CompaRNA - on-line benchmarks of RNA structure prediction methods
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RNA Secondary Structure Atlas - PDB - RDfolder



2K5Z_A [ FASTA input ] GGUCUACAUUGCUGUUGUCGUGUGUGACC
[ reference std structure ] (((((((((.((....)).))))).))))
[ reference ext structure ] (((((((((.((....)).))))).))))
[ predicted structure ] ((((.(((............)))..))))
2K63_A [ FASTA input ] GGAGUAUGUAUUGGCACUGAGCAUACUCC
[ reference std structure ] (((((((((...........)))))))))
[ reference ext structure ] ((((((((((.........))))))))))
[ predicted structure ] ((((((((.............))))))))
2K66_A [ FASTA input ] GGAGUAUGUGAAAGCAUACUCC
[ reference std structure ] (((((((((....)))))))))
[ reference ext structure ] ((((((((((..))))))))))
[ predicted structure ] ((((((((......))))))))
2KD8_A [ FASTA input ] GGAUGGUUGGGGUUAGCCAUCC
[ reference std structure ] (((((((((....)))))))))
[ reference ext structure ] (((((((((....)))))))))
[ predicted structure ] ((((((((......))))))))
2KDQ_B [ FASTA input ] GGCAGAUCUGAGCCUGGGAGCUCUCUGCC
[ reference std structure ] ((((((...((((......))))))))))
[ reference ext structure ] (((((([..(]((......)).)))))))
          (          )       
[ predicted structure ] ((((((...((((......))))))))))
2KE6_A [ FASTA input ] GGCUUGAUUGUAUUUUUAAAUUAAUUCUUAAAAACUACAAAUUAAGCC
[ reference std structure ] (((((.(((((((((((((........))))))).))).))).)))))
[ reference ext structure ] (((((.(((((((((((((.(....).))))))).))).))).)))))
[ predicted structure ] (((((((((...(((((((........))))))).....)))))))))
2KEZ_A [ FASTA input ] GGUUCCCCUGCAUAAGGAUGAACC
[ reference std structure ] (((((.(((.....)))..)))))
[ reference ext structure ] ((((((((((...)))).))))))
[ predicted structure ] (((((.(((.....)))..)))))
2KFC_A [ FASTA input ] GGAGAGGUUCUAGUUAUACCCUCUAUAAAAAACUAA
[ reference std structure ] ..(((((...[[[......)))))........]].]
[ reference ext structure ] ..({a((.(.<<(.....)))(})..A)...).>.>
            (                   )   
                   (          )     
                    (       )       
               (                 )  
                       ()           
      (                      )      
    (                )              
                      (   )         
            (    )                  
      ( )                           
[ predicted structure ] ..(((((............)))))............
2KGP_A [ FASTA input ] GGCAGUGUGAGUACCUUCACACGUC
[ reference std structure ] (((.((((((......)))))))))
[ reference ext structure ] (((.((((((......)))))))))
[ predicted structure ] (((.((((((......)))))))))
2KMJ_A [ FASTA input ] GGCCAGAUUGAGCUUCGGCUCUCUGGUC
[ reference std structure ] (((((((..((((....)))))))))))
[ reference ext structure ] (((((((..((((....)))))))))))
[ predicted structure ] (((((((..((((....)))))))))))
2KPV_A [ FASTA input ] GGAGGUAGUAGGUCGAAAGACCGUUCUACACUCC
[ reference std structure ] ((((((((.(((((....)))).).)))).))))
[ reference ext structure ] ((((((((.(((((....)))).).)))).))))
[ predicted structure ] ((((((((..((((....))))...)))).))))
2KU0_A [ FASTA input ] GGAGGAACUACUGUCUUCCUUCGGGUCGUGCAGCCUCC
[ reference std structure ] (((((.....(((((..((....))..).)))))))))
[ reference ext structure ] ((((((..).((((((((((..)))))).)))))))))
[ predicted structure ] (((((((........)))))))................
2KUR_A [ FASTA input ] GGCUUGAUUGUAUUAUUAAAUUAAUUCUUAAUAACUACAAAUUAAGCC
[ reference std structure ] (((((((((((((((((((........))))))).))).)))))))))
[ reference ext structure ] (((((((((((((((((((((....))))))))).))).)))))))))
[ predicted structure ] (((((((((...(((((((........))))))).....)))))))))
2KUU_A [ FASTA input ] GGCUUGAUUGUAUGUGUAAAUUAAUUCUUACACACUACAAAUUAAGCC
[ reference std structure ] (((((.(((((((((((((........))))))).))).))).)))))
[ reference ext structure ] (((((.(((((((((((((((....))))))))).))).))).)))))
                    (     )                     
[ predicted structure ] (((((((((...(((((((........))))))).....)))))))))
2KUV_A [ FASTA input ] GGCUCGAUUGUAUUUUUAAAUUAAUUCUUAAAAACUACAAAUCGAGCC
[ reference std structure ] (((((((((((((((((((........))))))).))).)))))))))
[ reference ext structure ] (((((((((((((((((((((....))))))))).))).)))))))))
                    (     )                     
[ predicted structure ] (((((((((...(((((((........))))))).....)))))))))
2KUW_A [ FASTA input ] GGGGUUGGUGUAUUUUUAAAUUAAUUCUUAAAAACUACAAUCAGCUCC
[ reference std structure ] (((((((((((.(((((((........)))))))..)).)))))))))
[ reference ext structure ] (((((((((((((((((((.(....).))))))).))).)))))))))
                    (     )                     
[ predicted structure ] (((((((((...(((((((........))))))).....)))))))))
2KX8_A [ FASTA input ] GGGAAAUGAGGCGCUGCAUGUGGCAGUCUGCCUUUCUUUCCC
[ reference std structure ] ((((((.((((((((((.....)))))..)))))..))))))
[ reference ext structure ] (((((((((((((((((.....)))))..))))).)))))))
         (                 )              
[ predicted structure ] ((((((..((((.((((.....))))...))))...))))))
2KXM_A [ FASTA input ] GGCUGCUUGUCCUUUAAUGGUCCAGUC
[ reference std structure ] (((((...(.((......)).))))))
[ reference ext structure ] (((((...(((((....))))))))))
[ predicted structure ] (((((.................)))))
2KZL_A [ FASTA input ] GGGAGUAAAGAUUGAGACAAGUAGGACUUCGGUCCGAAUACACUCAUGAACUCCC
[ reference std structure ] .(((((......((((.......((((....)))).......))))...))))).
[ reference ext structure ] ((((((...((.((((...(.((((((....)))))))....)))).))))))))
[ predicted structure ] ((((((......((((....(((((((....))))...))).))))...))))))
2L1F_A [ FASTA input ] GGCGGACCCGUGGUGGAACAGACGUGUUCGGAACACCCGGCCGCAACCCUGGGAGACGUCCCAGG
[ reference std structure ] .((((..(((.(((((((((....)))))....)))))))))))...(((((((....)))))))
[ reference ext structure ] .((((.()((.(((((((((....)))))....)))))).))))...(((((((....)))))))
       (                               )                         
[ predicted structure ] .............(((....(((((..........(((((........)))))..))))))))..
2L1F_B [ FASTA input ] GGCGGACCCGUGGUGGAACAGACGUGUUCGGAACACCCGGCCGCAACCCUGGGAGACGUCCCAGGG
[ reference std structure ] .((((..(((.(((((((((....)))))....)))))))))))..((((((((....))))))))
[ reference ext structure ] .((((.()((.(((((((((....)))))....)))))).))))..((((((((....))))))))
       (                               )                          
[ predicted structure ] .((((..(((.(((((((((....)))))....)))))))))))..((((((((....))))))))
2L2K_A [ FASTA input ] GGUAAGGUGGGUGGAAUCCUUCGGGAUCCCACCUACCCUGCC
[ reference std structure ] ((((.(((((((((.((((....)))).))))))))).))))
[ reference ext structure ] ((((((((((((((.(((((..))))).))))))))))))))
[ predicted structure ] ((((.(((((((((.((((....)))).))))))))).))))
2L3C_B [ FASTA input ] GGUAGUAUAACAAUAUCCGUGUUGUUAUAGUACC
[ reference std structure ] ((((.((((((((((....)))))))))).))))
[ reference ext structure ] ((((((((((((((((..))))))))))))))))
               (   )              
[ predicted structure ] ((((.((((((((((....)))))))))).))))
2L3E_A [ FASTA input ] GGCUUUUGCUCCCCGUGCUUCGGCACGGAAAAGCC
[ reference std structure ] (((((((......(((((....))))).)))))))
[ reference ext structure ] (((((((......((((((..)))))).)))))))
[ predicted structure ] (((((((.....((((((....)))))))))))))
2L3J_B [ FASTA input ] GGCAUUAAGGUGGGUGGAAUAGUAUAACAAUAUGCUAAAUGUUGUUAUAGUAUCCCACCUACCCUGAUGCC
[ reference std structure ] (((((((.(((((((((.(((.(((((((((((.....))))))))))).))).))))))))).)))))))
[ reference ext structure ] ((((((((((((((((((((((((((((((((((...))))))))))))))))))))))))))))))))))
[ predicted structure ] (((((((.(((((((((.(((.(((((((((((.....))))))))))).))).))))))))).)))))))
2L5Z_A [ FASTA input ] GAGCUGCAGCACGAAAGUGACGGCUC
[ reference std structure ] ((((((...(((....))).))))))
[ reference ext structure ] (((((((.)((((..)))).))))))
        (          )      
[ predicted structure ] ((((((...(((....))).))))))
2L94_A [ FASTA input ] GGGAAGAUCUGGCCUUCCCACAAGGGAAGGCCAGGGAAUCUUCCC
[ reference std structure ] ((((((((.((((((((((....))))))))))....))))))))
[ reference ext structure ] ((((((((((((((((((((..))))))))))))...))))))))
[ predicted structure ] (((((((((((((((((((....)))))))))))...))))))))
2LA5_A [ FASTA input ] GCUGCGGUGUGGAAGGAGUGGCUGGGUUGCGCAGCG
[ reference std structure ] (((((.((....................))))))).
[ reference ext structure ] ((((((<<).[(..{a.(.}A..]))..>>))))).
        (                )          
                    (   )           
     (           )                  
                   (   )            
           (   )                    
          (   )                     
[ predicted structure ] ((((((.......................)))))).
2LBS_A [ FASTA input ] GGGAUACCAUGUUCAAGUGAACGUGGUAUCUC
[ reference std structure ] ((((((((((((((....))))))))))))))
[ reference ext structure ] ((((((((((((((....))))))))))))))
[ predicted structure ] ((((((((((((((....))))))))))))))
2LC8_A [ FASTA input ] GGUCAGGGUCAGGAGCCCCCCCCUGAACCCAGGAUAACCCUCAAAGUCGGGGGGCA
[ reference std structure ] .(((.((((((((.[[[[[[[)))).))))..))).............]]]]]]].
