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RNA Secondary Structure Atlas - PDB - PPfold(seed)
| 1VX6_B | [ FASTA input ] | GACUCGUUCAUACUACAGUGGAUACACCAGAUCCCAUCAGAACUCUGAAGUUAAGCACUGUAAGGCUUGGCUAGUACUGAGGUGGGAGACCGCUCGGGAACACCAGGUGAUGAGUCAG |
| [ reference std structure ] | ((((((((....((((((((.....((.(((...(....)...)))...))....)))))).))((((((......(((((..((....)).))))).....)))))))))))))).. | |
| [ reference ext structure ] |
([[[[[[[....[[[[[[[[[.)](((((((...([...).].))))..))...)]]]]]].]](((((((((()(((((((.(((..)))))))))).)))))))))]]]]]]]... ( ) ( ) ( ) ( ) ( ) ( ) ( ) ( ) ( ) |
|
| [ predicted structure ] | ...................................................................................................................... | |
| 2LC8_A | [ FASTA input ] | GGUCAGGGUCAGGAGCCCCCCCCUGAACCCAGGAUAACCCUCAAAGUCGGGGGGCA |
| [ reference std structure ] | .(((.((((((((.[[[[[[[)))).))))..))).............]]]]]]]. | |
| [ reference ext structure ] |
.((((((((((((({{{{{.[)))).))))).))).............])}}}}}. ( ) |
|
| [ predicted structure ] | ...............((((((((........))...............)))))).. | |
| 2MIY_A | [ FASTA input ] | GCUUGGUGCUUAGCUUCUUUCACCAAGCAUAUUACACGCGGAUAACCGCCAAAGGAGAA |
| [ reference std structure ] | ((((((((.....[[[[[[.)))))))).........(((......)))..]]]]]].. | |
| [ reference ext structure ] |
((((((((.[{..<<<<...)))))))).........(((......)))..]}>>>>.. ( ) ( ) |
|
| [ predicted structure ] | .(((((((............)))))))..........((((....)))).......... | |
| 2MS1_B | [ FASTA input ] | GGCUCGUUGGUCUAGGGGUAUGAUUCUCGCUUAGGGUGCGAGAGGUCCCGGGUUCAAAUCCCGGACGAGCC |
| [ reference std structure ] | (((((....((...........))((((((.......)))))).....((((.......))))...))))) | |
| [ reference ext structure ] |
(((((....((((.[.....))))((((((.......))))))...]((((((...)..)))))..))))) ( ) |
|
| [ predicted structure ] | ....................................................................... | |
| 2N1Q_A | [ FASTA input ] | GGUGCCCGUCUGUUGUGUGACUCUGGUGAGAGCCAGAGGAGAUCUCUCGACGCAGGACUCGGCUUGCUGGAGACGGCAAGAGGCGAGGGGCGGCGACUGGUGAGUACGCCAAAAAUUUUGACUAGCGGAGGCUAGAAGGAGAGAGAUGGGUGCCC |
| [ reference std structure ] | (((((((((((...((((..(((((((....)))))))...(((..(((.(((....((((.(((((((....)))))))...))))..))).)))..)))....)))).......(((..(((((....)))))..)))...))))))))))). | |
| [ reference ext structure ] | ((((((((((((((((((.(((((((((..)))))))))..((((((((((((((..(((((((((((((..)))))))))..))))))))))))))))))....)))).).....((((((((((....)))))))))).))))))))))))). | |
| [ predicted structure ] | .........................................................((((.((((((((..))))))))...)))).................................................................... | |
| 2N7M_X | [ FASTA input ] | GGCCUUAUGCACGGGAAAUACGCAUAUCAGUGAGGAUUCGUCCGAGAUUGUGUUUUUGCUGGUGUAAAUCAGCAGUUCCCCUGCAUAAGGCU |
| [ reference std structure ] | (((((((((((.((((...(.(((...(.................)..))).)...((((((......))))))..)))).))))))))))) | |
| [ reference ext structure ] | (((((((((((.(((((..(((((.(.(.....(((....)))..).))))))...(((((((....))))))).))))).))))))))))) | |
| [ predicted structure ] | ............................................................................................ | |
| 3AMU_B | [ FASTA input ] | GGGCCCGUAGCUUAGCCAGGUCAGAGCGCCCGGCUCAUAACCGGGCGGUCGAGGGUUCGAAUCCCUCCGGGCCCACCA |
| [ reference std structure ] | (((((.(..((((..........)))).((((.........)))).....(((((.......)))))).))))).... | |
| [ reference ext structure ] |
((((((((({{.[)<....(...])}}.((((.........))))....>((((((.).)..)))))))))))).... ( ) ( ) ( ) |
|
| [ predicted structure ] | .............................................................................. | |
| 3J16_L | [ FASTA input ] | UCCGUGAUAGUUUAAUGGUCAGAAUGGGCGCUUGUCGCGUGCCAGAUCGGGGUUCAAUUCCCCGUCGCGGAGCCA |
| [ reference std structure ] | (((((((..((((........)))).(((((.......)))))....(((((.......)))))))))))).... | |
| [ reference ext structure ] |
(((((((((<<.[)({.{...])>>((((((.(..)..))))))..)((((((}..)}.)))))))))))).... ( ) ( ) |
|
| [ predicted structure ] | ........................................................................... | |
| 3J20_0 | [ FASTA input ] | GCCGCCGUAGCUUAGCUGGUGGAGCGCCGGACUGUUAAUCCGGCGGUCCCCGGUUCGAAUCCGGGCGGCGGCGCCA |
| [ reference std structure ] | (((((((..((([.....(..]))).(((((.......))))).....((.((..)....)).))))))))).... | |
| [ reference ext structure ] |
((((((((.{{{{)<..[(..}}}}.((((((.....))))))....>((((((]).)..)))))))))))).... ( ) ( ) ( ) |
|
| [ predicted structure ] | ............................................................................ | |
| 3J20_1 | [ FASTA input ] | GGGGCGGUAGCUCAGCCUGGGAGAGCACCGGACUGAAGAUCCGGGUGUCGGGGGUUCAAAUCCCCCCCGCCCCACCA |
| [ reference std structure ] | ((((((...((((.........)))).(((((.......))))).....(((((.......))))).)))))).... | |
