RNA Secondary Structure Atlas - PDB - Murlet(seed)

2KDQ_B	[ FASTA input ]	GGCAGAUCUGAGCCUGGGAGCUCUCUGCC
	[ reference std structure ]	((((((...((((......))))))))))
	[ reference ext structure ]	(((((([..(]((......)).)))))))           (          )
	[ predicted structure ]	..........(((......))).......
2KE6_A	[ FASTA input ]	GGCUUGAUUGUAUUUUUAAAUUAAUUCUUAAAAACUACAAAUUAAGCC
	[ reference std structure ]	(((((.(((((((((((((........))))))).))).))).)))))
	[ reference ext structure ]	(((((.(((((((((((((.(....).))))))).))).))).)))))
	[ predicted structure ]	.......((((((((((((........))))))).)))))........
2KUR_A	[ FASTA input ]	GGCUUGAUUGUAUUAUUAAAUUAAUUCUUAAUAACUACAAAUUAAGCC
	[ reference std structure ]	(((((((((((((((((((........))))))).))).)))))))))
	[ reference ext structure ]	(((((((((((((((((((((....))))))))).))).)))))))))
	[ predicted structure ]	.......((((((((((((........))))))).)))))........
2KUU_A	[ FASTA input ]	GGCUUGAUUGUAUGUGUAAAUUAAUUCUUACACACUACAAAUUAAGCC
	[ reference std structure ]	(((((.(((((((((((((........))))))).))).))).)))))
	[ reference ext structure ]	(((((.(((((((((((((((....))))))))).))).))).)))))                     (     )
	[ predicted structure ]	.......((((((((((((........))))))).)))))........
2KUV_A	[ FASTA input ]	GGCUCGAUUGUAUUUUUAAAUUAAUUCUUAAAAACUACAAAUCGAGCC
	[ reference std structure ]	(((((((((((((((((((........))))))).))).)))))))))
	[ reference ext structure ]	(((((((((((((((((((((....))))))))).))).)))))))))                     (     )
	[ predicted structure ]	...((((((((((((((((........))))))).))).))))))...
2KUW_A	[ FASTA input ]	GGGGUUGGUGUAUUUUUAAAUUAAUUCUUAAAAACUACAAUCAGCUCC
	[ reference std structure ]	(((((((((((.(((((((........)))))))..)).)))))))))
	[ reference ext structure ]	(((((((((((((((((((.(....).))))))).))).)))))))))                     (     )
	[ predicted structure ]	((((((..(((((((((((........))))))).))))...))))))
2L1F_A	[ FASTA input ]	GGCGGACCCGUGGUGGAACAGACGUGUUCGGAACACCCGGCCGCAACCCUGGGAGACGUCCCAGG
	[ reference std structure ]	.((((..(((.(((((((((....)))))....)))))))))))...(((((((....)))))))
	[ reference ext structure ]	.((((.()((.(((((((((....)))))....)))))).))))...(((((((....)))))))        (                               )
	[ predicted structure ]	.((((.((.(.(((((((((....)))))....)))))))))))......((((....))))...
2L1F_B	[ FASTA input ]	GGCGGACCCGUGGUGGAACAGACGUGUUCGGAACACCCGGCCGCAACCCUGGGAGACGUCCCAGGG
	[ reference std structure ]	.((((..(((.(((((((((....)))))....)))))))))))..((((((((....))))))))
	[ reference ext structure ]	.((((.()((.(((((((((....)))))....)))))).))))..((((((((....))))))))        (                               )
	[ predicted structure ]	.((((.((.(.(((((((((....)))))....)))))))))))......((((....))))....
2L94_A	[ FASTA input ]	GGGAAGAUCUGGCCUUCCCACAAGGGAAGGCCAGGGAAUCUUCCC
	[ reference std structure ]	((((((((.((((((((((....))))))))))....))))))))
	[ reference ext structure ]	((((((((((((((((((((..))))))))))))...))))))))
	[ predicted structure ]	.......(((.((((((........)))))).)))..........
2LC8_A	[ FASTA input ]	GGUCAGGGUCAGGAGCCCCCCCCUGAACCCAGGAUAACCCUCAAAGUCGGGGGGCA
	[ reference std structure ]	.(((.((((((((.[[[[[[[)))).))))..))).............]]]]]]].
	[ reference ext structure ]	.((((((((((((({{{{{.[)))).))))).))).............])}}}}}.                    (                             )
	[ predicted structure ]	..((((((...((....)).))))))...........((((........))))...