[ reference ext structure ] .((((((((((((({{{{{.[)))).))))).))).............])}}}}}.
                   (                             )      
[ predicted structure ] .....(((.......)))((((((((....(((.....))).....))))))))..
2LDL_A [ FASTA input ] GGAUCCAUUCGAUUAGUGAACGGAUCC
[ reference std structure ] ((((((.(((.......))).))))))
[ reference ext structure ] ((((((((((.......))))))))))
     (                )    
[ predicted structure ] ((((((.(((.......))).))))))
2LDT_A [ FASTA input ] GGGGAGUACGGCCGCAAGGUUAAAACUCCCC
[ reference std structure ] (((((((..((((....))))...)))))))
[ reference ext structure ] ((((((.(.(((((..))))).).).)))))
     (                   )     
            (     )            
      (                 )      
[ predicted structure ] (((((((.................)))))))
2LK3_A [ FASTA input ] GGCUUAGAUCAGAAAUGAUCAGCC
[ reference std structure ] ((((..(((((....)))))))))
[ reference ext structure ] ((((..((((((..))))))))))
[ predicted structure ] ((((..(((((....)))))))))
2LU0_A [ FASTA input ] GGAAUAUGCUCAACGAAAGUGAAUCAGCUUCGGCUGAGAGCUAAGUUCC
[ reference std structure ] (((((..((((.((....))...(((((....)))))))))...)))))
[ reference ext structure ] (((((..((((.((....))...(((((....)))))))))...)))))
[ predicted structure ] .........................((((.........)))).......
2LUN_A [ FASTA input ] GGGCAGUGAUGCUUCGGCAUAUCAGCCC
[ reference std structure ] ((((.(...(((....)))...).))))
[ reference ext structure ] ((((.(.(((((....))))).).))))
[ predicted structure ] ((((..((((..........))))))))
2LV0_A [ FASTA input ] GGGCUAAUGUUGAAAAAUUAGCCC
[ reference std structure ] (((((((..........)))))))
[ reference ext structure ] (((((((.(......).)))))))
[ predicted structure ] ((((((((........))))))))
2M12_A [ FASTA input ] GGGUGUAUUGGAAAUGAGCACCC
[ reference std structure ] ((((((...........))))))
[ reference ext structure ] ((((((...........))))))
[ predicted structure ] (((((.(((...)))...)))))
2M57_A [ FASTA input ] GGAGCCGUAUGCGGUAGUUCCGCACGUACGGAUCU
[ reference std structure ] ((..((((..((((.....))))....))))..))
[ reference ext structure ] ((..((((..((((.....))))....))))..))
[ predicted structure ] .........(((((.....)))))...........
2M5U_A [ FASTA input ] GGCAGAUUCUGGUGAAUCUGCC
[ reference std structure ] (((((((((....)))))))))
[ reference ext structure ] (((((((((....)))))))))
         (   )        
[ predicted structure ] (((((((((....)))))))))
2M8K_A [ FASTA input ] GGUUUCUUUUUAGUGAUUUUUCCAAACCCCUUUGUGCAAAAAUCAUUA
[ reference std structure ] (((((......[[[[[[[[[[[[))))).....].].]]]]]]]]]].
[ reference ext structure ] ((((([{<abcddddd......d))))).....D.].}>ABCDDDDD.
                  (                    )        
                (                        )      
                     (             )            
                   (                  )         
                 (                      )       
                    (                )          
[ predicted structure ] ..........(((((((((((.((((....))))...)))))))))))
2MF0_G [ FASTA input ] UGUCGACGGAUAGACACAGCCAUCAAGGACGAUGGUCAGGACAUCGCAGGAAGCGAUUCAUCAGGACGAUGA
[ reference std structure ] ((((........))))..((((((......)))))).......((((.....))))..(((.......))).
[ reference ext structure ] ((((........))))..((((((......)))))).......((((.....))))..((((.....)))).
[ predicted structure ] ((((........)))).............(((((.......)))))...........(((((.....)))))
2MFC_D [ FASTA input ] GGGUGUCGACGGAUAGACACCC
[ reference std structure ] (((((((........)))))))
[ reference ext structure ] (((((((...()...)))))))
[ predicted structure ] (((((((........)))))))
2MFE_D [ FASTA input ] GGGCCAUCAAGGACGAUGGUCC
[ reference std structure ] ((((((((......))))))))
[ reference ext structure ] ((((((((......))))))))
[ predicted structure ] ((((((((......))))))))
2MFF_B [ FASTA input ] GGGAUCGCAGGAAGCGAUCCC
[ reference std structure ] ((((((((.....))))))))
[ reference ext structure ] ((((((((.....))))))))
[ predicted structure ] ((((((((.....))))))))
2MFG_B [ FASTA input ] GGGUCAUCAGGACGAUGACCC
[ reference std structure ] ((((((((.....))))))))
[ reference ext structure ] ((((((((.....))))))))
[ predicted structure ] ((((((((.....))))))))
2MHI_A [ FASTA input ] GGAAACGCCGCGGUCAGCUCGGCUGCUGCGAAGAGUUCGUCUCUGUUGUUUCC
[ reference std structure ] ((((((((...((.((((...))))))..(...((.....)).)).)))))))
[ reference ext structure ] ((((((((..(((.((((...))))))).(..(((.....))))).)))))))
[ predicted structure ] ....(((.(((((.((((...))))))))).......))).............
2MI0_B [ FASTA input ] GCGGCAGUUGACUACUGUCGC
[ reference std structure ] (((((((.......)))))))
[ reference ext structure ] (((((((.......)))))))
[ predicted structure ] ((((((((.....))))))))
2MI0_A [ FASTA input ] GAGCAGCAUCGUCGGCUGCUCA
[ reference std structure ] ((((((.........)))))).
[ reference ext structure ] ((((((.........)))))).
[ predicted structure ] (((((((.......))))))).
2MIY_A [ FASTA input ] GCUUGGUGCUUAGCUUCUUUCACCAAGCAUAUUACACGCGGAUAACCGCCAAAGGAGAA
[ reference std structure ] ((((((((.....[[[[[[.)))))))).........(((......)))..]]]]]]..
[ reference ext structure ] ((((((((.[{..<<<<...)))))))).........(((......)))..]}>>>>..
                 (                                  )      
                  (                                )       
[ predicted structure ] ((((((((............)))))))).........((((....))))..........
2MQT_A [ FASTA input ] GGGCGAGGGUCUCCUCUGAGUGAUUGACUACCCGUCAGCGGGGGUCUUUCAUUUGGGGGCUCGUGCCC
[ reference std structure ] (((((.((((((((.....((((..((((.((((....))))))))..))))..)))))))).)))))
[ reference ext structure ] (((((.((((((((.....((((((((((.(((((..)))))))))))))))..)))))))).)))))
                             (            )                         
[ predicted structure ] ....(((((...((((((......((((.....)))).)))))).)))))......((((....))))
2MS1_B [ FASTA input ] GGCUCGUUGGUCUAGGGGUAUGAUUCUCGCUUAGGGUGCGAGAGGUCCCGGGUUCAAAUCCCGGACGAGCC
[ reference std structure ] (((((....((...........))((((((.......)))))).....((((.......))))...)))))
[ reference ext structure ] (((((....((((.[.....))))((((((.......))))))...]((((((...)..)))))..)))))
                    (                       )                          
[ predicted structure ] (((((((.................((((((.......))))))....(((((.......))))))))))))
2MXL_A [ FASTA input ] GGAUUUGCAGGCCUACCAGAAACGGAUGGGAGUGCAGAU
[ reference std structure ] ..(((((((..((((((......)).))))..)))))))
[ reference ext structure ] ..(((((((.(((((((.(..).)).))))).)))))))
                        ()             
               (         )             
[ predicted structure ] ..(((((((..((((...........))))..)))))))
2N2O_A [ FASTA input ] GCAUGUUUUCUGUGAAAACGGUU
[ reference std structure ] ....((((((...))))))....
[ reference ext structure ] ....((((((...))))))....
[ predicted structure ] .........((((....))))..
2N2P_A [ FASTA input ] GCAUGUUUAGUGUCUAAACGGUU
[ reference std structure ] ....((((((...))))))....
[ reference ext structure ] ....((((((...))))))....
[ predicted structure ] ....((((((...))))))....
2N4L_A [ FASTA input ] GGAAUAUUUUUGCUGUACUUUCUAUAGUGAAUAGAGUUAGGCAGGGAUAUUCC
[ reference std structure ] (((((((((((((((.(((..((((.....)))))))).))))))))))))))
[ reference ext structure ] (((((((((((((((.(((..((((.....)))))))).))))))))))))))
              (                       )              
[ predicted structure ] (((((((((((((...(((((...........)))))...)))))))))))))
2N6Q_A [ FASTA input ] AACCUUCACCAAUUAGGUUCAAAUAAGUGGU
[ reference std structure ] ((((..[{{{{.{{{))))....}}}]}}}}
[ reference ext structure ] ((((.[{<<<<..<<))))....>>]}>>>>
   (                  )        
            (            )     
  (                  )         
           (              )    
[ predicted structure ] (((((.........)))))............
2N7M_X [ FASTA input ] GGCCUUAUGCACGGGAAAUACGCAUAUCAGUGAGGAUUCGUCCGAGAUUGUGUUUUUGCUGGUGUAAAUCAGCAGUUCCCCUGCAUAAGGCU
[ reference std structure ] (((((((((((.((((...(.(((...(.................)..))).)...((((((......))))))..)))).)))))))))))
[ reference ext structure ] (((((((((((.(((((..(((((.(.(.....(((....)))..).))))))...(((((((....))))))).))))).)))))))))))
[ predicted structure ] .((((((((((.(((((......(((((((((((((................)))))))))))))..........))))).)))))))))).
2N8V_X [ FASTA input ] GGAACAGCUGUACUGGGCAGUUACAGCAGUCGUAUGGUAACACAUGCGGCGUUCCGAAAUACCAUGCCUG
[ reference std structure ] .((((..((((((.[[[.[).)))))...(((((((......))))))).))))..........].]]].
[ reference ext structure ] (((((.(((((((.[[[[[).)))))).((((((((......))))))))))))).........]]]]].
            (       )                                                 
[ predicted structure ] (((((.((((((.......(((((............)))))...)))))))))))...............
2RP0_A [ FASTA input ] UCCGGUCGACUCCGGAGAAACAAAGUC
[ reference std structure ] (((((..[.[.)))))........].]
[ reference ext structure ] ((([{<a(....])))......}>A.)
            (        )     
    (      )               
         (              )  
           (           )   
[ predicted structure ] (((((......)))))...........
2RPT_A [ FASTA input ] GGCCCGCCGAAAGGCCGGCC
[ reference std structure ] ((((.(((....))).))))
[ reference ext structure ] ((((.(((....))).))))
[ predicted structure ] .....((((......)))).
