | .(((((((.((((((((.((((((.(((((((((..((((((....))))))..(((((..((((((((.(((.((....)).))).))))...))))....)))))(((....))).)))).)))))..((((((((((...))))))))))....(((((...))))).)))))).)).(((....))).((..[[[[.))))))))...))))))).........]]]]. | |
| [ reference ext structure ] |
.(((((((.((((((((.((((((.(((((((((..((((((....))))))..(((((.(((((((((.(((((((..))))))).))))...)))))...)))))(((....))).))))).))))..((((((((((...))))))))))....(((((...))))).)))))).))(((((..)))))((..[[[[[))))))))...)))))))........]]]]]. ( ) ( ) ( ) ( ) |
|
| [ predicted structure ] | .........((((((...((((((.(((((......((((((....))))))........(((((((((((((..........)))))))))...))))........................)))))..((((((((((...))))))))))...((((((...))))))))))))..........................))))))........................ | |
| 4ENB_A | [ FASTA input ] | GGCGAUGAGGCCCGCCCAAACUGCCCUGAAAAGGGCUGAUGGCCUCUACUG |
| [ reference std structure ] | ((((..[[[[[[))))......(((((....)))))....]]]]]]..... | |
| [ reference ext structure ] |
{((((.<<<<<<)).}...)..((((((..))))))).(.>>>>>>).... ( ) |
|
| [ predicted structure ] | ................................................... | |
| 4ENC_A | [ FASTA input ] | GGGCGAUGAGGCCCGCCCAAACUGCCCUGAAAAGGGCUGAUGGCCUCUACUG |
| [ reference std structure ] | .((((..[[[[[[))))......(((((....)))))....]]]]]]..... | |
| [ reference ext structure ] |
.{((((.<<<<<<)).}...)..((((((..))))))).(.>>>>>>).... ( ) |
|
| [ predicted structure ] | .................................................... | |
| 4FRG_B | [ FASTA input ] | GGCCUAAAAGCAUAGUGGGAAAGUGACGUGAAAUUCGUCCAGAUGCGAAAGCAUACGGUUAUACUCCGAAUGCCACCUAGGCCA |
| [ reference std structure ] | ((((((........((((....(.((((.......)))))((((((....)))).[[[.....))]]]....)))).)))))). | |
| [ reference ext structure ] |
((((((...{(.}.((((...<(.(((([(..]..)))))(>(((((..)))))(((((.).).)))))..))))).)))))). ( ) |
|
| [ predicted structure ] | .................................................................................... | |
| 4FRN_A | [ FASTA input ] | GGGCUAAAAGCAUGGUGGGAAAGUGACGUGUAAUUCGUCCACAUUACUUGAUACGGUUAUACUCCGAAUGCCACCUAGCCCAAAGUAGAGCAAGGAGACUCA |
| [ reference std structure ] | .(((((.......(((((....(.((((.......)))))(.(([.[[[.)).{{{......)}}}....)))))))))).......(((.]]]...]))). | |
| [ reference ext structure ] |
.(((((...{(.}(((((....(.(((([(..]..)))))(.(.<.<<<<).aaaa(.).).)AAAA..))))))))))).......(((>>>>...>))). ( ) ( ) |
|
| [ predicted structure ] | ...................................................................................................... | |
| 4JF2_A | [ FASTA input ] | GAACCGCGAAAGCGGUUCCACGACGAUACUUAUUUCCUUUGAUCGUCGUUAUUACUGGCUUCGGCCACAAAGGAGA |
| [ reference std structure ] | (((((((....))))))).((((((((.......[[[[[..))))))))......((((....))))..]]]]].. | |
| [ reference ext structure ] |
((((((((..)))))))).(((((((((.((...<<<...)))))))))....(.(((((..)))))).))>>>.. ( ) ( ) ( ) |
|
| [ predicted structure ] | (((((((....))))))).((((((((..............))))))))......((((....))))......... | |