2MIY_A	[ FASTA input ]	GCUUGGUGCUUAGCUUCUUUCACCAAGCAUAUUACACGCGGAUAACCGCCAAAGGAGAA
	[ reference std structure ]	((((((((.....[[[[[[.)))))))).........(((......)))..]]]]]]..
	[ reference ext structure ]	((((((((.[{..<<<<...)))))))).........(((......)))..]}>>>>..                  (                                  )                         (                                )
	[ predicted structure ]	..((((((............))))))...........((((....))))..........
2N1Q_A	[ FASTA input ]	GGUGCCCGUCUGUUGUGUGACUCUGGUGAGAGCCAGAGGAGAUCUCUCGACGCAGGACUCGGCUUGCUGGAGACGGCAAGAGGCGAGGGGCGGCGACUGGUGAGUACGCCAAAAAUUUUGACUAGCGGAGGCUAGAAGGAGAGAGAUGGGUGCCC
	[ reference std structure ]	(((((((((((...((((..(((((((....)))))))...(((..(((.(((....((((.(((((((....)))))))...))))..))).)))..)))....)))).......(((..(((((....)))))..)))...))))))))))).
	[ reference ext structure ]	((((((((((((((((((.(((((((((..)))))))))..((((((((((((((..(((((((((((((..)))))))))..))))))))))))))))))....)))).).....((((((((((....)))))))))).))))))))))))).
	[ predicted structure ]	...........................................................................................................................................................
2XKV_B	[ FASTA input ]	CUCUGUUGGUUCUCUGUGCUCUGUGCUCUGUUUACCAGGUCAGGUCCGAAAGGAAGCAGCCAAGGCAGAGACGCAGAGCAGGCAGAUGUAGCUGGC
	[ reference std structure ]	.........(....(....((.......(((......((.....((......)).....))...)))........).)......)....)......
	[ reference ext structure ]	.........(...(((...(((.....((((......((....(((.(.)..)).)...))...))).).....)).).....)))...)......                                            (          )                                                                     (                                       )                                                                          (       )
	[ predicted structure ]	....................................(((.....(((....))).....)))..................................
2XXA_G	[ FASTA input ]	GCAUUGCUGGUGCAGCGCAGCGCGGACGCCCGAACCUGGUCAGAGCCGGAAGGCAGCAGCCAUAAGGGAUGCUUUGCGGGUGCCGUUGCCUUCCGGCAAUGC
	[ reference std structure ]	(.((((((((.((((((((.(((((((((((.....((((....(((....)))....))))...))).)).))))))..)).))))))...)))))))).)
	[ reference ext structure ]	((((((((((.((((((((((((((((((((((...((((...(((((..)))))...))))).))).))).))))))).)).))))))...))))))))))                             (                                      )
	[ predicted structure ]	....................................(((.....(((....))).....)))........................................
3A3A_A	[ FASTA input ]	GCCCGGAUGAUCCUCAGUGGUCUGGGGUGCAGGCUUCAAACCUGUAGCUGUCUAGCGACAGAGUGGUUCAAUUCCACCUUUCGGGC
	[ reference std structure ]	(((((((.(..((((([..(.])))))((((((.......)))))).(((((....))))).((((..)....))))).)))))))
	[ reference ext structure ]	(((((((((..(((((({[{.))))))(((((((..)...))))))((((((....))))))(((((]}.)}.)))))))))))))                    ()
	[ predicted structure ]	.(((........................(((((.......))))).................((((.......)))).....))).
3GX2_A	[ FASTA input ]	GGCUUAUCAAGAGAGGUGGAGGGACUGGCCCGACGAAACCCGGCAACCAGAAAUGGUGCCAAUUCCUGCAGCGGAAACGUUGAAAGAUGAGCCG
	[ reference std structure ]	((((((((......(((...(((...[[)))......))).(((..(((....))).)))...(]]..(((((....)))))..))))))))).
	[ reference ext structure ]	((((((((..({(.((((.((((.<<<<.))...).)))))(})..((((..))))...).).(>>>>((((((..))))))..))))))))).                                            (             )                                                           (     )                                                                                                            (               )                                                                 (                              )                                                (                         )
	[ predicted structure ]	..((((((............(((.....)))..........(((.(((......)))))).........................))))))...
3IVN_B	[ FASTA input ]	GGCCAGUAUAACCUCAAUGAUAUGGUUUGAGGGUGUCUACCAGGAACCGUAAAAUCCUGACUACUGGUC
	[ reference std structure ]	(((((((({..((((((......[[.))))))(.....})(((((.]]......)))))..))))))))