2RRC_A [ FASTA input ] GGACCCACCACGGCGAGGUCCA
[ reference std structure ] ((((((.(....).).))))).
[ reference ext structure ] (((((((((..)))).))))).
              ()      
[ predicted structure ] (((((...........))))).
2WRQ_Y [ FASTA input ] GCUGAUAUAGCUCAGUUGGUAGAGCGCACCCUUGGUGAGGGUGAGGUCGGCAGUUCGAAUCUGCCUAUCAGCACCA
[ reference std structure ] .((...(..(..............)..((((.......)))).......(.............).)...)).....
[ reference ext structure ] .((.(.({<(...}....(..(>.)..((((.......))))...)...[...[.).].....].)..))).....
           (          )                                                     
       (            )                                                       
[ predicted structure ] (((((((..((((........)))).((((((.....)))))).....(((((.......))))))))))))....
2WW9_D [ FASTA input ] AGAACGCAGCGAAAUGCGAUACGUAAUGUGAAUUGCAGAAUUCCGUGAAUCAUCGAAUCUUUG
[ reference std structure ] .((((............).....(.((....(((....)))..........))..)...))).
[ reference ext structure ] (((({([<(.(.)..].}..)>((((((...(((..).))).......)..)).)).).))))
                  (                                        )   
                               (              )                
     (          )                                              
             (       )                                         
          ()                                                   
                      (                                 )      
                 ()                                            
[ predicted structure ] ....((((......)))).............................................
2WW9_F [ FASTA input ] CCACGUCAACAGCAGUUGGACGUGG
[ reference std structure ] ((((((...((.....)).))))))
[ reference ext structure ] (((((((...(.....)).))))))
        (          )     
         (       )       
[ predicted structure ] (((((((...........)))))))
2WW9_E [ FASTA input ] UGAAAAGAACUUUGAAAAGAGAGUGAAAAAGUAC
[ reference std structure ] ......(..((((....))))............)
[ reference ext structure ] [(..])(.((((((..))))))({(..}.))..)
    (                      )      
     (                       )    
[ predicted structure ] ........(((((......)))))..........
2WWQ_V [ FASTA input ] CGGCACGUAGCGCAGCCUGGUAGCGCACCGUCAUGGGGUGUCGGGGGUCGGAGGUUCAAAUCCUCUCGUGCCGACCA
[ reference std structure ] (((((((..((((.........)))).(((.(.......).))).....((.((.......)).)))))))))....
[ reference ext structure ] ((((((((.[[[[)(.......]]].((((.((....).).))))]..)((.(((...)..)).)))))))))....
                               (        )                                    
             (       )                                                       
                      (                       )                              
         (               )                                                   
[ predicted structure ] (((((((..((((.........))))(((................)))..((((.......)))).)))))))....
2XKV_B [ FASTA input ] CUCUGUUGGUUCUCUGUGCUCUGUGCUCUGUUUACCAGGUCAGGUCCGAAAGGAAGCAGCCAAGGCAGAGACGCAGAGCAGGCAGAUGUAGCUGGC
[ reference std structure ] .........(....(....((.......(((......((.....((......)).....))...)))........).)......)....)......
[ reference ext structure ] .........(...(((...(((.....((((......((....(((.(.)..)).)...))...))).).....)).).....)))...)......
                                           (          )                                         
                           (                                       )                            
                                             (       )                                          
[ predicted structure ] .((((......((((((((((((....((((((....................))))))......))))).)))))))....))))..........
2XQD_Y [ FASTA input ] AGGGGCGUAGUUCAAUUGGUAGAACACCGGUCUCCAAAACCGGGUGUUGGGAGUUCGAGUCUCUCCGCCCCUGCCA
[ reference std structure ] ((.((((..((((........))))((((((.......))))).)...(((((.......))))))))).))....
[ reference ext structure ] ((((((((({{.[)(......])}.(((((((.....))))))})..)(((((.......))))))))))))....
           (          )                                                     
         (              )                                                   
[ predicted structure ] (((((((..((((........)))).(((((.......))))).....(((((.......))))))))))))....
2Y8W_B [ FASTA input ] UCCCCACGCGUGUGGGGAUG
[ reference std structure ] .((((((....))))))...
[ reference ext structure ] .((((((....))))))...
[ predicted structure ] (((((((....)))))))..
2Y9C_V [ FASTA input ] GCCGUGACGACUGAAAAGUCGGCAUUGGCAAUUUUUGACAGUCUCUAUGGGUAACCUAAGGAGACUGG
[ reference std structure ] ((..((.(((((....))))).))..).)..........(((((((..((....))...)))))))..
[ reference ext structure ] (((.(((((((((..))))))))).)).)..........((((((((.(((..))))..)))))))..
                                              (           )         
[ predicted structure ] (((....(((((....))))).....))).........(((((((..((((...))))..))))))).
2YIE_Z [ FASTA input ] GAUUGAUUUGGUGAAAUUCCAAAACCGACAGUAGAGUCUGGAUGAGAGAAGAUUCG
[ reference std structure ] ......(((((.......))))).....(((......)))................
[ reference ext structure ] ....(.((((((...)..)))))..).(((((..)..))))...............
[ predicted structure ] ......(((((.......)))))..........((((((..........)))))).
2YIE_X [ FASTA input ] GAUCUUCGGGGCAGGGUGAAAUUCCCGACCGGUGGUAUAGUCCACGAAUCCAU
[ reference std structure ] .............(((.......))).....((((......))))........
[ reference ext structure ] .........(.(.((((...)..))))..).(((((..)..))))........
            (             )                          
[ predicted structure ] .....(((((.............)))))...((((......))))........
2ZY6_A [ FASTA input ] GCCCGGAUAGUGUCCUUGGGAAACCGAGUCCGGGCACC
[ reference std structure ] (((((((..(.(...........))...)))))))...
[ reference ext structure ] ((((((((((.(......).....))).)))))))...
           (           )              
[ predicted structure ] (((((((.......(((((....))))))))))))...
2ZZM_B [ FASTA input ] GCAGGGGUCGCCAAGCCUGGCCAAAGGCGCUGGGCCUAGGACCCAGUCCCGUAGGGGUUCCAGGGUUCAAAUCCCUGCCCCUGC
[ reference std structure ] ......(..(((.............)))((((((.......))))))(((....)))......((.......))...)......
[ reference ext structure ] .(.(((((.[[[[){...<(.}a(]]]](((((((.....)))))))((((..))))A)...((((>).)..)))..))).).)
              (                                            )                        
             (         )                                                            
[ predicted structure ] ((((((((((((.............)))).((((((..((((((..........))))))...)))))).))))))))......
2ZZN_D [ FASTA input ] GCCGGGGUAGUCUAGGGGCUAGGCAGCGGACUGCAGAUCCGCCUUACGUGGGUUCAAAUCCCACCCCCGGC
[ reference std structure ] (((((((..((([....(..]))).(((((.......))))).....(((((..)....))))))))))))
[ reference ext structure ] ((((((((.[[[[)<.{(..]]]].((((((.....))))))....>((((((}).)..))))))))))))
[ predicted structure ] (((((((..((((((...)))))).(((((.......))))).....(((((.......))))))))))))
3A2K_C [ FASTA input ] GGACCUUUAGCUCAGUUGGUUAGAGCAGACGGCUCAUAACCGUCCGGCCGUAGGUUCGAGUCCUACAAGGUCCACCA
[ reference std structure ] (((((((..((([.....(...]))).(((((.......))))).....(((((..)....))))))))))))....
[ reference ext structure ] ((((((((.{{{)a...[(..A(}}}.(((((.......)))))..).(<<<<<(]).)).>>>>>)))))))....
            (         )                                                      
[ predicted structure ] (((((((..((((.........)))).(((((.......))))).....(((((.......))))))))))))....
3A3A_A [ FASTA input ] GCCCGGAUGAUCCUCAGUGGUCUGGGGUGCAGGCUUCAAACCUGUAGCUGUCUAGCGACAGAGUGGUUCAAUUCCACCUUUCGGGC
[ reference std structure ] (((((((.(..((((([..(.])))))((((((.......)))))).(((((....))))).((((..)....))))).)))))))
[ reference ext structure ] (((((((((..(((((({[{.))))))(((((((..)...))))))((((((....))))))(((((]}.)}.)))))))))))))
                   ()                                                                 
[ predicted structure ] .((((((.............)))))).((((((.......)))))).(((((....))))).((((.......)))).........
3ADB_C [ FASTA input ] GGCCGCCGCCACCGGGGUGGUCCCCGGGCCGGACUUCAGAUCCGGCGCGCCCCGAGUGGGGCGCGGGGUUCAAUUCCCCGCGGCGGCCGCCA
[ reference std structure ] (((((((((..((((([..(.])))))((((((.......))))))(((((((....)))))))((((..)....)))))))))))))....
[ reference ext structure ] (((((((((..(((((([[()))))))(((((((.....)))))))(((((((....)))))))(((((]..)].)))))))))))))....
                   (                                                  )                     
[ predicted structure ] (((((((((....(((((...(((((.((((((.......)))))).(((.....))).....)))))....)))))..)))))))))....
3AKZ_H [ FASTA input ] UGGGAGGUCGUCUAACGGUAGGACGGCGGACUCUGGAUCCGCUGGUGGAGGUUCGAGUCCUCCCCUCCCAGCCA
[ reference std structure ] .((((((..((((.......)))).(((((.......)))))....(((((.......))))))))))).....
[ reference ext structure ] ((((((((.[[[[)(.....]]]].((((((.....))))))...)((((((...)..))))))))))))....
             (     )                                                      
       (                                    )                             
                    (                       )                             
[ predicted structure ] (((((((.(((...)))...((((((((((.......)))))))..(((........)))))))))))))....
3AM1_B [ FASTA input ] GGCGCGGGGUACCGGGCUUGGUAGCCCGGGGCUUCGGCCGAGGGCGAGAGCCCUCGGGGUUCGAUUCCCCCCCUGCGCCGC
[ reference std structure ] (((((((((..(((((((....)))))))(((....)))((((((....))))))((((.......)))))))))))))..
[ reference ext structure ] (((((((((..((((((([[())))))))(((....)))(((((((..)))))))(((((]..)].)))))))))))))..
                    (                                        )                   
[ predicted structure ] (((((((((((((......))))....((((..(((.((((((((....))))))))....)))..)))))))))))))..
3AMU_B [ FASTA input ] GGGCCCGUAGCUUAGCCAGGUCAGAGCGCCCGGCUCAUAACCGGGCGGUCGAGGGUUCGAAUCCCUCCGGGCCCACCA
[ reference std structure ] (((((.(..((((..........)))).((((.........)))).....(((((.......)))))).)))))....
[ reference ext structure ] ((((((((({{.[)<....(...])}}.((((.........))))....>((((((.).)..))))))))))))....