| 4LCK_F | [ FASTA input ] | GGGUGCGAUGAGAAGAAGAGUAUUAAGGAUUUACUAUGAUUAGCGACUCUAGGAUAGUGAAAGCUAGAGGAUAGUAACCUUAAGAAGGCACUUCGAGCACCC |
| [ reference std structure ] | ((((((.....((.........(..(.(...(.((.(......(..[[[[[...........).]]]]].).)).).).)..).........))..)))))) | |
| [ reference ext structure ] |
((((((...(.((.....(.(((..(((..((.(((((....([([{{{{{{....).]..)]}}}}}}))))).)))))..))))......)).))))))) ( ) ( ) ( ) |
|
| [ predicted structure ] | ...................................................................................................... | |
| 4MGN_C | [ FASTA input ] | GAAUCAAUAGUAGUUAACCCUCUCUUCCGAAGCGAGCCGGGGGCGGUGGGAGCCCGGUGAAGACGGUUAAUGAAACGGCAGUUCC |
| [ reference std structure ] | (((.........(((((((...(((((.....(..[[[[[[..........)]]]]]]))))).)))))))..........))). | |
| [ reference ext structure ] |
(((.....(.(((((((((...(((((....([([{{{{{{....).]..)]}}}}}}))))).)))))))))).......))). ( ) |
|
| [ predicted structure ] | ..................................................................................... | |
| 4P5J_A | [ FASTA input ] | AGCUCGCCAGUUAGCGAGGUCUGUCUCGACACGACAGAUAAUCGGGUGCAACUCCCGCCCCUCUUCCGAGGGUCAUCGGAACC |
| [ reference std structure ] | .((((((..[...)))))(((((((.......)))))))...{{{{..]....}}}}(((...{{{{{{))).).}}}}}}.. | |
| [ reference ext structure ] |
.(((((([[()..)))))(((((((.......)))))))...{{{{{]..}].}}}}(((..{{{{{{{))).).}}}}}}.} () ( ) ( ) |
|
| [ predicted structure ] | ..(((((......)))))(((((((.......)))))))...((((.......))))......((((((......)))))).. | |
| 4P8Z_A | [ FASTA input ] | GGUUGGGUUGGGAAGUAUCAUGGCUAAUCACCAUGAUGCAAUCGGGUUGAACACUUAAUUGGGUUAAAACGGUGGGGGACGAUCCCGUAACAUCCGUCCUAACGGCGACAGACUGCACGGCCCUGCCUCUUAGGUGUGUCCAAUGAACAGUCGUUCCGAAAGGAAGCAUCCGGUAUCCCAAGACAAUC |
| [ reference std structure ] | (((((..(((((..(((((((((...[[[.)))))))))..{{{{.{{{.{{{{......{{{{{...{{{{..{{{...]]]}}}.......}}}}((....)).....<<<<<...}}}}}.(((.....)))}}}}.}}}....>>>>>.((((....))))....}}}}...)))))..))))) | |
| [ reference ext structure ] |
((((((((((((..(((((((((...[.[.))))))))).{<<<<<<<<<<<<<(..<)<<<<<<.<.<<<<a.aaa...]].AAA...>.A..>>>aa...>AA....aaaaaa.()>>>>>>a.(.....)>A>>>>>>>>>.}.AAAAA.(((((..)))))..A.>>>>...)))))))))))) ( ) ( ) ( ) ( ) ( ) ( ) ( ) ( ) |
|
| [ predicted structure ] | .......................................(((((((((((....)))))))))))........................................................................................((((....))))....................... | |
| 4QK8_A | [ FASTA input ] | GUUGCCGAAUCCGAAAGGUACGGAGGAACCGCUUUUUGGGGUUAAUCUGCAGUGAAGCUGCAGUAGGGAUACCUUCUGUCCCGCACCCGACAGCUAACUCCGGAGGCAAUAAAGGAAGGA |
| [ reference std structure ] | ..((((....((....))..(((((....(.....(.[((((....((((((.....))))))..(((((.{{{{{{)))))..)))).)].)....)))))..)))).....}}}}}}. | |
| [ reference ext structure ] |
..((((((.((((..))))[.(((((..((.....(.[((((.(.(((((((.....)))))))[)((((.{{{{{{)))).].)))).)].))..))))))]))))).....}}}}}}. ( ) ( ) ( ) ( ) ( ) ( ) |
|