	[ reference ext structure ]	(((((((([(.(((((((.{{..{{)))))))).(...].(((((.}}().}}.))))).)))))))))                                     (                        )                                        (      )                                                                (  )
	[ predicted structure ]	..((((((.....((((.........))))..(((........(((.......)))..)))))))))..
3J3E_8	[ FASTA input ]	AACUCUAAGCGGUGGAUCACUCGGCUCAUGGGUCGAUGAAGAACGCAGCAAACUGUGCGUCAUCGUGUGAACUGCAGGACACAUGAACAUCGACAUUUUGAACGCAUAUCGCAGUCCAUGCUG
	[ reference std structure ]	........................................((((((.[[.....))).....(.((((.....]]...........))))..)...)))....((.....))...........
	[ reference ext structure ]	..................................().<((((((((.{{(.).{))).[.}(].(((..(((.}}).)......).).))....).))))>).((.....))...........                                                                   (                    )                                                                                                           (     )                                                                                 (                                                                  )                                                                                   (                             )                                                                                                          ()                                                                                                       ()                                                                                                                                     (                  )                                                                                               (                                  )                                                                   (                                                                )
	[ predicted structure ]	.......................................................................................................((.....))((.))......
3J3F_8	[ FASTA input ]	CGACUCUUAGCGGUGGAUCACUCGGCUCGUGCGUCGAUGAAGAACGCAGCUAGCUGCGAGAAUUAAUGUGAAUUGCAGGACACAUUGAUCAUCGACACUUCGAACGCACUUGCGGCCCCGGGUUCCUCCCGGGGCUACGCCUGUCUGAGCGUCGCUU
	[ reference std structure ]	..........................................((.((.[[.....))......(.(((......]].............)))..)...)).....((....))(((((.((.......)).))))).....................
	[ reference ext structure ]	....................................(.{(((((.((.[[....[))).(.].(((((.(((..]].)........)).)))).))...)))}))((....))(((((((((.....))))))))).....................                                                          ()                                                                                                                                              (                                                      )                                                                                                                                  (      )                                                                                                                           (            )
	[ predicted structure ]	.........................................................................................................((....))(((((.............))))).....................
3JB9_N	[ FASTA input ]	GAUCUUCGGAUCACUUUGGUCAAAUUGAAACGAUACAGAGAAGAUUAGCAUGGCCCCUGCACAAGGAUGACACUGCGACAUUGAGAGAAA
	[ reference std structure ]	.(........)........................................(..((((.....)))..).)...................
	[ reference ext structure ]	((((....))))...........................((.....))(.[[[.[(((.....))).)]]]]..................
	[ predicted structure ]	...............................................(((.......)))..............................
3JB9_C	[ FASTA input ]	CGUCAAAGCACUUUGCAAAAGCUAACGUAUCUGUUUCUUGCCUUUUACCAGAAACAGCCGUUUGUAAGGUGUGCUAAUUUGACUGUAUAGUUUUUGUAAUCUUUU
	[ reference std structure ]	(((((((((((((((((((......((...((((((((...........)))))))).)))))))))))))).....)))))).)....................
	[ reference ext structure ]	(((((((((((((((((((......((...((((((((((.......)))))))))).)))))))))))))).....)))))).)....................                                                                                     ()
	[ predicted structure ]	..............................((((((((.(.......).))))))))................................................
3JYX_4	[ FASTA input ]	AAACUUUCAACAACGGAUCUCUUGGUUCUCGCAUCGAUGAAGAACGCAGCGAAAUGCGAUACGUAAUGUAGGUUGCAGAAUUCCGUGAAUCAUCGAUCUUUGAACGCACAUUGCGCCCCUUGGUAUUCCAGGGGGCAUGCCUGUUUGAGCGUCAUUU
	[ reference std structure ]	..........................................(.(((........))).......(..........................)......)................(((((((....))))))).......................
	[ reference ext structure ]	.(..)..............................().<((((({(([.....[.).}..)..(.(((.((..]].......))......))).)...))))>)...(....)...((((((((..)))))))).......................                                                                                                             (   )                                                                                          (          )                                                                                                                                           (                                                                 )                                                                                                                         (                     )                                                                                                                                                                              (     )
	[ predicted structure ]	.........................................................................................................((.....))(((((............))))).....................
3LA5_A	[ FASTA input ]	GGCUUCAUAUAAUCCGAAUGAUAUGGUUUCGGAGCUUCCACCAAGAGCCUUAAACUCUUGACUAUGGAGUC
	[ reference std structure ]	((((((((([..((((((......{{.))))))(.....])((((((}}.....))))))..)))))))))