| [ reference ext structure ] | ((((((((.[[[[)........]]]].(((((.......))))).....((((((...)..)))))))))))).... | |
| [ predicted structure ] | ............................................................................. | |
| 3J2L_3 | [ FASTA input ] | CGGCGGCCAUAGCGGGGGGGCCACACCCGGUCUCAUUUCGAACCCGGAAGUUAAGCCCCCCAGCGAUCCCGGUUGUACUGCCCUCCGAGAGGGGGCGGGAAGCCGGGGACGCCGCCGGCCACUAUC |
| [ reference std structure ] | .((((((....(((.((((.....(.((((...(.....)...))))...)....)))).).))..(((((((....((((((.((....))))))))...)))))))..)))))).......... | |
| [ reference ext structure ] |
.((((((.(..(((.(({(}...(((((((.).[.(...])...)))..))...)).)).).)))((((((((..((((((((.(((..))))))))))).)))))))).)))))).(.)...... ( ) ( ) ( ) ( ) ( ) ( ) ( ) ( ) ( ) ( ) |
|
| [ predicted structure ] | .............................................................................................................................. | |
| 3J3D_C | [ FASTA input ] | AGCAGAGUGGCGCAGCGGAAGCGUGCUGGGCCCAUAACCCAGAGGUCGAUGGAUCGAAACCAUCCUCUGCUACCA |
| [ reference std structure ] | (((((((..(([.....(...])).(((((.......))))).......(((..)....)))..))))))).... | |
| [ reference ext structure ] |
((((((((({{..)(<a<..()}}((((((.......)))))).).)(((((A.>..>.)))))))))))).... ( ) |
|
| [ predicted structure ] | ........................................................................... | |
| 3J3E_7 | [ FASTA input ] | GCCAACGACCAUACCACGCUGAAUACAUCGGUUCUCGUCCGAUCACCGAAAUUAAGCAGCGUCGCGGGCGGUUAGUACUUAGAUGGGGGACCGCUUGGGAACACCGCGUGUUGUUGGCCU |
| [ reference std structure ] | (((((((((.....(((((((.....(.((((...(....)...))))...)....)))))).).(.(((((.....((.((..((....)).)).))....))))).)))))))))).. | |
| [ reference ext structure ] |
(([[[[[[(...)[[[[[[[[.)..(<(((((...{(...}..)))))...>.).)]]]]]].]](((((((((()(((((((.(((..)))))))))).))))))))).]]]]]].).. ( ) ( ) ( ) ( ) ( ) ( ) ( ) ( ) |
|
| [ predicted structure ] | ........................................................................................................................ | |
| 3J3E_8 | [ FASTA input ] | AACUCUAAGCGGUGGAUCACUCGGCUCAUGGGUCGAUGAAGAACGCAGCAAACUGUGCGUCAUCGUGUGAACUGCAGGACACAUGAACAUCGACAUUUUGAACGCAUAUCGCAGUCCAUGCUG |
| [ reference std structure ] | ........................................((((((.[[.....))).....(.((((.....]]...........))))..)...)))....((.....))........... | |
| [ reference ext structure ] |
..................................().<((((((((.{{(.).{))).[.}(].(((..(((.}}).)......).).))....).))))>).((.....))........... ( ) ( ) ( ) ( ) () () ( ) ( ) ( ) |
|
| [ predicted structure ] | (((............(((...................................................................................................)))))) | |
| 3J3F_7 | [ FASTA input ] | GUCUACGGCCAUACCACCCUGAACGCGCCCGAUCUCGUCUGAUCUCGGAAGCUAAGCAGGGUCGGGCCUGGUUAGUACUUGGAUGGGAGACCGCCUGGGAAUACCGGGUGCUGUAGGCUUU |
| [ reference std structure ] | (((((((((....((((((((.....(.((((...(....)...))))...)....)))))).))(((((((.....((.((..((....)).)).))....))))))))))))))))... | |
| [ reference ext structure ] |
((((((((((..)((((((((....(((((((...(....)...))))..))...))))))).))(((((((.(()(((.(((.(((..)))))).))).).))))))))))))))))... ( ) ( ) ( ) ( ) ( ) ( ) |
|
| [ predicted structure ] | ......................................................................................................................... | |
| 3J3F_8 | [ FASTA input ] | CGACUCUUAGCGGUGGAUCACUCGGCUCGUGCGUCGAUGAAGAACGCAGCUAGCUGCGAGAAUUAAUGUGAAUUGCAGGACACAUUGAUCAUCGACACUUCGAACGCACUUGCGGCCCCGGGUUCCUCCCGGGGCUACGCCUGUCUGAGCGUCGCUU |
| [ reference std structure ] | ..........................................((.((.[[.....))......(.(((......]].............)))..)...)).....((....))(((((.((.......)).)))))..................... | |
| [ reference ext structure ] |
....................................(.{(((((.((.[[....[))).(.].(((((.(((..]].)........)).)))).))...)))}))((....))(((((((((.....)))))))))..................... () ( ) ( ) ( ) |
|
| [ predicted structure ] | .((((((((((((((((((((((..............................................................................................((.((.....)).))))))))))))))))))))))))... | |
| 3J46_p | [ FASTA input ] | GCGGGAAUAGCUCAGUUGGUAGAGCACGACCUUGCCAAGGUCGGGGUCGCGAGUUCGAGUCUCGUUUCCCGCUCCA |
| [ reference std structure ] | (((((((...((..........)).....(.........)........((((.........))))))))))).... | |
| [ reference ext structure ] |
((((((((.[[[..{.<...)<]]](((.((.......)).))).>.}aaaaaa..>A..AAAAA))))))).... ( ) ( ) |
|
| [ predicted structure ] | ............................................................................ | |
| 3J5B_1 | [ FASTA input ] | GGGUGAUUAGCUCAGCUGGGAGAGCACCUCCCUUACAAGGAGGGGGUCGGCGGUUCGAUCCCGUCAUCACCCACCA |
| [ reference std structure ] | (((((.(..((((........))))...(((.......))).......(((((.......)))))).))))).... | |