           (            )                                                     
                       (                       )                              
             (        )                                                       
[ predicted structure ] .(((..........))).(((.....(((((((.......))))))).....(((((((........)))))))))).
3DW4_A [ FASTA input ] UGCUCCUAGUACGAGAGGACCGGAGUG
[ reference std structure ] .(((((.....(....)....))))).
[ reference ext structure ] .(((((..()(((..)))...))))).
         (        )        
[ predicted structure ] ...((((........))))........
3GCA_A [ FASTA input ] CUGGGUCGCAGUAACCCCAGUUAACAAAACAAG
[ reference std structure ] (((((...[.[....))))).........]..]
[ reference ext structure ] ((((<((({{)....>)))).......)..)}}
          (                  )   
                   ()            
               (           )     
    (                     )      
                (        )       
            (                 )  
          (  )                   
[ predicted structure ] (((((..........))))).............
3GX2_A [ FASTA input ] GGCUUAUCAAGAGAGGUGGAGGGACUGGCCCGACGAAACCCGGCAACCAGAAAUGGUGCCAAUUCCUGCAGCGGAAACGUUGAAAGAUGAGCCG
[ reference std structure ] ((((((((......(((...(((...[[)))......))).(((..(((....))).)))...(]]..(((((....)))))..))))))))).
[ reference ext structure ] ((((((((..({(.((((.((((.<<<<.))...).)))))(})..((((..))))...).).(>>>>((((((..))))))..))))))))).
                                           (             )                                    
                      (     )                                                                 
                                          (               )                                   
                             (                              )                                 
              (                         )                                                     
[ predicted structure ] ((((((((...........(((((((((...........))))..((((....)))).....))))).(((((....)))))...)))))))).
3HAY_E [ FASTA input ] GGCUGCCUGGGUCCGCCUUGAGUGCCCGGGUGAGAAGCAUGAUCCCGGGUAAUUAUGGCGGACCCACA
[ reference std structure ] ........(((((((.(.......((((((.............)))))).......).)))))))...
[ reference ext structure ] ........(((((((((.......(((((((((.......))))))))).......)))))))))...
[ predicted structure ] .......((((((((((.(((.((((((((.............)))))))).))).))))))))))..
3HJW_D [ FASTA input ] GGGCCACGGAAACCGCGCGCGGUGAUCAAUGAGCCGCGUUCGCUCCCGUGGCCCACAA
[ reference std structure ] (((((((((.......(((((((.........)))))))......)))))))))....
[ reference ext structure ] (((((((((.......(((((((((.....)))))))))......)))))))))....
[ predicted structure ] (((((((((.....((((((((...........)))))..)))..)))))))))....
3IAB_R [ FASTA input ] GGACUCAGUAAUAUGCUUUGGAAACGAAGCUUACAAAAUGGAGUCC
[ reference std structure ] ((((((........((((((....))))))..........))))))
[ reference ext structure ] ((((((...(..).(((((((..)))))))..........))))))
[ predicted structure ] ((((((.((((...((((((....))))))))))......))))))
3ID5_D [ FASTA input ] GGGGCGCCCUCUGAGCGUUCGCGCUGUGAUGA
[ reference std structure ] ..........(...(((....)))......).
[ reference ext structure ] ..........(((((((....)))...)))).
          (                    )
              (         )       
[ predicted structure ] .((((((.......))))))............
3IVN_B [ FASTA input ] GGCCAGUAUAACCUCAAUGAUAUGGUUUGAGGGUGUCUACCAGGAACCGUAAAAUCCUGACUACUGGUC
[ reference std structure ] (((((((({..((((((......[[.))))))(.....})(((((.]]......)))))..))))))))
[ reference ext structure ] (((((((([(.(((((((.{{..{{)))))))).(...].(((((.}}().}}.))))).)))))))))
                                    (                        )       
                                (      )                             
                                  (  )                               
[ predicted structure ] ((((((((...((((((.........))))))........(((((.........)))))..))))))))
3IWN_A [ FASTA input ] CACGCACAGGGCAAACCAUUCGAAAGAGUGGGACGCAAAGCCUCCGGCCUAAACGGCAUUGCACUCCGCCGUAGGUAGCGGGGUUACCGAUGG
[ reference std structure ] ((((......([...((((((....))))))..(])...(((.((((((((..((((..........))))))))).)))))))...)).)).
[ reference ext structure ] ((((......({...(((((((..)))))))..(}).(.(((.([[(((((..((((..........)))))))))))]].))))..)).)).
                        (                                                )                   
                                  (   )                                                      
                                           (                                    )            
[ predicted structure ] .............((((....................................(((.........)))(((.......)))))))........
3J0L_8 [ FASTA input ] GACCGUCGUGAGACAGGUUA
[ reference std structure ] (((((((....))).)))).
[ reference ext structure ] ((((((((..)))).)))).
[ predicted structure ] .((((((....))).)))..
3J0L_7 [ FASTA input ] GCUUGUGGCAGUCAAGCGUUCAUAGCGACAUUGCUUUUUGAUUCUUCGAU
[ reference std structure ] (.(.(.((((.(...((.......))...).))))...)).)........
[ reference ext structure ] (((.((((((.(.(((((.....)))))..)))))..)))))........
                     (    )                       
           (                 )                    
[ predicted structure ] (((((.......))))).................................
3J0L_1 [ FASTA input ] GAAUGAUUAGAGGUUCCGGGGUCGAAAUGACCUUGACCUAUUCUCAAACU
[ reference std structure ] ....((..(.(((.(.(.(.(((.....))).).))))).)..)).....
[ reference ext structure ] .((((((((.(((.(.(.(((((.....))))).))))).))))))..))
         (                              )         
[ predicted structure ] ..........((((..(((((((.....)))))))))))...........
3J0L_g [ FASTA input ] GAACCUGCGGCUUAAUUUGACUCAACACGGG
[ reference std structure ] .................((........))..
[ reference ext structure ] ......(.........[[[......).]].]
[ predicted structure ] ....................(((.....)))
3J0L_a [ FASTA input ] GGAGGGCAAGUCAUGGUGCCAGCAGCCGCGGUAAUUCCAGCUCCAAUA
[ reference std structure ] .((((....[.[.[[[.....[[..))]].......]]]]])).....
[ reference ext structure ] (([[[.())(.(.((((...(((..]])))...)..)))))].)....
 (                                        )     
[ predicted structure ] ....((((........))))............................
3J16_L [ FASTA input ] UCCGUGAUAGUUUAAUGGUCAGAAUGGGCGCUUGUCGCGUGCCAGAUCGGGGUUCAAUUCCCCGUCGCGGAGCCA
[ reference std structure ] (((((((..((((........)))).(((((.......)))))....(((((.......))))))))))))....
[ reference ext structure ] (((((((((<<.[)({.{...])>>((((((.(..)..))))))..)((((((}..)}.))))))))))))....
           (          )                                                    
                     (                      )                              
[ predicted structure ] .((((.........))))........(((......((((........(((((.......))))).))))..))).
3J20_0 [ FASTA input ] GCCGCCGUAGCUUAGCUGGUGGAGCGCCGGACUGUUAAUCCGGCGGUCCCCGGUUCGAAUCCGGGCGGCGGCGCCA
[ reference std structure ] (((((((..((([.....(..]))).(((((.......))))).....((.((..)....)).)))))))))....
[ reference ext structure ] ((((((((.{{{{)<..[(..}}}}.((((((.....))))))....>((((((]).)..))))))))))))....
         (                                  )                               
       (            )                                                       
                     (                       )                              
[ predicted structure ] (((((((.................(((((((.......)))))))...(((((.......))))))))))))....
3J3D_C [ FASTA input ] AGCAGAGUGGCGCAGCGGAAGCGUGCUGGGCCCAUAACCCAGAGGUCGAUGGAUCGAAACCAUCCUCUGCUACCA
[ reference std structure ] (((((((..(([.....(...])).(((((.......))))).......(((..)....)))..)))))))....
[ reference ext structure ] ((((((((({{..)(<a<..()}}((((((.......)))))).).)(((((A.>..>.))))))))))))....
           (         )                                                     
[ predicted structure ] (((((((.(((..............(((((.......)))))..)))(((((.......))))))))))))....
3J45_4 [ FASTA input ] CGGUGCCGGAAGGUUAAUUGAUGGGGUUAGCGCAAGCGAAGCUCUUGAUCGAAGCCCCGGU
[ reference std structure ] ....(((((..(((........(((((..((....))...)))))........))))))))
              (                                      )       
[ reference ext structure ] ....(((((..(((...(((((((((((((((..))))).))))))))))...))))))))
              (                                      )       
[ predicted structure ] ......................((((((....((((.......)))).....))))))...
3J46_p [ FASTA input ] GCGGGAAUAGCUCAGUUGGUAGAGCACGACCUUGCCAAGGUCGGGGUCGCGAGUUCGAGUCUCGUUUCCCGCUCCA
[ reference std structure ] (((((((...((..........)).....(.........)........((((.........)))))))))))....
[ reference ext structure ] ((((((((.[[[..{.<...)<]]](((.((.......)).))).>.}aaaaaa..>A..AAAAA)))))))....
              (                                           )                 
                         (                  )                               
[ predicted structure ] (((((((..((((........))))((((.(((((.............)))))........)))))))))))....
3J46_1 [ FASTA input ] AAGGACGUGCUAAUCUGCGAUAAGCGUCGGUAAGGUGAUAUGAACCGUUAUAACCGGCGAUUU
[ reference std structure ] ....((((.[..[[[.))).....{{{{{{...{{{]]]..].}}}.......}}}}}}...)
[ reference ext structure ] ....(((([{..{{.{)))...}<<<<<<<<<<<<<]}}..}.>>>>....>>>>>>>>>..)
      (              )                                         
              (                     )                          
                  ()                                           
                                 (                 )           
[ predicted structure ] ........................(((((((..(((.......)))......)))))))....
3J46_2 [ FASTA input ] AAGGGUUCCUGUCCAACGUUAAUCGGGGCAGGGUGA
[ reference std structure ] .......((((((...((.....)).))))))....
[ reference ext structure ] .....(.(((((((...(.....)).)))))).)..
               (          )         
                (       )           
[ predicted structure ] .......(((((((...........)))))))....
3J5B_1 [ FASTA input ] GGGUGAUUAGCUCAGCUGGGAGAGCACCUCCCUUACAAGGAGGGGGUCGGCGGUUCGAUCCCGUCAUCACCCACCA
[ reference std structure ] (((((.(..((((........))))...(((.......))).......(((((.......)))))).)))))....
[ reference ext structure ] (((((((([{{.{)<..ab..}]}}((((((.......))))))...>ccccccAB.C..CCCCC)))))))....
           (          )                                                     
                     (                       )                              
[ predicted structure ] (((((((..((((........))))((((((..........)))))).(((((.......))))))))))))....