	[ reference ext structure ]	(((((((((((.(((((((.[[[.[[)))))))).....).((((((]]..]]]))))))..)))))))))                                                 (   )                                            (                           )                                                       (                        )                                          (      )                                                                   (                          )
	[ predicted structure ]	..(((((((.....((((.........))))..(((........(((.......)))..))))))))))..
3NPB_A	[ FASTA input ]	GUUCUUAUCAAGAGAAGCAGAGGGACUGGCCCGACGAAGCUUCAGCAACCGGUGUAAUGGCGAAAGCCAUGACCAAGGUGCUAAAUCCAGCAAGCUCGAACAGCUUGGAAGAUAAGAAC
	[ reference std structure ]	(((((((((....(((((...(((.[[[[)))......))))).((..(((((...((((......)))).)))..)).))....(]]]]((.((.......)).))..))))))))))
	[ reference ext structure ]	(((((((((..(((((((.()(((.[[[[)))......))))).)).()(((((..((((((..))))))))))..)........(]]]]((.((.......)).))..))))))))))                                             (                                   )                                                                     (                                                   )                                                                                     (                            )                                                                                       (                                 )                                                               (                                                           )
	[ predicted structure ]	...((((((............(((.....)))...........(((.(((..........................))))))............................))))))...
3O58_3	[ FASTA input ]	AAACUUUCAACAACGGAUCUCUUGGUUCUCGCAUCGAUGAAGAACGCAGCGAAAUGCGAUACGUAAUGUGAAUUGCAGAAUUCCGUGAAUCAUCGAAUCUUUGAACGCACAUUGCGCCCCUUGGUAUUCCAGGGGGCAUGCCUGUUUGAGCGUCAUUU
	[ reference std structure ]	.........................................((((([..(.....]))....((..((.........)............))...).).)))....(((...))).((((((((....))))))))......................
	[ reference ext structure ]	....................................(.{((((([((.<<....<).]..)>((.(.(.........>.>..........))...))..))))}))(((...)))(((((((((....))))))))).....................                                                          ()                                                                                                                                          (                                                                  )                                                                                                  (          )                                                                                                                                                                        (                        )                                                                                                                                 (                                  )                                                                                                             (                             )
	[ predicted structure ]	..........................................................................................................((.....))(((((............))))).....................
3PDR_A	[ FASTA input ]	GGGCUUCGUUAGGUGAGGCUCCUGUAUGGAGAUACGCUGCUGCCCAAAAAUGUCCAAAGACGCCAAUGGGUCAACAGAAAUCAUCGACAUAAGGUGAUUUUUAAUGCAGCUGGAUGCUUGUCCUAUGCCAUACAGUGCUAAAGCUCUACGAUUGAAGCCCA
	[ reference std structure ]	((((((((((.[[[..[[[..[[[[[[[[......[[[[[[(((((....((((....))))....))))).....[[[[[[[[[......)]]]]]]]]]..].]]]]].((........))....]]]]]]]].]]]...]]]..))....))))))).
	[ reference ext structure ]	(((((((([(.<<<<<<<<<.<<<<<<<<<a(.A.<<<<<<[[[[[[...[[[[..)(]]]]...]]]]]].{...{{{{{{{{b.{...))B}}}}}}}}}.>.>>>>>(((........)))).>>>>>>>>>>>>>>.>>>>..].().}))))))).                                                                      (                                )                                                                              ()                                                                                                                                                                              (                                                                                           )                                           (                                                                                                                                            )                                                                                                     (                                                               )                                                                                                     (                                               )                                                                                                          (     )                                                                                                     (                                                                                            )                                                                                                              (                                                              )                                                          (                                                                            )
	[ predicted structure ]	................(((....((((..........................(....).................((((..((.........))..))))............................))))...)))......................
3RKF_A	[ FASTA input ]	GGCCAUAUAACUGCGUGGAUAUAGCACGCAGGUUUCUACCGGGCACUGUAAAUGUCCGACUAUGGUC
	[ reference std structure ]	((((((([..(((((((.....{{)))))))(.....])((((((}}.....))))))..)))))))
	[ reference ext structure ]	(((((((((.(((((((.[[[.[[)))))))).....).((((((]]()]]]))))))..)))))))                                    (                        )                                                     (    )                                               (      )                                                               (                          )                                                    (   )                                        (                           )
	[ predicted structure ]	..(((((.....((((.........))))..(((........(((.......)))..))))))))..
3SD1_A	[ FASTA input ]	GGAGAGUAGAUGAUUCGCGUUAAGUGUGUGUGAAUGGGAUGUCGUCACACAACGAAGCGAGAGCGCGGUGAAUCAUUGCAUCCGCUCCA
	[ reference std structure ]	((((....((((((((((((......(((((((...[[[[....))))))).....((....))))).)))))))))..]]]].)))).