| [ reference ext structure ] |
(((((((([{{.{)<..ab..}]}}((((((.......))))))...>ccccccAB.C..CCCCC))))))).... ( ) ( ) |
|
| [ predicted structure ] | ............................................................................ | |
| 3J5N_W | [ FASTA input ] | GGCUACGUAGCUCAGUUGGUUAGAGCACAUCACUCAUAAUGAUGGGGUCACAGGUUCGAAUCCCGUCGUAGCCACCA |
| [ reference std structure ] | (((((((..(((...........))).(((((.......)))))......(.((.......)).).))))))).... | |
| [ reference ext structure ] |
(((((((([{{..)<..ab...b]}}((((((.......)))))).B.>cc.cccAB.C..CC.CC))))))).... ( ) ( ) |
|
| [ predicted structure ] | ............................................................................. | |
| 3J7A_7 | [ FASTA input ] | GGGUAAUUGGCGCAGUUGGUUAGCGCGCGGGUCUCAUAAUCCCGAGGUCGUGAGUUCGAUCCUCACAUUACCCA |
| [ reference std structure ] | .((......((...........))..(............)......(..(.........)..)....))..... | |
| [ reference ext structure ] |
(((.((.([{{..)..<...<]}}..(.(........).)...>..aa.aa>......AA.AA.))).)).... ( ) ( ) ( ) |
|
| [ predicted structure ] | .......................................................................... | |
| 3JB9_N | [ FASTA input ] | GAUCUUCGGAUCACUUUGGUCAAAUUGAAACGAUACAGAGAAGAUUAGCAUGGCCCCUGCACAAGGAUGACACUGCGACAUUGAGAGAAA |
| [ reference std structure ] | .(........)........................................(..((((.....)))..).)................... | |
| [ reference ext structure ] | ((((....))))...........................((.....))(.[[[.[(((.....))).)]]]].................. | |
| [ predicted structure ] | .......................................................................................... | |
| 3JB9_C | [ FASTA input ] | CGUCAAAGCACUUUGCAAAAGCUAACGUAUCUGUUUCUUGCCUUUUACCAGAAACAGCCGUUUGUAAGGUGUGCUAAUUUGACUGUAUAGUUUUUGUAAUCUUUU |
| [ reference std structure ] | (((((((((((((((((((......((...((((((((...........)))))))).)))))))))))))).....)))))).).................... | |
| [ reference ext structure ] |
(((((((((((((((((((......((...((((((((((.......)))))))))).)))))))))))))).....)))))).).................... () |
|
| [ predicted structure ] | ......................................................................................................... | |
| 3RKF_A | [ FASTA input ] | GGCCAUAUAACUGCGUGGAUAUAGCACGCAGGUUUCUACCGGGCACUGUAAAUGUCCGACUAUGGUC |
| [ reference std structure ] | ((((((([..(((((((.....{{)))))))(.....])((((((}}.....))))))..))))))) | |
| [ reference ext structure ] |
(((((((((.(((((((.[[[.[[)))))))).....).((((((]]()]]]))))))..))))))) ( ) ( ) ( ) ( ) ( ) ( ) |
|
| [ predicted structure ] | ................................................................... | |
| 3SD1_A | [ FASTA input ] | GGAGAGUAGAUGAUUCGCGUUAAGUGUGUGUGAAUGGGAUGUCGUCACACAACGAAGCGAGAGCGCGGUGAAUCAUUGCAUCCGCUCCA |
| [ reference std structure ] | ((((....((((((((((((......(((((((...[[[[....))))))).....((....))))).)))))))))..]]]].)))). | |
| [ reference ext structure ] |
((((((.({{{{{{{{{{{{..{{.{{{{{{{{.[.)((((].)}}}}}}}}.}}.(((..)))}}}.}}}}}}}}}.)))).))))). ( ) ( ) ( ) ( ) ( ) |
|
| [ predicted structure ] | ......................................................................................... | |
| 3UZL_B | [ FASTA input ] | GGUGGGGUUCCCGAGCGGCCAAAGGGAGCAGACUGUAAAUCUGCCGUCAUCGACUUCGAAGGUUCGAAUCCUUCCCCCACCACCA |
| [ reference std structure ] | ((.((.(..(...............).(((((.......))))).((.....))...(..((.......))..)).)).)).... | |
| [ reference ext structure ] |
(((((((..(((..(<[<..().)))(((((((.....)))))))(((...)))..)((((((]>.)>.)))))))))))).... ( ) ( ) ( ) ( ) ( ) ( ) |
|
| [ predicted structure ] | ..................................................................................... | |
| 3W1K_J | [ FASTA input ] | GGGAGUAGAUAGGCGCUGGUGUGCCUCCUAGACUUCAAAUCUACGGUCUCGCUAUUUAAGCGAGAGGUGGGUUCGAUUCCCACAUACUCCCG |
| [ reference std structure ] | (((((((....(((((..[.))))).((((((.......)))).))(((((((.....))))))).{{{{{..]....}}}}}.))))))). | |
| [ reference ext structure ] |
((((((((...((((([[{.))))).(((((((.....))))).))((((((((...)))))))).<<<<<<]}.>].>>>>>)))))))). ( ) |
|
| [ predicted structure ] | ............................................................................................ | |
| 3W3S_B | [ FASTA input ] | GGGAGAGGUUGGCCGGCUGGUGCCGCCCCGGGACUUCAAAUCCCGUGGGAGGUCCCGCAAGGGAGCUCCGGAGGGUUCGAUUCCCUCCCUCUCCCGCC |
| [ reference std structure ] | (((.((((..((.((([..(.])))))((((((.......))))).)((((.((((....)))).)))).(((((..)....))))))))).)))... | |
| [ reference ext structure ] |
(((.((((..((.(((([[()))))))((((((.......))))).)((((((((((..)))))))))).((((((]..)].))))))))).)))... ( ) ( ) |
|
| [ predicted structure ] | .................................................................................................. | |