3J5N_W [ FASTA input ] GGCUACGUAGCUCAGUUGGUUAGAGCACAUCACUCAUAAUGAUGGGGUCACAGGUUCGAAUCCCGUCGUAGCCACCA
[ reference std structure ] (((((((..(((...........))).(((((.......)))))......(.((.......)).).)))))))....
[ reference ext structure ] (((((((([{{..)<..ab...b]}}((((((.......)))))).B.>cc.cccAB.C..CC.CC)))))))....
                                                  (              )           
           (           )                                                     
[ predicted structure ] .........((((.........))))............((((((((((...........))))))))))........
3J7A_7 [ FASTA input ] GGGUAAUUGGCGCAGUUGGUUAGCGCGCGGGUCUCAUAAUCCCGAGGUCGUGAGUUCGAUCCUCACAUUACCCA
[ reference std structure ] .((......((...........))..(............)......(..(.........)..)....)).....
[ reference ext structure ] (((.((.([{{..)..<...<]}}..(.(........).)...>..aa.aa>......AA.AA.))).))....
  (                                                                )      
           (         )                                                    
   (                                                              )       
[ predicted structure ] (((((((..((((.........))))...((((((........))))))(((((.......)))))))))))).
3JB9_N [ FASTA input ] GAUCUUCGGAUCACUUUGGUCAAAUUGAAACGAUACAGAGAAGAUUAGCAUGGCCCCUGCACAAGGAUGACACUGCGACAUUGAGAGAAA
[ reference std structure ] .(........)........................................(..((((.....)))..).)...................
[ reference ext structure ] ((((....))))...........................((.....))(.[[[.[(((.....))).)]]]]..................
[ predicted structure ] .......................................................(((.....)))........................
3JYV_7 [ FASTA input ] GCGGAUUUAGCUCAGUUGGGAGAGCGCCAGACUGAAGAUCUGGAGGUCCUGUGUUCGAUCCACAGAAUUCGCACCA
[ reference std structure ] .((((((..((([.....(..]))).((((.........)))).....(((((..)....))))))))))).....
[ reference ext structure ] (((((((((aa.{)(<.[<..})A.(((((((.....)))))))A..)((((((]>.)>.))))))))))))....
           (          )                                                     
         (              )                                                   
                     (                       )                              
[ predicted structure ] ..((((((...((((((((.......))).)))))........)))))).(((..(((..........))))))..
3KTW_C [ FASTA input ] AGAUAGUCGUGGGUUCCCUUUCUGGAGGGAGAGGGAAUUCCACGUUGACCGGGGGAACCGGCCAGGCCCGGAAGGGAGCAACCGUGCCCGGCUAUC
[ reference std structure ] .(((....((..((((.((((((....)))))).))))...))......((((.....(((.....(((....))).....)))..))))...)))
[ reference ext structure ] .((..((.(((<((((.((((([..{(]))))).))))(>))).)....(((((.(...((.(..(((....})))).)..))))))))))..).)
                                                                     (  )                       
                                                          (                        )            
                                                               (              )                 
                                                              (                )                
  (                                                                                           ) 
                                                                    (    )                      
                                                (                                         )     
   (                                                                                         )  
                                                      (                            )            
                          (                                             )                       
[ predicted structure ] .((((((((...((((((((((((((............))))......((((.....))))........)))))))))).........))))))))
3LA5_A [ FASTA input ] GGCUUCAUAUAAUCCGAAUGAUAUGGUUUCGGAGCUUCCACCAAGAGCCUUAAACUCUUGACUAUGGAGUC
[ reference std structure ] ((((((((([..((((((......{{.))))))(.....])((((((}}.....))))))..)))))))))
[ reference ext structure ] (((((((((((.(((((((.[[[.[[)))))))).....).((((((]]..]]]))))))..)))))))))
                                                (   )                  
                         (                           )                 
                                     (                        )        
                                 (      )                              
                                    (                          )       
[ predicted structure ] (((((((((...((((((.........))))))........((((((.......))))))..)))))))))
3NKB_B [ FASTA input ] GGUCCGCAGCCUCCUCGCGGCGCAAGCUGGGCAACAUUCCGAAAGGUAAUGGCGAAUGCGGACC
[ reference std structure ] (((((((((((.[[....))).......]]....((((((....)).)))).....))))))))
[ reference ext structure ] (((((((((((({{..).))).......}..[}(.((((((..))).)))])....))))))))
            (                )                                  
                              ( )                               
                                  (               )             
                   (                                   )        
[ predicted structure ] (((((((((((.(((..(((..................)))..)))....)))...))))))))
3NMU_E [ FASTA input ] GCCGUUGAAGCUCUGACCGAAAGGCGUGAUGAGC
[ reference std structure ] ............(...((....))......)...
[ reference ext structure ] ............((((((....))...))))...
[ predicted structure ] .........((((.................))))
3OVB_D [ FASTA input ] GGAAGUAGAUGGUUCAAGUCCAUUUACUUCCACCA
[ reference std structure ] ((((.(((((((.......))))))).))))....
[ reference ext structure ] ((((.(((((((.......))))))).))))....
[ predicted structure ] ((((((((((((.......))))))))))))....
3OVS_D [ FASTA input ] GGAAGUAGAUGGUUCAAGUCCAUUUACUUCCACC
[ reference std structure ] ((((((((((((.......))))))))))))...
[ reference ext structure ] (((((((((((((...)..))))))))))))...
[ predicted structure ] ((((((((((((.......))))))))))))...
3P22_G [ FASTA input ] GCUGGGUUUUUCCUUCGAAAGAAGGUUUUUAUCCCAGUC
[ reference std structure ] ((((((.....(((((....))))).......)))))).
[ reference ext structure ] ((((((.....((((((..)))))).......)))))).
[ predicted structure ] .(((((.....(((((....))))).......)))))..
3R4F_A [ FASTA input ] GGCGUGUAUGUGGGGAAACCCUGAUUGAGUUCAGCCCACAUACUUUGUUGAUGGUUGUCAAUCGCC
[ reference std structure ] ((((.((((((((.......((((......)))).))))))))...((((((....))))))))))
[ reference ext structure ] ((((((((((((((......(((((....)))))))))))))))..((((((....))))))))))
[ predicted structure ] ((((.(((((((((..(((.........)))...)))))))))....((((......)))).))))
3R9X_C [ FASTA input ] CAACCGUAGGGGAACCUGCGGUUGGAUCACCUCCU
[ reference std structure ] (((((((.(......).)))))))...........
[ reference ext structure ] (((((((.(.(...)).)))))))...........
          ( )                      
[ predicted structure ] ((((((((((....))))))))))...........
3RKF_A [ FASTA input ] GGCCAUAUAACUGCGUGGAUAUAGCACGCAGGUUUCUACCGGGCACUGUAAAUGUCCGACUAUGGUC
[ reference std structure ] ((((((([..(((((((.....{{)))))))(.....])((((((}}.....))))))..)))))))
[ reference ext structure ] (((((((((.(((((((.[[[.[[)))))))).....).((((((]]()]]]))))))..)))))))
                                   (                        )      
                                              (    )               
                               (      )                            
                                  (                          )     
                                              (   )                
                       (                           )               
[ predicted structure ] (((((((...(((((((.......)))))))........((((((.......))))))..)))))))
3SD1_A [ FASTA input ] GGAGAGUAGAUGAUUCGCGUUAAGUGUGUGUGAAUGGGAUGUCGUCACACAACGAAGCGAGAGCGCGGUGAAUCAUUGCAUCCGCUCCA
[ reference std structure ] ((((....((((((((((((......(((((((...[[[[....))))))).....((....))))).)))))))))..]]]].)))).
[ reference ext structure ] ((((((.({{{{{{{{{{{{..{{.{{{{{{{{.[.)((((].)}}}}}}}}.}}.(((..)))}}}.}}}}}}}}}.)))).))))).
                                                       (        )                        
                      (                                           )                      
                                 (         )                                             
                  (  )                                                                   
                                    (                                             )      
[ predicted structure ] ...............((((((.....(((((((...........)))))))..........))))))......................
3SIU_F [ FASTA input ] CUGUCCAAUGAGCGCAUAGUGAGGGCAG
[ reference std structure ] ((((((.....((.....))..))))))
[ reference ext structure ] ((((((...(((((..).))))))))))
[ predicted structure ] ((((((................))))))
3SN2_B [ FASTA input ] GAUUAUCGGAAGCAGUGCCUUCCAUAAUC
[ reference std structure ] ((((((.((((((...).)))))))))))
[ reference ext structure ] ((((((.((((((...).)))))))))))
[ predicted structure ] ((((((.(((((......)))))))))))
3TRZ_Z [ FASTA input ] GGGCAGGGAUUUUGCCCGGAG
[ reference std structure ] (((((.......)))))....
[ reference ext structure ] (((((.......)))))(.).
[ predicted structure ] (((((.......)))))....
3TS0_U [ FASTA input ] GGGGUAGUGAUUUUACCCUGGAG
[ reference std structure ] ((((((.......))))))....
[ reference ext structure ] ((((((.......))))))....
[ predicted structure ] .(((((.......))))).....
3TS2_V [ FASTA input ] GGGGUCUAUGAUACCACCCCGGAG
[ reference std structure ] (((((..........)))))....
[ reference ext structure ] (((((..........)))))....
[ predicted structure ] (((((..........)))))....
3W3S_B [ FASTA input ] GGGAGAGGUUGGCCGGCUGGUGCCGCCCCGGGACUUCAAAUCCCGUGGGAGGUCCCGCAAGGGAGCUCCGGAGGGUUCGAUUCCCUCCCUCUCCCGCC
[ reference std structure ] (((.((((..((.((([..(.])))))((((((.......))))).)((((.((((....)))).)))).(((((..)....))))))))).)))...
[ reference ext structure ] (((.((((..((.(((([[()))))))((((((.......))))).)((((((((((..)))))))))).((((((]..)].))))))))).)))...
                   (                                                         )                    
                     (                                               )                            
[ predicted structure ] ..........(((((((....))))...(((((((((...........)))))))))...(((((....((((((.......))))))..))))))))
3WC1_P [ FASTA input ] GCCAUCAUAGUAUAGUGGUCAUUAUAAAUCGUUGUGGCCGAUUAGACCCAAGUUCGAUUCUUGGUGAUGGCAC
[ reference std structure ] .((((((..((............))..(..(.......)..).....(((((.......)))))))))))...
[ reference ext structure ] .((((((.([[.(.({{<..)))]]..((.(..()...).)).....aaaaaa}>.A}.AAAAA))))))...
[ predicted structure ] (((((((...((((((....))))))(((((.......)))))....(((((.......))))))))))))..
3WQY_C [ FASTA input ] GGGCUCGUAGCUCAGCGGGAGAGCGCCGCCUUUGCGAGGCGGAGGCCGCGGGUUCAAAUCCCGCCGAGUCCACCA
[ reference std structure ] (((((((..((((....[..)))).((((((.....)))))).....{{{{{..]....}}}}})))))))....