	[ reference ext structure ]	((((((.({{{{{{{{{{{{..{{.{{{{{{{{.[.)((((].)}}}}}}}}.}}.(((..)))}}}.}}}}}}}}}.)))).))))).                                                        (        )                                               (                                           )                                                        (         )                                                                (  )                                                                                                        (                                             )
	[ predicted structure ]	........((((..............(((((((...........))))))).((...........))......))))............
3W1K_J	[ FASTA input ]	GGGAGUAGAUAGGCGCUGGUGUGCCUCCUAGACUUCAAAUCUACGGUCUCGCUAUUUAAGCGAGAGGUGGGUUCGAUUCCCACAUACUCCCG
	[ reference std structure ]	(((((((....(((((..[.))))).((((((.......)))).))(((((((.....))))))).{{{{{..]....}}}}}.))))))).
	[ reference ext structure ]	((((((((...((((([[{.))))).(((((((.....))))).))((((((((...)))))))).<<<<<<]}.>].>>>>>)))))))).                     (                                            )
	[ predicted structure ]	...........................(((((.......))))).......................((((.......))))..........
3W3S_B	[ FASTA input ]	GGGAGAGGUUGGCCGGCUGGUGCCGCCCCGGGACUUCAAAUCCCGUGGGAGGUCCCGCAAGGGAGCUCCGGAGGGUUCGAUUCCCUCCCUCUCCCGCC
	[ reference std structure ]	(((.((((..((.((([..(.])))))((((((.......))))).)((((.((((....)))).)))).(((((..)....))))))))).)))...
	[ reference ext structure ]	(((.((((..((.(((([[()))))))((((((.......))))).)((((((((((..)))))))))).((((((]..)].))))))))).)))...                    (                                                         )                                          (                                               )
	[ predicted structure ]	.(((........................(((((.......)))))..........................((((.......))))........))).
3ZEX_C	[ FASTA input ]	AACGUGUCGCGAUGGAUGACUUGGCUUCCUAUUUCGUUGAAGAACGCAGCAAAGUGCGAUAAGUGGUAUCAAUUGCAGAAUCAUUUCAUUGCCCAAUCUUUGAACGCAAACGGCGCAUGGGAGAAGCUCUCUCGAGCCAUCCCCGUGCAUGCCACAUUUCUCAGUGUCG
	[ reference std structure ]	.........................................((((((.[[.....)))....(((((((...(.]].).........).)))).).).)))....((.....))(((((.(.(..((((....))))..).).))))).....................
	[ reference ext structure ]	...................................[(..(.(((.((.{.(.){.)))(..}((((((..((..}..).......).)..))).))..))))].)(((..).))(((((((((.(((((....))))).))))))))).....................                                                                                                                      (                           )                                                                                 ()                                                                                                                                                                (                        )                                                                                                                                     (                                                               )                                                                                                                                       (                  )                                                                                                                                                     (                     )                                                                                                                       (                                                               )                                                                                                             (                                                      )                                                                                                                       (                          )                                                                                                                                                                      (    )                                                                                                                                    (                                                            )                                                                                                                 (              )                                                                                                                                                                           (                                 )                                                                                                                     (            )                                                                                                                                                      (                                                                 )
	[ predicted structure ]	.........................................................................................................((.....))(((((........................))))).....................
4A1C_2	[ FASTA input ]	AGAAAAUUUUCAACGGUGGAUAUCUAGGUUCCCGUGACGAUGAAGAACGCAGCGAAAUGCGAUACGCAAUGCGAAUUGCAGAACCGCGAGUCAUCAGAUCUUUGAACGCAAGUGGUGGAGGUGUAAAAACCUUCAUGUUUGUUUCAGUGUGGAA
	[ reference std structure ]	............................................((((((.[[.....))).....(.((((.....]]..........).)))..)...)))....((.....))(((((........)))))....................
	[ reference ext structure ]	.......................................(.<((((({((.[[....[).}..)](((((((.((..]]...)....).).)))).))..))))>))((.....))(((((........)))))....................                                                             ()                                                                                                                                      (                                                                )                                                                                                                         (         )                                                                                                                       (          )
	[ predicted structure ]	...........................................................................................................((.....))(((((........)))))....................
4AOB_A	[ FASTA input ]	GGCUUAUCAAGAGAGGGCAAGAGACUGGCUUGAUGACCCCCGGCAACCAAAAAUGGUGCCAAUUCCUGCAGAGGAAACGUUGAAAGAUGAGCCA
	[ reference std structure ]	((((((((....(.(((...(((.[.[[)))......))))(((..(((....))).)))...(]].](((.(....).)))..))))))))).