| 3WC1_P | [ FASTA input ] | GCCAUCAUAGUAUAGUGGUCAUUAUAAAUCGUUGUGGCCGAUUAGACCCAAGUUCGAUUCUUGGUGAUGGCAC |
| [ reference std structure ] | .((((((..((............))..(..(.......)..).....(((((.......)))))))))))... | |
| [ reference ext structure ] | .((((((.([[.(.({{<..)))]]..((.(..()...).)).....aaaaaa}>.A}.AAAAA))))))... | |
| [ predicted structure ] | ......................................................................... | |
| 3WQY_C | [ FASTA input ] | GGGCUCGUAGCUCAGCGGGAGAGCGCCGCCUUUGCGAGGCGGAGGCCGCGGGUUCAAAUCCCGCCGAGUCCACCA |
| [ reference std structure ] | (((((((..((((....[..)))).((((((.....)))))).....{{{{{..]....}}}}}))))))).... | |
| [ reference ext structure ] |
(((((((([{{.{)<.ab..}]}}(((((((.....)))))))...>ccccccAB.C..CCCCC))))))).... ( ) ( ) |
|
| [ predicted structure ] | ........................................................................... | |
| 3ZEX_D | [ FASTA input ] | GGGUACGACCAUACUUGGCCGAAUGCACCAUAUCCCGUCCGAUUUGUGAAGUUAAGCGGCCACAGGCCUCGUUAGUACGGCGAUCAGUGAUGGCGCUGGAACCCGGGGUGUUGUACUCU |
| [ reference std structure ] | (((((((((....((((((((.....((.(((...(....)...)))...))....)))))).))((((((......((....(((....)))...)).....))))))))))))))). | |
| [ reference ext structure ] |
(((((((((..[.((((((((.....((((((...{.(..})..)))..)))....)))))).))(.(((((.(.(((((((.((((..)))))))))))).)))))])))))))))). ( ) ( ) ( ) ( ) ( ) |
|
| [ predicted structure ] | ....................................................................................................................... | |
| 3ZEX_C | [ FASTA input ] | AACGUGUCGCGAUGGAUGACUUGGCUUCCUAUUUCGUUGAAGAACGCAGCAAAGUGCGAUAAGUGGUAUCAAUUGCAGAAUCAUUUCAUUGCCCAAUCUUUGAACGCAAACGGCGCAUGGGAGAAGCUCUCUCGAGCCAUCCCCGUGCAUGCCACAUUUCUCAGUGUCG |
| [ reference std structure ] | .........................................((((((.[[.....)))....(((((((...(.]].).........).)))).).).)))....((.....))(((((.(.(..((((....))))..).).)))))..................... | |
| [ reference ext structure ] |
...................................[(..(.(((.((.{.(.){.)))(..}((((((..((..}..).......).)..))).))..))))].)(((..).))(((((((((.(((((....))))).)))))))))..................... ( ) () ( ) ( ) ( ) ( ) ( ) ( ) ( ) ( ) ( ) ( ) ( ) ( ) ( ) |
|
| [ predicted structure ] | ((((((((((((((((((((((................................................................................................((.((................)).)))))))))))...))))))))))))) | |
| 3ZND_W | [ FASTA input ] | GGGCCCUUAGCUUAGUCUGGUUAAAGCGAUCGGCUCAUAACCGAUUGGGCGCUGGUUCGAAUCCGGCAGGGCCCACCA |
| [ reference std structure ] | ..(........(.............)..(((...........))).......(((.......))).......)..... | |
| [ reference ext structure ] |
.((((..(..{.{<(.......>)}}..(((([(.....])))))....)(((((.......)))))...)))).... ( ) ( ) ( ) |
|
| [ predicted structure ] | .............................................................................. | |
| 4A1C_3 | [ FASTA input ] | GUUGUCGGCCAUACUAAGGUGAAAACACCGGAUCCCAUUCGAACUCCGAAGUUAAGCGCCUUAAGGCUGGGUUAGUACUAAGGUGGGGGACCGCUUGGGAAGUCCCAGUGUCGAUAGCCU |
| [ reference std structure ] | (((((((((....((((((((.....((((((...(....)...))))..))....)))))).))((((((......(((((..((....)).))))).....))))))))))))))).. | |
| [ reference ext structure ] |
((((((((({(.}((((((((....(<(((((...([[..)]].))))...>.).))))))).)))(((((..(.((((((((.(((..))))))))))))..))))).))))))))).. ( ) ( ) ( ) ( ) ( ) ( ) ( ) ( ) |
|
| [ predicted structure ] | ........................................................................................................................ | |
| 4A1C_2 | [ FASTA input ] | AGAAAAUUUUCAACGGUGGAUAUCUAGGUUCCCGUGACGAUGAAGAACGCAGCGAAAUGCGAUACGCAAUGCGAAUUGCAGAACCGCGAGUCAUCAGAUCUUUGAACGCAAGUGGUGGAGGUGUAAAAACCUUCAUGUUUGUUUCAGUGUGGAA |
| [ reference std structure ] | ............................................((((((.[[.....))).....(.((((.....]]..........).)))..)...)))....((.....))(((((........))))).................... | |
| [ reference ext structure ] |
.......................................(.<((((({((.[[....[).}..)](((((((.((..]]...)....).).)))).))..))))>))((.....))(((((........))))).................... () ( ) ( ) ( ) |
|
| [ predicted structure ] | ....((((((((((((((((((((((..............................................................................................((......)))))))))))))))))))))))).. | |
| 4AOB_A | [ FASTA input ] | GGCUUAUCAAGAGAGGGCAAGAGACUGGCUUGAUGACCCCCGGCAACCAAAAAUGGUGCCAAUUCCUGCAGAGGAAACGUUGAAAGAUGAGCCA |
| [ reference std structure ] | ((((((((....(.(((...(((.[.[[)))......))))(((..(((....))).)))...(]].](((.(....).)))..))))))))). | |
| [ reference ext structure ] |
((((((((..({(.((((.((((.<<<..))...).)))))(})..((((..))))...)...()>>>((((((..))))))..))))))))). ( ) ( ) ( ) ( ) ( ) ( ) ( ) ( ) |
|
| [ predicted structure ] | .............................................................................................. | |