[ reference ext structure ] (((((((([{{.{)<.ab..}]}}(((((((.....)))))))...>ccccccAB.C..CCCCC)))))))....
                    (                       )                              
           (         )                                                     
[ predicted structure ] (((((((..((((.......)))).((((((.....)))))).....(((((.......))))))))))))....
4A4U_A [ FASTA input ] GGACCCGGCUGACGCUGGGUCC
[ reference std structure ] (((((((((....)))))))))
[ reference ext structure ] (((((((((....)))))))))
[ predicted structure ] (((((((((....)))))))))
4AOB_A [ FASTA input ] GGCUUAUCAAGAGAGGGCAAGAGACUGGCUUGAUGACCCCCGGCAACCAAAAAUGGUGCCAAUUCCUGCAGAGGAAACGUUGAAAGAUGAGCCA
[ reference std structure ] ((((((((....(.(((...(((.[.[[)))......))))(((..(((....))).)))...(]].](((.(....).)))..))))))))).
[ reference ext structure ] ((((((((..({(.((((.((((.<<<..))...).)))))(})..((((..))))...)...()>>>((((((..))))))..))))))))).
                      (                                      )                                
                                           (             )                                    
                             (                              )                                 
                   (           )                                                              
                    (              )                                                          
                           (                                    )                             
                                          (               )                                   
                      (     )                                                                 
[ predicted structure ] ((((((((......(((((((.......))))....)))..((((...........))))..(((((....))))).........)))))))).
4ATO_G [ FASTA input ] AAAUUGGUGUAACCUUACCGUAGUAGGUGCUAA
[ reference std structure ] .....(((...[[[[.))).....]]]].....
[ reference ext structure ] .....(((...[[[[[)))....]]]]].....
      (              )           
                      ()         
[ predicted structure ] ...........((((.........)))).....
4BW0_A [ FASTA input ] GGGGGAGCCGAAAGGCGAAGAACCCA
[ reference std structure ] (((...(((....)))......))).
[ reference ext structure ] ((((((((((..)))))...))))).
     (             )      
[ predicted structure ] ..(((.(((....)))......))).
4BY9_A [ FASTA input ] GCGAGCAAUGAUGAGUGAUGGGCGAACUGAGCUCGAAAGAGCAAUGAUGAGUGAUGGGCGAACUGAGCUCGC
[ reference std structure ] ((((((....................(...((((....))))......).................))))))
[ reference ext structure ] ((((((...((((.............(((((((((..)))))...)))).............))))))))))
                          (                      )                      
[ predicted structure ] .(((((.......(((.........)))..)))))......................((((.......))))
4BYQ_N [ FASTA input ] GUCGCGCCUGCGUAGGAUAGGUGGGAGCCUGUGAACCCCCGCCUCCGGGUGGGGGGGAGGCGCCGGUGAAAUACCACCCUGGCGCGG
[ reference std structure ] .((.((((..(.....[..{{{.{..{{{......{..{.{.{...)}.}.}..}...}}}..........].}.}}}..)))).))
[ reference ext structure ] .(((((((..(..(..[[){{{{{{.{{{...{{.{.{{{{.....)].}}}}.}.}}}}}.....(...)]}}}}}}..)))))))
                                          (    )                                       
                          (                                             )              
                  (                                                )                   
[ predicted structure ] ..((((((...........(((((..........(((..(((((((.........)))))))..)))......)))))..)))))).
4C4W_H [ FASTA input ] GAGCAAGAGCCAUUGCACUCCGGUUUGAUGACCUC
[ reference std structure ] (((...(((((..........)))))......)))
[ reference ext structure ] (((.(((((((..........))))))...).)))
     (                       )     
[ predicted structure ] ..((((......)))).....(((......)))..
4C7O_E [ FASTA input ] UGUUGGUUCUCCCGCAACGCGGAAGCGUGUGCCGGGAUGUAGCUGGCA
[ reference std structure ] (((((((.((((((((((((....)))).))).)))).)..)))))))
[ reference ext structure ] (((((((.(((((((((((((..))))).))).)))).)..)))))))
[ predicted structure ] ((((((((.(((((..(((((....)))))..)))))...))))))))
4CXG_a [ FASTA input ] ACAUCCAAGGAAGGCAGCAGGCGCGCAAAUUACCCACUCCCGACCCGG
[ reference std structure ] .(.((....)).)...........................(.....).
[ reference ext structure ] ((.(((..))).))..........(..)............(.....).
[ predicted structure ] ........(((..........................)))........
4CXG_2 [ FASTA input ] UGGCUUGUGGCGGCCAAGCGUUCAUAGCGACGUCGCUUUUUGAUCCUUCG
[ reference std structure ] .((.(.(.((((((...((.......))...))))))...)).).)....
[ reference ext structure ] .((((.((((((((..(((.......)))..))))))..))))).)....
                                            ()    
                   (      )                       
[ predicted structure ] ..(((((.......)))))..(((.((((....))))...))).......
4CXG_Y [ FASTA input ] GCGGAUUUAGCUCAGUUGGGAGAGCGCCGGUCUCCAAAACCGGAGGUCCUGUGUUCGAUCCACAGAAUUCGCACCA
[ reference std structure ] (((((((..((.(.....[..).)).(((((.......))))).....{{{{{..]....}}}}})))))))....
[ reference ext structure ] (((((((([{{.{)<a.ab..}]}}.((((((.....))))))....>ccccccAB.CA.CCCCC)))))))....
           (          )                                                     
                     (                       )                              
[ predicted structure ] (((((((..((((........))))...(((((((......)))))))(((((.......))))))))))))....
4ENB_A [ FASTA input ] GGCGAUGAGGCCCGCCCAAACUGCCCUGAAAAGGGCUGAUGGCCUCUACUG
[ reference std structure ] ((((..[[[[[[))))......(((((....)))))....]]]]]].....
[ reference ext structure ] {((((.<<<<<<)).}...)..((((((..))))))).(.>>>>>>)....
 (            )                                    
[ predicted structure ] ......((((((.((((...............))))....)))))).....
4ENC_A [ FASTA input ] GGGCGAUGAGGCCCGCCCAAACUGCCCUGAAAAGGGCUGAUGGCCUCUACUG
[ reference std structure ] .((((..[[[[[[))))......(((((....)))))....]]]]]].....
[ reference ext structure ] .{((((.<<<<<<)).}...)..((((((..))))))).(.>>>>>>)....
  (            )                                    
[ predicted structure ] .......((((((.((((...............))))....)))))).....
4HXH_A [ FASTA input ] CCAAAGGCUCUUUUCAGAGCCACCCA
[ reference std structure ] .....((((((....)))))).....
[ reference ext structure ] .....((((((....)))))).....
[ predicted structure ] .....((((((....)))))).....
4JRC_A [ FASTA input ] GAACCCUCUCUUCCGAAGCGAGCCGGGGGCGGUGGGAGCCCGGUGAAGACGGUUCC
[ reference std structure ] (((((...(((((.....(..[[[[[[..........)]]]]]]))))).))))).
[ reference ext structure ] ((((((...((((...[{(.]((((((.........})))))))))))).))))).
                                (   )                   
       (                                          )     
                    (            )                      
        (                                       )       
[ predicted structure ] (((((...(((((.........(((((...........))))).))))).))))).
4K27_U [ FASTA input ] GCCCCUGCCUGCCUGCAGCUAAGGAUGAAAGUCUAUGCUGCCUGCCUGCCUGGGC
[ reference std structure ] ((((..((..((..(((((...((((....))))..)))))..))..))..))))
[ reference ext structure ] ((((..((((((((((((((()(((((..)))))).)))))))))))))..))))
[ predicted structure ] ....((((......)))).........................(((......)))
4KR2_C [ FASTA input ] CGCCGCUGGUGUAGUGGUAUCAUGCAAGAUUCCCAUUCUUGCGACCCGGGUUCGAUUCCCGGGCGGCG
[ reference std structure ] ((((((..(((.....[...)))((((((.......))))))....{{{{..]....}}}}.))))))
[ reference ext structure ] (((((((.[[[[){.<a..]]]](((((((.....)))))))..}bbbbbb>A.B..BBBBB))))))
                   (                       )                        
            (     )                                                 
[ predicted structure ] ...(((((...............((((((.......))))))..((((((.......)))))))))))
4KR3_C [ FASTA input ] CGCCGCUGGUGUAGUGGUAUCAUGCAAGAUUCCCAUUCUUGCGACCCGGGUUCGAUUCCCGGGCGGCGC
[ reference std structure ] ((((((..(((.....[...)))((((((.......))))))...{{{{{..]....}}}}})))))).
                      (                   )                          
[ reference ext structure ] (((((((.[[[[){<<a..]]]](((((((.....)))))))..}bbbbbb>A.B>.BBBBB)))))).
                      (                   )                          
            (     )                                                  
[ predicted structure ] ...(((((...............((((((.......))))))..((((((.......))))))))))).
4KR7_X [ FASTA input ] GCCCGGAUAGUGUCCUUGGGAAACCAAGUCCGGGCACCA
[ reference std structure ] ((((((((.......((((....))))))))))))....
[ reference ext structure ] ((((((((().(..)(((((..)))))))))))))....
[ predicted structure ] (((((((.......(((((....))))))))))))....
4KZE_R [ FASTA input ] GACGCGACCGAAAUGGUGAAGGACGGGUCCAGUGCGAAACACGCACUGUUGAGUAGAGUGUGAGCUCCGUAACUGGUCGCGUC
[ reference std structure ] ((((((((((..((((.(.....(...(((((((((.....)))))))..)).........)..).))))..).)))))))))
[ reference ext structure ] (((((((((((((((((((.([.{)].(((((((((.(..))))))))..))(..{.).}.}.)))))))))).)))))))))
                        (                                  )                       
                     (                              )                              
                    (                                  )                           
                         (                               )                         
[ predicted structure ] (((((((((....................(((((((.....)))))))........(((............))))))))))))
4L81_A [ FASTA input ] GGAUCACGAGGGGGAGACCCCGGCAACCUGGGACGGACACCCAAGGUGCUCACACCGGAGACGGUGGAUCCGGCCCGAGAGGGCAACGAAGUCCGU
[ reference std structure ] (((((....((((....))))(((..((((((.[[[[..))).))).)))..(((((....)))))))))).((((....)))).......]]]].
[ reference ext structure ] (((((..(((((((..)))))[)).()(((((.{{{{..))).))....]..((((((..)))))))))))((((((..))))))......}}}}.
                          (                  )                                                  
                      (                         )                                               
                       (                       )                                                
                              (                                                          )      
                                            (                          )                        
                                         (                                            )         
                                          ()                                                    
[ predicted structure ] ..................(((((....)))))((((((........(((((...(((((.........))))).......))))).....))))))