	[ reference ext structure ]	((((((((..({(.((((.((((.<<<..))...).)))))(})..((((..))))...)...()>>>((((((..))))))..))))))))).                       (                                      )                                                                            (             )                                                                  (                              )                                                     (           )                                                                                   (              )                                                                                      (                                    )                                                                        (               )                                                          (     )
	[ predicted structure ]	..((((((............(((.....)))..........(((.(((......)))))).........................))))))...
4BY9_A	[ FASTA input ]	GCGAGCAAUGAUGAGUGAUGGGCGAACUGAGCUCGAAAGAGCAAUGAUGAGUGAUGGGCGAACUGAGCUCGC
	[ reference std structure ]	((((((....................(...((((....))))......).................))))))
	[ reference ext structure ]	((((((...((((.............(((((((((..)))))...)))).............))))))))))                           (                      )
	[ predicted structure ]	........................................................................
4C4Q_N	[ FASTA input ]	GACUAGCCGUAGUGGCGAGCUCCCUGGGUGGUCUAAGUCCUGAGUACAGGACAGUCGUCAGUAGUUCGACGUGAGCACUAGCCCACCUCGAGAUGCUACGUGGACGAGGGCAUGCCCAAGACACACCUUAACCCUGGCGGGGGUCGCUAGGGUGAAAUCACAUUAUGUGAUGGGGGUACGACCUGAUAGGGUGCUGCAGAGGCCCACUAGCAGGCUAGUAUAAAAAUCUCUGC
	[ reference std structure ]	.(((((((.((((((((.((((((.(((((((((..((((((....))))))..(((((..((((((((.(((.((....)).))).))))...))))....)))))(((....))).)))).)))))..((((((((((...))))))))))....(((((...))))).)))))).)).(((....))).((..[[[[.))))))))...))))))).........]]]].
	[ reference ext structure ]	.(((((((.((((((((.((((((.(((((((((..((((((....))))))..(((((.(((((((((.(((((((..))))))).))))...)))))...)))))(((....))).))))).))))..((((((((((...))))))))))....(((((...))))).)))))).))(((((..)))))((..[[[[[))))))))...)))))))........]]]]].                              (                                                                                             )                                                                                                                                        (                                                                                                      )                                                                                                            (                                                                                                                                                                                                                            )                                                                                                                      (   )
	[ predicted structure ]	((((((((((((.((((.((((((.(((((((((..((((((....))))))..(((((.(((((((((..................))))...)))))...)))))(((....))).)))).)))))..((((((((((...))))))))))..................)))))).)).)).....((((.((....)))))).))))..))))))).............)
4ENB_A	[ FASTA input ]	GGCGAUGAGGCCCGCCCAAACUGCCCUGAAAAGGGCUGAUGGCCUCUACUG
	[ reference std structure ]	((((..[[[[[[))))......(((((....)))))....]]]]]].....
	[ reference ext structure ]	{((((.<<<<<<)).}...)..((((((..))))))).(.>>>>>>)....  (            )
	[ predicted structure ]	......((((((............................)))))).....
4ENC_A	[ FASTA input ]	GGGCGAUGAGGCCCGCCCAAACUGCCCUGAAAAGGGCUGAUGGCCUCUACUG
	[ reference std structure ]	.((((..[[[[[[))))......(((((....)))))....]]]]]].....
	[ reference ext structure ]	.{((((.<<<<<<)).}...)..((((((..))))))).(.>>>>>>)....   (            )
	[ predicted structure ]	.......((((((............................)))))).....
4FRG_B	[ FASTA input ]	GGCCUAAAAGCAUAGUGGGAAAGUGACGUGAAAUUCGUCCAGAUGCGAAAGCAUACGGUUAUACUCCGAAUGCCACCUAGGCCA
	[ reference std structure ]	((((((........((((....(.((((.......)))))((((((....)))).[[[.....))]]]....)))).)))))).
	[ reference ext structure ]	((((((...{(.}.((((...<(.(((([(..]..)))))(>(((((..)))))(((((.).).)))))..))))).)))))).                                          (                     )
	[ predicted structure ]	((((((........(((........(((.......))).............)))..))))))......................
4FRN_A	[ FASTA input ]	GGGCUAAAAGCAUGGUGGGAAAGUGACGUGUAAUUCGUCCACAUUACUUGAUACGGUUAUACUCCGAAUGCCACCUAGCCCAAAGUAGAGCAAGGAGACUCA
	[ reference std structure ]	.(((((.......(((((....(.((((.......)))))(.(([.[[[.)).{{{......)}}}....)))))))))).......(((.]]]...]))).