| 4BY9_A | [ FASTA input ] | GCGAGCAAUGAUGAGUGAUGGGCGAACUGAGCUCGAAAGAGCAAUGAUGAGUGAUGGGCGAACUGAGCUCGC |
| [ reference std structure ] | ((((((....................(...((((....))))......).................)))))) | |
| [ reference ext structure ] |
((((((...((((.............(((((((((..)))))...)))).............)))))))))) ( ) |
|
| [ predicted structure ] | .((.........(.............).....................(.............)......)). | |
| 4C4Q_N | [ FASTA input ] | GACUAGCCGUAGUGGCGAGCUCCCUGGGUGGUCUAAGUCCUGAGUACAGGACAGUCGUCAGUAGUUCGACGUGAGCACUAGCCCACCUCGAGAUGCUACGUGGACGAGGGCAUGCCCAAGACACACCUUAACCCUGGCGGGGGUCGCUAGGGUGAAAUCACAUUAUGUGAUGGGGGUACGACCUGAUAGGGUGCUGCAGAGGCCCACUAGCAGGCUAGUAUAAAAAUCUCUGC |
| [ reference std structure ] | .(((((((.((((((((.((((((.(((((((((..((((((....))))))..(((((..((((((((.(((.((....)).))).))))...))))....)))))(((....))).)))).)))))..((((((((((...))))))))))....(((((...))))).)))))).)).(((....))).((..[[[[.))))))))...))))))).........]]]]. | |
| [ reference ext structure ] |
.(((((((.((((((((.((((((.(((((((((..((((((....))))))..(((((.(((((((((.(((((((..))))))).))))...)))))...)))))(((....))).))))).))))..((((((((((...))))))))))....(((((...))))).)))))).))(((((..)))))((..[[[[[))))))))...)))))))........]]]]]. ( ) ( ) ( ) ( ) |
|
| [ predicted structure ] | .(((((((.((((((((.((((((..((((((((..((((((....))))))..(((((.((((.((((.(((.(.......)))).))))....))))...)))))(((....))).)))).))))....((((((((.....))))))))....((((((...)))))))))))).)).((......)).((.......))))))))...))))))).............. | |
| 4CXG_Y | [ FASTA input ] | GCGGAUUUAGCUCAGUUGGGAGAGCGCCGGUCUCCAAAACCGGAGGUCCUGUGUUCGAUCCACAGAAUUCGCACCA |
| [ reference std structure ] | (((((((..((.(.....[..).)).(((((.......))))).....{{{{{..]....}}}}}))))))).... | |
| [ reference ext structure ] |
(((((((([{{.{)<a.ab..}]}}.((((((.....))))))....>ccccccAB.CA.CCCCC))))))).... ( ) ( ) |
|
| [ predicted structure ] | ............................................................................ | |
| 4ENB_A | [ FASTA input ] | GGCGAUGAGGCCCGCCCAAACUGCCCUGAAAAGGGCUGAUGGCCUCUACUG |
| [ reference std structure ] | ((((..[[[[[[))))......(((((....)))))....]]]]]]..... | |
| [ reference ext structure ] |
{((((.<<<<<<)).}...)..((((((..))))))).(.>>>>>>).... ( ) |
|
| [ predicted structure ] | ................................................... | |
| 4ENC_A | [ FASTA input ] | GGGCGAUGAGGCCCGCCCAAACUGCCCUGAAAAGGGCUGAUGGCCUCUACUG |
| [ reference std structure ] | .((((..[[[[[[))))......(((((....)))))....]]]]]]..... | |
| [ reference ext structure ] |
.{((((.<<<<<<)).}...)..((((((..))))))).(.>>>>>>).... ( ) |
|
| [ predicted structure ] | .................................................... | |
| 4FRG_B | [ FASTA input ] | GGCCUAAAAGCAUAGUGGGAAAGUGACGUGAAAUUCGUCCAGAUGCGAAAGCAUACGGUUAUACUCCGAAUGCCACCUAGGCCA |
| [ reference std structure ] | ((((((........((((....(.((((.......)))))((((((....)))).[[[.....))]]]....)))).)))))). | |
| [ reference ext structure ] |
((((((...{(.}.((((...<(.(((([(..]..)))))(>(((((..)))))(((((.).).)))))..))))).)))))). ( ) |
|
| [ predicted structure ] | .................................................................................... | |
| 4FRN_A | [ FASTA input ] | GGGCUAAAAGCAUGGUGGGAAAGUGACGUGUAAUUCGUCCACAUUACUUGAUACGGUUAUACUCCGAAUGCCACCUAGCCCAAAGUAGAGCAAGGAGACUCA |
| [ reference std structure ] | .(((((.......(((((....(.((((.......)))))(.(([.[[[.)).{{{......)}}}....)))))))))).......(((.]]]...]))). | |
| [ reference ext structure ] |
.(((((...{(.}(((((....(.(((([(..]..)))))(.(.<.<<<<).aaaa(.).).)AAAA..))))))))))).......(((>>>>...>))). ( ) ( ) |
|
| [ predicted structure ] | ...................................................................................................... | |
| 4JF2_A | [ FASTA input ] | GAACCGCGAAAGCGGUUCCACGACGAUACUUAUUUCCUUUGAUCGUCGUUAUUACUGGCUUCGGCCACAAAGGAGA |
| [ reference std structure ] | (((((((....))))))).((((((((.......[[[[[..))))))))......((((....))))..]]]]].. | |
| [ reference ext structure ] |
((((((((..)))))))).(((((((((.((...<<<...)))))))))....(.(((((..)))))).))>>>.. ( ) ( ) ( ) |
|
| [ predicted structure ] | (((((........)))))...(((((((............)))))))........((((....))))......... | |
| 4KR2_C | [ FASTA input ] | CGCCGCUGGUGUAGUGGUAUCAUGCAAGAUUCCCAUUCUUGCGACCCGGGUUCGAUUCCCGGGCGGCG |
| [ reference std structure ] | ((((((..(((.....[...)))((((((.......))))))....{{{{..]....}}}}.)))))) | |
| [ reference ext structure ] |
(((((((.[[[[){.<a..]]]](((((((.....)))))))..}bbbbbb>A.B..BBBBB)))))) ( ) ( ) |
|
| [ predicted structure ] | .................................................................... | |
| 4KR3_C | [ FASTA input ] | CGCCGCUGGUGUAGUGGUAUCAUGCAAGAUUCCCAUUCUUGCGACCCGGGUUCGAUUCCCGGGCGGCGC |
| [ reference std structure ] |
((((((..(((.....[...)))((((((.......))))))...{{{{{..]....}}}}})))))). ( ) |