| [ predicted structure ] | ........................................................................................................................ | |
| 4TZY_X | [ FASTA input ] | GGGAAGAUAUAAUCCUAAUGAUAUGGUUUGGGAGUUUCUACCAAGAGCCUUAAACUCUUGAUUAUCUUCCC |
| [ reference std structure ] | ((((((((((..((((((......[[.))))))[.....)]{{{{{{]].....}}}}}}..))))))))) | |
| [ reference ext structure ] |
(((((((((((.(((((((.[[..[[)))))))).....).{{{{{{]]...]]}}}}}}..))))))))) ( ) ( ) ( ) ( ) ( ) |
|
| [ predicted structure ] | ....................................................................... | |
| 4UE4_A | [ FASTA input ] | GCCGUGCUAAGCGGGGAGGUAGCGGUGCCCUGUACCUGCAAUCCGCUCUAGCAGGGCCGAAUCCCUUCUCGAGGUUCGUUUACUUUAAGGCCUGCCUUAAGUAAGUGGUGUUGACGUUUGGGUCCUGCGCAAUGGGAAUUCAUGAACCAUGUCAGGUCCGGAAGGAAGCAGCAUUAAGUGAAACCUCUCAUGUGCCGCAGGGUUGCCUGGGCCGAGCUAACUGCUUAAGUAACGCUAGGGUAGCGAAUCGACAGAAGGUGCACGGU |
| [ reference std structure ] |
(((((((...((((((.......[[..))))...{{{{{...]]......}}}}}))......((((((...((((((.((((((((.(..((((.(((((((.(((((.(((..(((((((.((((((((..((((.(((((.....((((....(((....)))....))))...)))).)..))))...)).))))))....)))))))))))))).)))))))))))..))))))))))))))))...)))))).))))))) ( ) |
|
| [ reference ext structure ] |
(((((((((((((((((..([[)[[[)))))(.){{{{{.].]].]]...}}}}})))))(..(((((((((((((((.((((((((.(..((((.(((((((.(((((({)(..(((((((.((((((((..(((((((((((....(((((.(((((....)))).))))))..))))).).)))))...)).))))))....)))))))).})))).)))))))))))..))))))))))))))))))))))))))))))))) ( ) ( ) ( ) ( ) ( ) ( ) ( ) |
|
| [ predicted structure ] | .......................................................................................................................................................................................................................................................................... | |
| 4UE5_A | [ FASTA input ] | GCCGGGCGCGGUGGCGCGCGCCUGUAGUCCCAGCUACUCGGGAGGCUGAGGCAGGAGGAUCGCUUGAGCCCAGGAGUUCUGGGCUGCAGUGCGCUAUGCCGAUCGGGUGUCCGCACUAAGUUCGGCAUCAAUAUGGUGACCUCCCGGGAGCGGGGGACCACCAGGUUGCCUAAGGAGGGGUGAACCGGCCCAGGUCGGAAACGGAGCAGGUCAAAACUCCCGUGCUGAUCAGUAGUGGGAUCGCGCCUGUGAAUAGCCACUGCACUCCAGCCUGUGCAACAUAGCGAGACCCCGUCUCU |
| [ reference std structure ] | ((((((((((..[...)))))))....{{{{.....]..}}}}))).(((((.((....(((((...((.((((.....((((..((((((.(((((......(((((((((.(((((.(.(((((.(((.(..((.(..((((((....))))))..).))..).))......(.(((((.....((((....(((....)))....))))...))))))).))))).)..)))))))...)))))))...)))))))))))..)))).)))).)).....)))))...)).))))). | |
| [ reference ext structure ] |
(((((((((((.[{).)))))))....<<<<.....]}.>>>>))).((((((((.(.)(((((..((..((((...(<)(((.(((((((.(((((......(((((((((.((((((((((((((((((((.((.(((((((((..<a)))))))))).)).))))......b.bbbbbb....bbbbbbbbbb....>ABBBBBBBBBB..BBBBBBB)))))))))).)))))))...)))))))...)))))))))))).))).>)))).).)....)))))...)))))))). ( ) ( ) ( ) ( ) ( ) ( ) ( ) ( ) ( ) ( ) ( ) ( ) |
|