	[ reference ext structure ]	.(((((...{(.}(((((....(.(((([(..]..)))))(.(.<.<<<<).aaaa(.).).)AAAA..))))))))))).......(((>>>>...>))).                                           (        )                                                                                              (      )
	[ predicted structure ]	((((((........((((.......(((.......)))....(((....)))..................)))).)))))).....................
4JF2_A	[ FASTA input ]	GAACCGCGAAAGCGGUUCCACGACGAUACUUAUUUCCUUUGAUCGUCGUUAUUACUGGCUUCGGCCACAAAGGAGA
	[ reference std structure ]	(((((((....))))))).((((((((.......[[[[[..))))))))......((((....))))..]]]]]..
	[ reference ext structure ]	((((((((..)))))))).(((((((((.((...<<<...)))))))))....(.(((((..)))))).))>>>..                                                       (            )                                               (                              )                                            (                                )
	[ predicted structure ]	....................(.((((((............))))))...........(((()))).......)...
4P5J_A	[ FASTA input ]	AGCUCGCCAGUUAGCGAGGUCUGUCUCGACACGACAGAUAAUCGGGUGCAACUCCCGCCCCUCUUCCGAGGGUCAUCGGAACC
	[ reference std structure ]	.((((((..[...)))))(((((((.......)))))))...{{{{..]....}}}}(((...{{{{{{))).).}}}}}}..
	[ reference ext structure ]	.(((((([[()..)))))(((((((.......)))))))...{{{{{]..}].}}}}(((..{{{{{{{))).).}}}}}}.}                                                                        ()                                                                                 (   )                  (                                      )
	[ predicted structure ]	...................((((((.......)))))).........................((((..........))))..
4P8Z_A	[ FASTA input ]	GGUUGGGUUGGGAAGUAUCAUGGCUAAUCACCAUGAUGCAAUCGGGUUGAACACUUAAUUGGGUUAAAACGGUGGGGGACGAUCCCGUAACAUCCGUCCUAACGGCGACAGACUGCACGGCCCUGCCUCUUAGGUGUGUCCAAUGAACAGUCGUUCCGAAAGGAAGCAUCCGGUAUCCCAAGACAAUC
	[ reference std structure ]	(((((..(((((..(((((((((...[[[.)))))))))..{{{{.{{{.{{{{......{{{{{...{{{{..{{{...]]]}}}.......}}}}((....)).....<<<<<...}}}}}.(((.....)))}}}}.}}}....>>>>>.((((....))))....}}}}...)))))..)))))
	[ reference ext structure ]	((((((((((((..(((((((((...[.[.))))))))).{<<<<<<<<<<<<<(..<)<<<<<<.<.<<<<a.aaa...]].AAA...>.A..>>>aa...>AA....aaaaaa.()>>>>>>a.(.....)>A>>>>>>>>>.}.AAAAA.(((((..)))))..A.>>>>...))))))))))))                            (                                                     )                                                                                                                                                                                                              (  )                                                                                                                                                                                                                                      (                        )                                                                                                                                                                    (                           )                                         (                                                       )                                                                                                                                                                                 (                     )                                                                                                                                                                                                                                                 (                       )                                                                                                                                               (       )
	[ predicted structure ]	...................(((..((((((((..........(((((......(((....)))........................................(((....))).....)))))(((......)))))))))))(((((.((.............)).)))))....))).........
4QK8_A	[ FASTA input ]	GUUGCCGAAUCCGAAAGGUACGGAGGAACCGCUUUUUGGGGUUAAUCUGCAGUGAAGCUGCAGUAGGGAUACCUUCUGUCCCGCACCCGACAGCUAACUCCGGAGGCAAUAAAGGAAGGA
	[ reference std structure ]	..((((....((....))..(((((....(.....(.[((((....((((((.....))))))..(((((.{{{{{{)))))..)))).)].)....)))))..)))).....}}}}}}.
	[ reference ext structure ]	..((((((.((((..))))[.(((((..((.....(.[((((.(.(((((((.....)))))))[)((((.{{{{{{)))).].)))).)].))..))))))]))))).....}}}}}}.                                                                              (                                 )                                                                                                (   )                                                                                              (               )                                                           (                                                                                )                                                                                                           ( )                                                                    (                                                    )
	[ predicted structure ]	...................((((((.............((((..........................................))))(....)...)))))).................