4M4O_B [ FASTA input ] GGGUUCAUCAGGGCUAAAGAGUGCAGAGUUACUUAGUUCACUGCAGACUUGACGAACCC
[ reference std structure ] ((((((.(((((.((.......((((.(.(.[..)]..).)))))).))))).))))))
[ reference ext structure ] (((((((((((((((..(...)((((.(.(.[..)]..).)))))))))))))))))))
                                ( )                        
                              (       )                    
[ predicted structure ] ((((((.(((((.........(((((..............)))))..))))).))))))
4M6D_L [ FASTA input ] GGCGGCUAAAGAGUGCAGAGUUACUUAGUUCACUGCAGACGCC
[ reference std structure ] .(((..(.......((...(.(.[..)]..)...)))..))).
[ reference ext structure ] .((((.(..(...)((...(.(.[..)]..)...))).)))).
                        ( )                
 (                                        )
                      (       )            
          (  )                             
[ predicted structure ] ((((.........(((((..............)))))..))))
4M6D_D [ FASTA input ] GGCGGCUAAAGAGUGCAGAGUUACUUAGUUCACUGCAGACGC
[ reference std structure ] .(((.((.......((((...(.[..)]....)))))).)))
[ reference ext structure ] .((((((...(..)((((.(.(.[..)]..).))))))))))
                        ( )               
                      (       )           
[ predicted structure ] .............(((((..............))))).....
4M6D_F [ FASTA input ] GCGGCUAAAGAGUGCAGAGUUACUUAGUUCACUGCAGACGC
[ reference std structure ] ..(.((.......((((.(.(.[..)]..).)))))).)..
[ reference ext structure ] .(((((..(...)((((.(.(.[..)]..).)))))))).)
                       ( )               
                     (       )           
[ predicted structure ] ............(((((..............))))).....
4MGN_C [ FASTA input ] GAAUCAAUAGUAGUUAACCCUCUCUUCCGAAGCGAGCCGGGGGCGGUGGGAGCCCGGUGAAGACGGUUAAUGAAACGGCAGUUCC
[ reference std structure ] (((.........(((((((...(((((.....(..[[[[[[..........)]]]]]]))))).)))))))..........))).
[ reference ext structure ] (((.....(.(((((((((...(((((....([([{{{{{{....).]..)]}}}}}}))))).)))))))))).......))).
                                              (   )                                  
[ predicted structure ] .............((((((...(((((.........(((((...........))))).))))).))))))...............
4MGN_D [ FASTA input ] CGGAAGUAGUUCAGUGGUAGAACACCACCUUGCCAAGGUGGGGGUCGCGGGUUCGAGUCCCGUCUUCCGCUC
[ reference std structure ] ((((((..((((....[..)))).(((((.......))))).....{{{{{..]....}}}}}))))))...
[ reference ext structure ] ((((((([{{.{)<.a().}]}}((((((.......))))))...>bbbbbbA..B..BBBBB))))))...
                   (                       )                            
                (                                    )                  
          (         )                                                   
[ predicted structure ] .............(((((.....)))))......((((((((..(((......)))..))))))))......
4MGN_B [ FASTA input ] CGGAAGUAGUUCAGUGGUAGAACACCACCUUGCCAAGGUGGGGGUCGCGGGUUCGAGUCCCGUCUUCCGCU
[ reference std structure ] ((((((..((((....[..)))).(((((.......))))).....{{{{{..]....}}}}}))))))..
[ reference ext structure ] ((((((([{{.{)<.a().}]}}((((((.......))))))...>bbbbbbA..B..BBBBB))))))..
                   (                       )                           
                (                                    )                 
          (         )                                                  
[ predicted structure ] .............(((((.....))))).........(((((((...((((.......)))).))))))).
4OO8_B [ FASTA input ] GGAAAUUAGGUGCGCUUGGCGUUUUAGAGCUAGAAAUAGCAAGUUAAAAUAAGGCUAGUCCGUUAUCAACUUGAAAAAGUGGCACCGAGUCGGUGCU
[ reference std structure ] ....................((((((..((((....))))....))))))..(((..).)).......((((....)))).((((((...)))))).
[ reference ext structure ] ....................((((((..(((((..)))))....)))))).((((..).)))......(((((..))))).((((((.())))))).
[ predicted structure ] .................................................................................((((((...)))))).
4OOG_D [ FASTA input ] CAUGUCAUGUCAUGAGUCCAUGGCAUGGCAUGGC
[ reference std structure ] ((((((((((((((....))))))))))))))..
[ reference ext structure ] ((((((((((((((....))))))))))))))..
[ predicted structure ] ((((((((((((((....))))))))))))))..
4OQU_A [ FASTA input ] GGAUCACGAGGGGGAGACCCCGGCAACCUGGGACGGACACCCAAGGUGCUCACACCGGAGACGGUGGAUCCGGCCCGAGAGGGCAACGAAGGUCCGA
[ reference std structure ] (((((....((((....))))(((..((((((.[[[[[.))).))).)))..(((((....)))))))))).((((....)))).......]]]]].
[ reference ext structure ] (((((..((((((....))))[))..((((((.{{{{{.))).)))...]..(((((....))))))))))((((((..))))))......}}}}}.
                      (                         )                                                
                       (                       )                                                 
                              (                                                          )       
                                            (                          )                         
                                         (                                            )          
                                          ()                                                     
[ predicted structure ] (((((....(((......(((((....))))).......)))..........(((((....)))))))))).((((....)))).............
4P5J_A [ FASTA input ] AGCUCGCCAGUUAGCGAGGUCUGUCUCGACACGACAGAUAAUCGGGUGCAACUCCCGCCCCUCUUCCGAGGGUCAUCGGAACC
[ reference std structure ] .((((((..[...)))))(((((((.......)))))))...{{{{..]....}}}}(((...{{{{{{))).).}}}}}}..
[ reference ext structure ] .(((((([[()..)))))(((((((.......)))))))...{{{{{]..}].}}}}(((..{{{{{{{))).).}}}}}}.}
                                                                       ()          
                                                                      (   )        
         (                                      )                                  
[ predicted structure ] ...............((((((((((.......))))))....((((.......))))..))))((((((......))))))..
4PDB_I [ FASTA input ] GGGAUGCUCAGUGAUCCUUCGGGAUAUCAGGGCAUCCC
[ reference std structure ] (((((((((...(((((....)))..)).)))))))))
[ reference ext structure ] ((((((((((.([)((((..))))...]))))))))))
             (            )           
           (            )             
[ predicted structure ] (((((((((..((((..........)))))))))))))
4PJO_4 [ FASTA input ] GACUUACCUGGCAGUGAGGUGCACACACUGCAUAAUUUGUGGUAGUGG
[ reference std structure ] ..........((((((.........)))))).................
[ reference ext structure ] ..........(((((((.......))))))).................
[ predicted structure ] .....((((.......))))...(((((((((.....)))))).))).
4PJO_2 [ FASTA input ] GACUUACCUGGCAGUGAGGUGCACACACUGCAUAAUUUGUGGUAGUG
[ reference std structure ] ..........((((((.........))))))................
[ reference ext structure ] ..........(((((((.......)))))))................
[ predicted structure ] ....((((..((((((.........)))))).........))))...
4PKD_V [ FASTA input ] GAUCCAUUGCACUCCGGAUCCAGGAGAUACCAUGAUCACGAAGGUGGUUUUCCU
[ reference std structure ] (((((..........))))).((((((..((((..........)))).))))))
[ reference ext structure ] (((((..........))))).(((((((.((((.(()....).)))))))))))
[ predicted structure ] (((((..........))))).((((((.((((............))))))))))
4PLX_A [ FASTA input ] GAAGGUUUUUCUUUUCCUGAGGCGAAAGUCUCAGGUUUUGCUUUUUGGCCUUUCUUAAAAAAAAAAAAAGCAAA
[ reference std structure ] (((((..........((((((((....)))))))).[[[[[[[[[[..)))))...........]]]]]]]]]]
[ reference ext structure ] ((((([{<abcdef.(((((((((..)))))))))....f........)))))...........]}>ABCFDEF
                                         (                          )     
                                          (                        )      
                                      (                                )  
                                     (                                  ) 
                                             (                  )         
    (                                                          )          
                                    (                                    )
                                            (                    )        
                                        (                            )    
                                           (                      )       
[ predicted structure ] ...............((((((((....)))))))).((((((((((....(((.......))).))))))))))
4QJD_B [ FASTA input ] GUAAAUGAUAUAGCCGGUCCCAAGCCCGGAAAAAGGAGGAGGGUAUA
[ reference std structure ] .............((((.[[[....))))...........]]]....
[ reference ext structure ] .............((((([[[[)[.))))....].....]]]]....
[ predicted structure ] .............((((........))))..................
4QJD_F [ FASTA input ] UAAAUGAUAUAGCCGGUCCCAAGCCCGGAAAAAGGAGGAGGGUAUA
[ reference std structure ] ............((((.[[[....))))...........]]]....
[ reference ext structure ] ............((((([[[[)[.))))....].....]]]]....
[ predicted structure ] .......((((.((((........))))..............))))
4QJD_D [ FASTA input ] UAAAUGAUAUAGCCGGUCCCAAGCCCGGAAAAAGGAGGAGGGUAUA
[ reference std structure ] ............((((.[[[....))))...........]]]....
[ reference ext structure ] ............((((([[[[)[.))))....].....]]]]....
[ predicted structure ] ............((((........))))..................
4QJH_D [ FASTA input ] GCAAUAAAGCGGUUACAAGCCCGCAAAAAUAGCAGAGUAAUGUCGCG
[ reference std structure ] ........(((..[[......))).............]]........
[ reference ext structure ] ........(((((()[[)..))))...........]]........()
              (                      )         
             (                        )        
[ predicted structure ] ........((((........)))).......................
4QJH_F [ FASTA input ] GCAAUAAAGCGGUUACAAGCCCGCAAAAAUAGCAGAGUAAUGUCGCG
[ reference std structure ] .........(((.[[[....))).............]]]........
[ reference ext structure ] ........((((([[[[)[.)))).(.)]......]]]]........
                (                   )          
[ predicted structure ] ........((((........)))).......................
4QJH_B [ FASTA input ] GCAAUAAAGCGGUUACAAGCCCGCAAAAAUAGCAGAGUAAUGUCGCG
[ reference std structure ] .........(((..[[....))).............]].........
[ reference ext structure ] .........(((.[[[[)[..)).....]......]]]]........
           (        )                          
                (                   )          
            (    )                             
                                  ()           
[ predicted structure ] ........((((........)))).......................
4RMO_P [ FASTA input ] AAGUUUACCACUGACCGAUAUGUGGUAUAUAAAUGGUCGGGUUG
[ reference std structure ] ......(((((...[[[[[..))))).........]]]]]....
[ reference ext structure ] ......((((((.[[[[[[).))))).........]]]]]]...
                        (   )               
[ predicted structure ] .....((((((..........)))))).................