| [ predicted structure ] | ........................................................................................................................................................................................................................................................................................................... | |
| 4W24_8 | [ FASTA input ] | CGACUCUUAGCGGUGGAUCACUCGGCUCGUGCGUCGAUGAAGAACGCAGCUAGCUGCGAGAAUUAAUGUGAAUUGCAGGACACAUUGAUCAUCGACACUUCGAACGCACUUGCGGCCCCGGGUUCCUCCCGGGGCUACGCCUGUCUGAGCGUCGCU |
| [ reference std structure ] | ............................................(((.[[....[)))...]...{{{......]].............}}}.............((....))(.....((.......)).....).................... | |
| [ reference ext structure ] |
....................................(..(.(.(.((.[[....[))).{.]...{{{{{{{..]]..}.......}}}}}}...}....))..)((....))(((...((((.)..)))...))).................... () ( ) ( ) ( ) |
|
| [ predicted structure ] | ............................................................................................................................................................ | |
| 4WFL_A | [ FASTA input ] | GCCGUGCUAAGCGGGGAGGUAGCGGUGCCCUGUACCUGCAAUCCGCUCUAGCAGGGCCGAAUCCCUUCUCGAGGUUCGGUAACGAAUCGACAGAAGGUGCACGGU |
| [ reference std structure ] | (((((((...((((((....[[[[[..))))...{{{{{...]]]]]...}}}}}))......((((((...((((((....))))))...)))))).))))))) | |
| [ reference ext structure ] |
(((((((((((((((((...[[[[[.)))))(.){{{{{]...]]]]...}}}}})))))(..((((((((((((((((..)))))))))))))))))))))))) ( ) ( ) ( ) |
|
| [ predicted structure ] | ......................................................................................................... | |
| 4XW7_A | [ FASTA input ] | GGGUCGUGACUGGCGAACAGGUGGGAAACCACCGGGGAGCGACCCUUGCCGCCCGCCUGGGCAA |
| [ reference std structure ] | (((((((..((........(((((....))))).))..)))))))(((((.........))))) | |
| [ reference ext structure ] | ((((((((((((......[[[[[[...)]]]]]])))))))))))(((((.........))))) | |
| [ predicted structure ] | ................................................................ | |
| 4ZNP_A | [ FASTA input ] | GGGAUACAGGACUGGCGGAUUAGUGGGAAACCACGUGGACUGUAUCCGAAAAAAAGCCGACCGCCUGGGCAUC |
| [ reference std structure ] | .((((((((..(.[[[[[....((((....))))..)..))))))))........{{{..]]]]]..}}}... | |
| [ reference ext structure ] |
(((((((((((((([{{{....{{{{...)}}}}.))))))))))))).......<<<.]}}}....>>>... ( ) ( ) |
|
| [ predicted structure ] | ......................................................................... | |
| 5DI4_A | [ FASTA input ] | GGGUACUUAAGCCCACUGAUGAGUCGCUGGGAUGCGACGAAACGCCCA |
| [ reference std structure ] | ...............(....).(((((......))))).......... | |
| [ reference ext structure ] | .........(.....(....)[[[[[[[)..].]]]]]]......... | |
| [ predicted structure ] | ((((..................(((((......))))).....)))). |
- N/A - RNA 2D structure in Vienna format could not have been generated (most likely due to difficult to represent pseudoknot structure). Check secondary structure file for details.
- std - standard base pair definition
- ext - extended base pair definition