4TZY_X	[ FASTA input ]	GGGAAGAUAUAAUCCUAAUGAUAUGGUUUGGGAGUUUCUACCAAGAGCCUUAAACUCUUGAUUAUCUUCCC
	[ reference std structure ]	((((((((((..((((((......[[.))))))[.....)]{{{{{{]].....}}}}}}..)))))))))
	[ reference ext structure ]	(((((((((((.(((((((.[[..[[)))))))).....).{{{{{{]]...]]}}}}}}..)))))))))                                                 (   )                                            (                           )                                                       (                        )                                          (      )                                                                   (                          )
	[ predicted structure ]	.....((((.....((((.........))))..(((........(((.......)))..))))))).....
4UE5_A	[ FASTA input ]	GCCGGGCGCGGUGGCGCGCGCCUGUAGUCCCAGCUACUCGGGAGGCUGAGGCAGGAGGAUCGCUUGAGCCCAGGAGUUCUGGGCUGCAGUGCGCUAUGCCGAUCGGGUGUCCGCACUAAGUUCGGCAUCAAUAUGGUGACCUCCCGGGAGCGGGGGACCACCAGGUUGCCUAAGGAGGGGUGAACCGGCCCAGGUCGGAAACGGAGCAGGUCAAAACUCCCGUGCUGAUCAGUAGUGGGAUCGCGCCUGUGAAUAGCCACUGCACUCCAGCCUGUGCAACAUAGCGAGACCCCGUCUCU
	[ reference std structure ]	((((((((((..[...)))))))....{{{{.....]..}}}}))).(((((.((....(((((...((.((((.....((((..((((((.(((((......(((((((((.(((((.(.(((((.(((.(..((.(..((((((....))))))..).))..).))......(.(((((.....((((....(((....)))....))))...))))))).))))).)..)))))))...)))))))...)))))))))))..)))).)))).)).....)))))...)).))))).
	[ reference ext structure ]	(((((((((((.[{).)))))))....<<<<.....]}.>>>>))).((((((((.(.)(((((..((..((((...(<)(((.(((((((.(((((......(((((((((.((((((((((((((((((((.((.(((((((((..<a)))))))))).)).))))......b.bbbbbb....bbbbbbbbbb....>ABBBBBBBBBB..BBBBBBB)))))))))).)))))))...)))))))...)))))))))))).))).>)))).).)....)))))...)))))))).                                                                                                                                         (                      )                                                                                                                                                                                                                                                                                                                                                (    )                                                                                                                                                                                                                                                                                                                                                                                       ( )                                                                                                                                                           (                        )                                                                                                                                                                                                                                                                               (                              )                                                                                                                                                                                                                                                                                             (                                                  )                                                                                                                                                                                                                                        (                            )                                                                                                                                                                                                             (                                                                                                                                                                                                              )                                      (                       )                                                                                                                                                                                                                                                                                                                                        (                                                                                                                                                                                                                )                                                                                                      (                                                                                                                                                                                            )                                                                                                                                                                                                                                    (  )
	[ predicted structure ]	...........................................................((((.((.((.(((........................(((.....)))((((..(((.......(((.((((.(((....((((((....))))))....))).))))........(((((......(((....(((....)))....)))....)))))..)))........))).)))).............................).)).))..))..))))............
4W24_8	[ FASTA input ]	CGACUCUUAGCGGUGGAUCACUCGGCUCGUGCGUCGAUGAAGAACGCAGCUAGCUGCGAGAAUUAAUGUGAAUUGCAGGACACAUUGAUCAUCGACACUUCGAACGCACUUGCGGCCCCGGGUUCCUCCCGGGGCUACGCCUGUCUGAGCGUCGCU
	[ reference std structure ]	............................................(((.[[....[)))...]...{{{......]].............}}}.............((....))(.....((.......)).....)....................
	[ reference ext structure ]	....................................(..(.(.(.((.[[....[))).{.]...{{{{{{{..]]..}.......}}}}}}...}....))..)((....))(((...((((.)..)))...)))....................                                                          ()                                                                                                                                             (                                                      )                                                                                                       (              )                                                                                                                                            (            )
	[ predicted structure ]	.........................................................................................................((....))(((((.............)))))....................
5DI4_A	[ FASTA input ]	GGGUACUUAAGCCCACUGAUGAGUCGCUGGGAUGCGACGAAACGCCCA
	[ reference std structure ]	...............(....).(((((......)))))..........
	[ reference ext structure ]	.........(.....(....)[[[[[[[)..].]]]]]].........
	[ predicted structure ]	................................................

• N/A - RNA 2D structure in Vienna format could not have been generated (most likely due to difficult to represent pseudoknot structure). Check secondary structure file for details.
• std - standard base pair definition
• ext - extended base pair definition