|
| [ reference ext structure ] |
(((((((.[[[[){<<a..]]]](((((((.....)))))))..}bbbbbb>A.B>.BBBBB)))))). ( ) ( ) |
|
| [ predicted structure ] | ..................................................................... | |
| 4L81_A | [ FASTA input ] | GGAUCACGAGGGGGAGACCCCGGCAACCUGGGACGGACACCCAAGGUGCUCACACCGGAGACGGUGGAUCCGGCCCGAGAGGGCAACGAAGUCCGU |
| [ reference std structure ] | (((((....((((....))))(((..((((((.[[[[..))).))).)))..(((((....)))))))))).((((....)))).......]]]]. | |
| [ reference ext structure ] |
(((((..(((((((..)))))[)).()(((((.{{{{..))).))....]..((((((..)))))))))))((((((..))))))......}}}}. ( ) ( ) ( ) ( ) ( ) ( ) () |
|
| [ predicted structure ] | ................................................................................................ | |
| 4LCK_F | [ FASTA input ] | GGGUGCGAUGAGAAGAAGAGUAUUAAGGAUUUACUAUGAUUAGCGACUCUAGGAUAGUGAAAGCUAGAGGAUAGUAACCUUAAGAAGGCACUUCGAGCACCC |
| [ reference std structure ] | ((((((.....((.........(..(.(...(.((.(......(..[[[[[...........).]]]]].).)).).).)..).........))..)))))) | |
| [ reference ext structure ] |
((((((...(.((.....(.(((..(((..((.(((((....([([{{{{{{....).]..)]}}}}}}))))).)))))..))))......)).))))))) ( ) ( ) ( ) |
|
| [ predicted structure ] | (((.....................((((((..((((((........(((((......(...)..)))))))))))))))))..................))) | |
| 4MGN_C | [ FASTA input ] | GAAUCAAUAGUAGUUAACCCUCUCUUCCGAAGCGAGCCGGGGGCGGUGGGAGCCCGGUGAAGACGGUUAAUGAAACGGCAGUUCC |
| [ reference std structure ] | (((.........(((((((...(((((.....(..[[[[[[..........)]]]]]]))))).)))))))..........))). | |
| [ reference ext structure ] |
(((.....(.(((((((((...(((((....([([{{{{{{....).]..)]}}}}}}))))).)))))))))).......))). ( ) |
|
| [ predicted structure ] | (((...........(((((..((((((........(((((......(...)..)))))))))))))))).............))) | |
| 4MGN_B | [ FASTA input ] | CGGAAGUAGUUCAGUGGUAGAACACCACCUUGCCAAGGUGGGGGUCGCGGGUUCGAGUCCCGUCUUCCGCU |
| [ reference std structure ] | ((((((..((((....[..)))).(((((.......))))).....{{{{{..]....}}}}})))))).. | |
| [ reference ext structure ] |
((((((([{{.{)<.a().}]}}((((((.......))))))...>bbbbbbA..B..BBBBB)))))).. ( ) ( ) ( ) |
|
| [ predicted structure ] | ....................................................................... | |
| 4MGN_D | [ FASTA input ] | CGGAAGUAGUUCAGUGGUAGAACACCACCUUGCCAAGGUGGGGGUCGCGGGUUCGAGUCCCGUCUUCCGCUC |
| [ reference std structure ] | ((((((..((((....[..)))).(((((.......))))).....{{{{{..]....}}}}}))))))... | |
| [ reference ext structure ] |
((((((([{{.{)<.a().}]}}((((((.......))))))...>bbbbbbA..B..BBBBB))))))... ( ) ( ) ( ) |
|
| [ predicted structure ] | ........................................................................ | |
| 4OQU_A | [ FASTA input ] | GGAUCACGAGGGGGAGACCCCGGCAACCUGGGACGGACACCCAAGGUGCUCACACCGGAGACGGUGGAUCCGGCCCGAGAGGGCAACGAAGGUCCGA |
| [ reference std structure ] | (((((....((((....))))(((..((((((.[[[[[.))).))).)))..(((((....)))))))))).((((....)))).......]]]]]. | |
| [ reference ext structure ] |
(((((..((((((....))))[))..((((((.{{{{{.))).)))...]..(((((....))))))))))((((((..))))))......}}}}}. ( ) ( ) ( ) ( ) ( ) () |
|
| [ predicted structure ] | ................................................................................................. | |
| 4P5J_A | [ FASTA input ] | AGCUCGCCAGUUAGCGAGGUCUGUCUCGACACGACAGAUAAUCGGGUGCAACUCCCGCCCCUCUUCCGAGGGUCAUCGGAACC |
| [ reference std structure ] | .((((((..[...)))))(((((((.......)))))))...{{{{..]....}}}}(((...{{{{{{))).).}}}}}}.. | |
| [ reference ext structure ] |
.(((((([[()..)))))(((((((.......)))))))...{{{{{]..}].}}}}(((..{{{{{{{))).).}}}}}}.} () ( ) ( ) |
|
| [ predicted structure ] | ..(((((......))))).((((((.......)))))).....(((.......))).......((((((......)))))).. | |
| 4P8Z_A | [ FASTA input ] | GGUUGGGUUGGGAAGUAUCAUGGCUAAUCACCAUGAUGCAAUCGGGUUGAACACUUAAUUGGGUUAAAACGGUGGGGGACGAUCCCGUAACAUCCGUCCUAACGGCGACAGACUGCACGGCCCUGCCUCUUAGGUGUGUCCAAUGAACAGUCGUUCCGAAAGGAAGCAUCCGGUAUCCCAAGACAAUC |
| [ reference std structure ] | (((((..(((((..(((((((((...[[[.)))))))))..{{{{.{{{.{{{{......{{{{{...{{{{..{{{...]]]}}}.......}}}}((....)).....<<<<<...}}}}}.(((.....)))}}}}.}}}....>>>>>.((((....))))....}}}}...)))))..))))) | |
| [ reference ext structure ] |
((((((((((((..(((((((((...[.[.))))))))).{<<<<<<<<<<<<<(..<)<<<<<<.<.<<<<a.aaa...]].AAA...>.A..>>>aa...>AA....aaaaaa.()>>>>>>a.(.....)>A>>>>>>>>>.}.AAAAA.(((((..)))))..A.>>>>...)))))))))))) ( ) ( ) ( ) ( ) ( ) ( ) ( ) ( ) |
|
| [ predicted structure ] | .................(((.............)))....(((((.((((((((.......((((...((((..((((....)))).......))))((....)).............))))..((((...))))))))))))..........((((....))))....))))).............. | |
| 4QK8_A | [ FASTA input ] | GUUGCCGAAUCCGAAAGGUACGGAGGAACCGCUUUUUGGGGUUAAUCUGCAGUGAAGCUGCAGUAGGGAUACCUUCUGUCCCGCACCCGACAGCUAACUCCGGAGGCAAUAAAGGAAGGA |