4TUW_C [ FASTA input ] GGCCAAAGGCCCUUUUCAGGGCCACCC
[ reference std structure ] .......((((((....))))))....
[ reference ext structure ] .......((((((....))))))....
[ predicted structure ] .......((((((....))))))....
4TUX_D [ FASTA input ] GGCCAAAGGCCCUUUUCAGGGCCACC
[ reference std structure ] .......((((((....))))))...
[ reference ext structure ] .......((((((....))))))...
[ predicted structure ] .......((((((....))))))...
4TVX_L [ FASTA input ] AUAAACCGACGGUAUUGUUCAGAUCCUGGCUUGCCAACAGGAGUUCCCCGCGCCAGCGGG
[ reference std structure ] ..............................................(((((....)))))
[ reference ext structure ] ..............................................((((((..))))))
[ predicted structure ] ...(((..........)))....(((((.........)))))....(((((....)))))
4TZY_X [ FASTA input ] GGGAAGAUAUAAUCCUAAUGAUAUGGUUUGGGAGUUUCUACCAAGAGCCUUAAACUCUUGAUUAUCUUCCC
[ reference std structure ] ((((((((((..((((((......[[.))))))[.....)]{{{{{{]].....}}}}}}..)))))))))
[ reference ext structure ] (((((((((((.(((((((.[[..[[)))))))).....).{{{{{{]]...]]}}}}}}..)))))))))
                                                (   )                  
                         (                           )                 
                                     (                        )        
                                 (      )                              
                                    (                          )       
[ predicted structure ] (((((((((...((((((.........))))))........((((((.......))))))..)))))))))
4U7U_X [ FASTA input ] AUAAACCGGGCUCCCUGUCGGUUGUAAUUGAUAAUGUUGAGAGUUCCCCGCGCCAGCGGGG
[ reference std structure ] .............................................((((((....))))))
[ reference ext structure ] .............................................(((((((..)))))))
[ predicted structure ] ...(((((..........)))))......................((((((....))))))
4UN5_A [ FASTA input ] AUAACUCAAUUUGUAAAAAAGUUUUAGAGCUAGAAAUAGCAAGUUAAAAUAAGGCUAGUCCGUUAUCAACUUGAAAAAGUG
[ reference std structure ] ....................((((((..((((....))))....))))))..(((..).)).......((((....)))).
[ reference ext structure ] ....................((((((..((((....))))....)))))).((((..).)))......((((....)))).
[ predicted structure ] .......................................((((((...((((..........)))).))))))........
4W28_6 [ FASTA input ] UGCCCGGUAGCCCCGAAGGUAGAGCAGGGGAUUGAAAAUCCCCGUGUCCUUGGUUCGAUUCCGAGUCCGGGCACCA
[ reference std structure ] .(.((((....(.(.[{....).)..((((.........)))).......<<.(...)]}.>.>..)))).)....
                                                      (  )                  
[ reference ext structure ] .(.((((....(.([{(.{).).).(((((.........)))))...]<.<<<<.}.>}.>>.>.>))))).....
 (                                                                     )    
                                                   (          )             
                                                      (  )                  
                (                                          )                
                                                                      ()    
[ predicted structure ] (((((((...((((............))))..................(((((.......))))).)))))))...
4WJ4_B [ FASTA input ] UCCGCGAUAGCUCAGUCGGUAGAGCAAAUGACUGUUAAUCAUUGGGUCCCUGGUUCGAGUCCAGGUCGCGGAGCCA
[ reference std structure ] (((((((..((((.....[..)))).(((((.......))))).....{{{{{..]....}}}}})))))))....
[ reference ext structure ] (((((((([{{.{)<..ab..}]}}(((((((.....)))))))...>ccccccAB.C..CCCCC)))))))....
           (          )                                                     
                     (                       )                              
[ predicted structure ] (((((((.....(((((............)))))..............(((((.......))))))))))))....
4X0B_B [ FASTA input ] GGGCCAGGUAGCUCAGUUGGUAGAGCACUGGACUGAAAAUCCAGGUGUCGGCGGUUCGAUUCCGCCCCUGGCCCACC
[ reference std structure ] .((((..(..((((........)))).(...............).....(((((.......))))))..))))....
[ reference ext structure ] .(((((.(([{{.{)<...a..}]}}.(...............)....>bbbbbb.A.B..BBBBB).)))))....
                      (                       )                              
            (          )                                                     
[ predicted structure ] ((((((((..((((........)))).(((((.......))))).....(((((.......)))))))))))))...
4X4P_B [ FASTA input ] GGCCGCGGCAGGUUCGAGUCCUGCCGCGAUCGCCAC
[ reference std structure ] ((((((((((((.......)))))))))...)))..
[ reference ext structure ] ((((((((((((.......)))))))))...)))..
[ predicted structure ] ((((((((((((.......)))))))))...)))..
4XW7_A [ FASTA input ] GGGUCGUGACUGGCGAACAGGUGGGAAACCACCGGGGAGCGACCCUUGCCGCCCGCCUGGGCAA
[ reference std structure ] (((((((..((........(((((....))))).))..)))))))(((((.........)))))
[ reference ext structure ] ((((((((((((......[[[[[[...)]]]]]])))))))))))(((((.........)))))
[ predicted structure ] ((((((.............(((((....)))))......))))))(((((.........)))))
4Y1J_A [ FASTA input ] AAAGGGGAGUAGCGUCGGGAAACCGAAACAAAGUCGUCUAUUCGUGAGGAAACUCACCGGCUUUGUUGACAUACGAAAGUAUGUUUAGCAAGACCUUUCC
[ reference std structure ] (((((......((.((((....))))((((((((((.......(((((....)))))))))))))))(((((((....)))))))..))....)))))..
[ reference ext structure ] ((((((((()[[[[(((((..)))))[[[[[[[[.()......(((((....))))).)]]]]]]]]((((((((..))))))))].]]].)))))))..
                                   (                     )                                          
         (                                                                                )         
             (                                                                        )             
                                  (                       )                                         
[ predicted structure ] ...((((((.....((((....))))((((((((((.......(((((....))))))))))))))).((((((....))))))..........))))))
4YAZ_R [ FASTA input ] GUACACGACAAUACUAAACCAUCCGCGAGGAUGGGGCGGAAAGCCUAAGGGUCUCCCUGAGACAGCCGGGCUGCCGAAAUAUC
[ reference std structure ] (((..((......((...((((((....))))))..[))...{{{{..{{(((((...))))).]}}}}}}...))...))).
[ reference ext structure ] (((..((......(((.((((((((.[)))))))).))).{.{{{{..{{{{{](...).}}}..}}}}}}}..))...))).
         (                                                                )        
                                                                           ()      
                                     (   )                                         
                           (                                )                      
                                    (                           )                  
                                                     (     )                       
     (                                                                       )     
[ predicted structure ] .....................(((((.........)))))...............((((.......)))).............
4ZNP_A [ FASTA input ] GGGAUACAGGACUGGCGGAUUAGUGGGAAACCACGUGGACUGUAUCCGAAAAAAAGCCGACCGCCUGGGCAUC
[ reference std structure ] .((((((((..(.[[[[[....((((....))))..)..))))))))........{{{..]]]]]..}}}...
[ reference ext structure ] (((((((((((((([{{{....{{{{...)}}}}.))))))))))))).......<<<.]}}}....>>>...
             (                                                  )        
              (                                                )         
[ predicted structure ] .((((((((...(((...............)))......))))))))........(((.........)))...
5A17_A [ FASTA input ] GACGAUAUCGAGCAUCAAGAGUGAAUAUCGUC
[ reference std structure ] ((((((((((..(.....)..)).))))))))
[ reference ext structure ] (((((((((((((.....))))).))))))))
[ predicted structure ] ((((((((................))))))))
5AXW_B [ FASTA input ] GGAAAUUAGGUGCGCUUGGCGUUUUAGUACUCUGGAAACAGAAUCUACUAAAACAAGGCAAAAUGCCGUGUU
[ reference std structure ] ....................(((((((((.((((....))))...)))))))))..(((.....))).....
[ reference ext structure ] ....................((((((((((((((....)))))..))))))))).(((((..).))))....
[ predicted structure ] .............((((...(((((((((.((((....))))...))))))))).)))).............
5CCB_N [ FASTA input ] GGCCCGGAUAGCUCAGUCGGUAGAGCAUCAGACUUUUAAUCUGAGGGUCCAGGGUUCAAGUCCCUGUUCGGGCGCCA
[ reference std structure ] .(((((((..((((........)))).(((((.(...).))))).....(((((.......))))))))))))....
[ reference ext structure ] ((((((((([{{.{).......}]}}((((((((...))))))))....(((((.......)))))))))))))...
                      (                       )                              
        (            )                                                       
            (          )                                                     
(                                                                          ) 
 (                                                                         ) 
[ predicted structure ] .((((((((((...(((((((.....))).))))...((((...........)))).......))))))))))....
5D3G_E [ FASTA input ] ACCCCCCCUUCGGUGCUUUGCACCGAAGGGGGGG
[ reference std structure ] .(((((((((((((((...)))))))))))))))
[ reference ext structure ] .(((((((((((((((...)))))))))))))))
[ predicted structure ] .(((((((((((((((...)))))))))))))))
5DDR_A [ FASTA input ] CGUUGACCCAGGAAACUGGGCGGAAGUAAGGUCCAUUGCACUCCGGGCCUGAAGCAACGCG
[ reference std structure ] (((((.(((((....)))))..[.....((((((..........))))))....)))))].
[ reference ext structure ] (([[[(((((((..)))))))){.(()(((((((..........))))))).).]]].)}.
                          (                        )         
                                                     ( )     
 (                                                       )   
[ predicted structure ] (((((.(((((....)))))........((((((..........))))))....)))))..
5DI4_A [ FASTA input ] GGGUACUUAAGCCCACUGAUGAGUCGCUGGGAUGCGACGAAACGCCCA
[ reference std structure ] ...............(....).(((((......)))))..........
[ reference ext structure ] .........(.....(....)[[[[[[[)..].]]]]]].........
[ predicted structure ] (((........)))........(((((......)))))..........
5GAP_U [ FASTA input ] UUCUUGCCUUUUACCAGAAC
[ reference std structure ] .(((...........)))..
[ reference ext structure ] (((((.........))))).
[ predicted structure ] ((((...........)))).
5HLF_E [ FASTA input ] UACCCCCCCUUCGGUGCUUUGCACCGAAGGGGGGG
[ reference std structure ] ..(((((((((((((((...)))))))))))))))
[ reference ext structure ] ..(((((((((((((((...)))))))))))))))
[ predicted structure ] ..(((((((((((((((...)))))))))))))))


  • N/A - RNA 2D structure in Vienna format could not have been generated (most likely due to difficult to represent pseudoknot structure). Check secondary structure file for details.
  • std - standard base pair definition
  • ext - extended base pair definition

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