| [ reference std structure ] | ..((((....((....))..(((((....(.....(.[((((....((((((.....))))))..(((((.{{{{{{)))))..)))).)].)....)))))..)))).....}}}}}}. | |
| [ reference ext structure ] |
..((((((.((((..))))[.(((((..((.....(.[((((.(.(((((((.....)))))))[)((((.{{{{{{)))).].)))).)].))..))))))]))))).....}}}}}}. ( ) ( ) ( ) ( ) ( ) ( ) |
|
| [ predicted structure ] | ........................................................................................................................ | |
| 4TZY_X | [ FASTA input ] | GGGAAGAUAUAAUCCUAAUGAUAUGGUUUGGGAGUUUCUACCAAGAGCCUUAAACUCUUGAUUAUCUUCCC |
| [ reference std structure ] | ((((((((((..((((((......[[.))))))[.....)]{{{{{{]].....}}}}}}..))))))))) | |
| [ reference ext structure ] |
(((((((((((.(((((((.[[..[[)))))))).....).{{{{{{]]...]]}}}}}}..))))))))) ( ) ( ) ( ) ( ) ( ) |
|
| [ predicted structure ] | ....................................................................... | |
| 4UE4_A | [ FASTA input ] | GCCGUGCUAAGCGGGGAGGUAGCGGUGCCCUGUACCUGCAAUCCGCUCUAGCAGGGCCGAAUCCCUUCUCGAGGUUCGUUUACUUUAAGGCCUGCCUUAAGUAAGUGGUGUUGACGUUUGGGUCCUGCGCAAUGGGAAUUCAUGAACCAUGUCAGGUCCGGAAGGAAGCAGCAUUAAGUGAAACCUCUCAUGUGCCGCAGGGUUGCCUGGGCCGAGCUAACUGCUUAAGUAACGCUAGGGUAGCGAAUCGACAGAAGGUGCACGGU |
| [ reference std structure ] |
(((((((...((((((.......[[..))))...{{{{{...]]......}}}}}))......((((((...((((((.((((((((.(..((((.(((((((.(((((.(((..(((((((.((((((((..((((.(((((.....((((....(((....)))....))))...)))).)..))))...)).))))))....)))))))))))))).)))))))))))..))))))))))))))))...)))))).))))))) ( ) |
|
| [ reference ext structure ] |
(((((((((((((((((..([[)[[[)))))(.){{{{{.].]].]]...}}}}})))))(..(((((((((((((((.((((((((.(..((((.(((((((.(((((({)(..(((((((.((((((((..(((((((((((....(((((.(((((....)))).))))))..))))).).)))))...)).))))))....)))))))).})))).)))))))))))..))))))))))))))))))))))))))))))))) ( ) ( ) ( ) ( ) ( ) ( ) ( ) |
|
| [ predicted structure ] | .......................................................................................................................................................................................................................................................................... | |
| 4UE5_A | [ FASTA input ] | GCCGGGCGCGGUGGCGCGCGCCUGUAGUCCCAGCUACUCGGGAGGCUGAGGCAGGAGGAUCGCUUGAGCCCAGGAGUUCUGGGCUGCAGUGCGCUAUGCCGAUCGGGUGUCCGCACUAAGUUCGGCAUCAAUAUGGUGACCUCCCGGGAGCGGGGGACCACCAGGUUGCCUAAGGAGGGGUGAACCGGCCCAGGUCGGAAACGGAGCAGGUCAAAACUCCCGUGCUGAUCAGUAGUGGGAUCGCGCCUGUGAAUAGCCACUGCACUCCAGCCUGUGCAACAUAGCGAGACCCCGUCUCU |
| [ reference std structure ] | ((((((((((..[...)))))))....{{{{.....]..}}}}))).(((((.((....(((((...((.((((.....((((..((((((.(((((......(((((((((.(((((.(.(((((.(((.(..((.(..((((((....))))))..).))..).))......(.(((((.....((((....(((....)))....))))...))))))).))))).)..)))))))...)))))))...)))))))))))..)))).)))).)).....)))))...)).))))). | |
| [ reference ext structure ] |
(((((((((((.[{).)))))))....<<<<.....]}.>>>>))).((((((((.(.)(((((..((..((((...(<)(((.(((((((.(((((......(((((((((.((((((((((((((((((((.((.(((((((((..<a)))))))))).)).))))......b.bbbbbb....bbbbbbbbbb....>ABBBBBBBBBB..BBBBBBB)))))))))).)))))))...)))))))...)))))))))))).))).>)))).).)....)))))...)))))))). ( ) ( ) ( ) ( ) ( ) ( ) ( ) ( ) ( ) ( ) ( ) ( ) |
|
| [ predicted structure ] | (((.((((.(......).)))).....(((..(...)...)))))).(((((.((....(((((...((.((((....(((.((((((((...((((......(((((((((.(((((.((((((((.((((.(((.(((((((((....))))))))).))).))))......(.(((((......(((...((((....)))..).)))....)))))).))))))))..))))))))...))))))...))))..)))))))).))))))).)).....)))))...)).))))). | |
| 4W24_7 | [ FASTA input ] | GUCUACGGCCAUACCACCCUGAACGCGCCCGAUCUCGUCUGAUCUCGGAAGCUAAGCAGGGUCGGGCCUGGUUAGUACUUGGAUGGGAGACCGCCUGGGAAUACCGGGUGCUGUAGGCUU |
| [ reference std structure ] | ((((((.......((...((......((((((...(....)...))))..)).....))....))((((((......((.((..((....)).)).)).....))))))...)))))).. | |
| [ reference ext structure ] |
(((((...(...)(((.((((.....((((((...(....)...))))..))....)))))..))((((((..(()(((((((.(((..)))))))))).)..))))))...).)))).. () ( ) ( ) ( ) ( ) ( ) ( ) ( ) ( ) ( ) ( ) ( ) |
|
| [ predicted structure ] | ........................................................................................................................ | |
| 4W24_8 | [ FASTA input ] | CGACUCUUAGCGGUGGAUCACUCGGCUCGUGCGUCGAUGAAGAACGCAGCUAGCUGCGAGAAUUAAUGUGAAUUGCAGGACACAUUGAUCAUCGACACUUCGAACGCACUUGCGGCCCCGGGUUCCUCCCGGGGCUACGCCUGUCUGAGCGUCGCU |
| [ reference std structure ] | ............................................(((.[[....[)))...]...{{{......]].............}}}.............((....))(.....((.......)).....).................... | |
| [ reference ext structure ] |
....................................(..(.(.(.((.[[....[))).{.]...{{{{{{{..]]..}.......}}}}}}...}....))..)((....))(((...((((.)..)))...))).................... () ( ) ( ) ( ) |
|
| [ predicted structure ] | .((((((((((((((((((((((..............................................................................................((.((.....)).)))))))))))))))))))))))).. | |
| 4W28_6 | [ FASTA input ] | UGCCCGGUAGCCCCGAAGGUAGAGCAGGGGAUUGAAAAUCCCCGUGUCCUUGGUUCGAUUCCGAGUCCGGGCACCA |
| [ reference std structure ] |
.(.((((....(.(.[{....).)..((((.........)))).......<<.(...)]}.>.>..)))).).... ( ) |
|
| [ reference ext structure ] |
.(.((((....(.([{(.{).).).(((((.........)))))...]<.<<<<.}.>}.>>.>.>)))))..... ( ) ( ) ( ) ( ) () |
|
| [ predicted structure ] | ............................................................................ | |
| 4WF9_Y | [ FASTA input ] | UCUGGUGACUAUAGCAAGGAGGUCACACCUGUUCCCAUGCCGAACACAGAAGUUAAGGUCUUUAGCGACGAUGGUAGCCAACUUACGUUCCGCUAGAGUAGAACGUUGCCAGGC |
| [ reference std structure ] | .((.(..(.....(((((((......(..(((.............)))....).....))))).))..........(................)............)..).)). | |
| [ reference ext structure ] |
()(((..(.....((((((((....(([((((...([....).].))))...).].))))))).)).((((...(((((((.(....).)))))))...))))...)..))).. ( ) ( ) ( ) ( ) ( ) ( ) ( ) ( ) ( ) |
|
| [ predicted structure ] | .................................................................................................................. | |
| 4WFL_A | [ FASTA input ] | GCCGUGCUAAGCGGGGAGGUAGCGGUGCCCUGUACCUGCAAUCCGCUCUAGCAGGGCCGAAUCCCUUCUCGAGGUUCGGUAACGAAUCGACAGAAGGUGCACGGU |
| [ reference std structure ] | (((((((...((((((....[[[[[..))))...{{{{{...]]]]]...}}}}}))......((((((...((((((....))))))...)))))).))))))) | |
| [ reference ext structure ] |
(((((((((((((((((...[[[[[.)))))(.){{{{{]...]]]]...}}}}})))))(..((((((((((((((((..)))))))))))))))))))))))) ( ) ( ) ( ) |
|
| [ predicted structure ] | ......................................................................................................... | |
| 4WJ4_B | [ FASTA input ] | UCCGCGAUAGCUCAGUCGGUAGAGCAAAUGACUGUUAAUCAUUGGGUCCCUGGUUCGAGUCCAGGUCGCGGAGCCA |
| [ reference std structure ] | (((((((..((((.....[..)))).(((((.......))))).....{{{{{..]....}}}}}))))))).... | |
| [ reference ext structure ] |
(((((((([{{.{)<..ab..}]}}(((((((.....)))))))...>ccccccAB.C..CCCCC))))))).... ( ) ( ) |
|
| [ predicted structure ] | ............................................................................ | |
| 4X0B_B | [ FASTA input ] | GGGCCAGGUAGCUCAGUUGGUAGAGCACUGGACUGAAAAUCCAGGUGUCGGCGGUUCGAUUCCGCCCCUGGCCCACC |
| [ reference std structure ] | .((((..(..((((........)))).(...............).....(((((.......))))))..)))).... | |
| [ reference ext structure ] |
.(((((.(([{{.{)<...a..}]}}.(...............)....>bbbbbb.A.B..BBBBB).))))).... ( ) ( ) |
|
| [ predicted structure ] | ............................................................................. | |
| 4XW7_A | [ FASTA input ] | GGGUCGUGACUGGCGAACAGGUGGGAAACCACCGGGGAGCGACCCUUGCCGCCCGCCUGGGCAA |
| [ reference std structure ] | (((((((..((........(((((....))))).))..)))))))(((((.........))))) | |
| [ reference ext structure ] | ((((((((((((......[[[[[[...)]]]]]])))))))))))(((((.........))))) | |
| [ predicted structure ] | ................................................................ | |
| 4ZNP_A | [ FASTA input ] | GGGAUACAGGACUGGCGGAUUAGUGGGAAACCACGUGGACUGUAUCCGAAAAAAAGCCGACCGCCUGGGCAUC |
| [ reference std structure ] | .((((((((..(.[[[[[....((((....))))..)..))))))))........{{{..]]]]]..}}}... | |
| [ reference ext structure ] |
(((((((((((((([{{{....{{{{...)}}}}.))))))))))))).......<<<.]}}}....>>>... ( ) ( ) |
|
| [ predicted structure ] | ......................................................................... | |
| 5CCB_N | [ FASTA input ] | GGCCCGGAUAGCUCAGUCGGUAGAGCAUCAGACUUUUAAUCUGAGGGUCCAGGGUUCAAGUCCCUGUUCGGGCGCCA |
| [ reference std structure ] | .(((((((..((((........)))).(((((.(...).))))).....(((((.......)))))))))))).... | |
| [ reference ext structure ] |
((((((((([{{.{).......}]}}((((((((...))))))))....(((((.......)))))))))))))... ( ) ( ) ( ) ( ) ( ) |
|
| [ predicted structure ] | ............................................................................. | |
| 5DI4_A | [ FASTA input ] | GGGUACUUAAGCCCACUGAUGAGUCGCUGGGAUGCGACGAAACGCCCA |
| [ reference std structure ] | ...............(....).(((((......))))).......... | |
| [ reference ext structure ] | .........(.....(....)[[[[[[[)..].]]]]]]......... | |
| [ predicted structure ] | .(((((....)))))(....).((((........)))).......... |
- N/A - RNA 2D structure in Vienna format could not have been generated (most likely due to difficult to represent pseudoknot structure). Check secondary structure file for details.
- std - standard base pair definition
- ext - extended base pair definition