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RNA Secondary Structure Atlas - PDB - 3G4S_9



RNA: 3G4S_9
Rfam family: 5S_rRNA

UUAGGCGGCCACAGCGGUGGGGUUGCCUCCCGUACCCAUCCCGAACACGGAAGAUAAGCCCACCAGCGUUCCAGGGAGUACUGGAGUGCGCGAGCCUCUGGGAAAUCCGGUUCGCCGCCACC
Reference structure (std) [ sec struct ] ...((((((....((((.(........(.((((...(.....)...))))...)......).)).))....(..(......(((((.((....))))))).....)..)....))))))...
Reference structure (ext) [ sec struct ] ..([[[[[[.[..[[[[[[..[..)].((((((...({{...)}}.))).)....))...]]]].]]](((((((((.((((((((.(((..)))))))))))))))))))).]]]]]]...
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Afold [ FASTA input ] [ sec struct ] (..((((((......((((((.(((.((.((((.............)))).)).))).))))))..........(((...(..(((.((....)))))..)....))).....))))))..)
Carnac(20) [ FASTA input ] [ sec struct ] ...((((((......((((((.....................................))))))................((((((.........))))))............))))))...
Contrafold [ FASTA input ] [ sec struct ] ...((((((......((((((.(((.((.((((.............)))).)).))).)))))).(((((((((......)))))))))..(((((...((.....)))))))))))))...
HotKnots [ FASTA input ] [ sec struct ] ...((((((.((.((((((((.(((.((.((((.............)))).)).))).)))))).)).......(((...(..(((.((....)))))..)....))).))..))))))...
MXScarna(20) [ FASTA input ] [ sec struct ] ((.((((((....((((((((.(....((.........(((((....)))))))..).)))))).)).((...((.....((((((.((....))))))))....))..))..)))))))).
Mastr(seed) [ FASTA input ] [ sec struct ] ..........................................................................................................................
Mastr(20) [ FASTA input ] [ sec struct ] ((.((((((......(((((..................(((((....))))).......)))))................((((((.((....))))))))............)))))))).
McQFold [ FASTA input ] [ sec struct ] ...((((........((((((........((((.............))))........)))))).(((((((((......)))))))))(((((((....(((..))))))))))))))...
Murlet(20) [ FASTA input ] [ sec struct ] ..(((((((....(((((((.........((((.............)))).........))))).)).............(((((((.......)))))))............)))))))..
PETfold_pre2.0(seed) [ FASTA input ] [ sec struct ] ((.((((((....((((((((......((((((...(.....)...))))..))....)))))).))(..(((((...(.((((((.((....))))))))..).))))).).)))))))).
PETfold_pre2.0(20) [ FASTA input ] [ sec struct ] ((.((((((....((((((((......((((((...(.....)...))))..))....)))))).))(..((.((.....((((((.((....))))))))....)).))..))))))))).
Pknots [ FASTA input ] [ sec struct ] ...(((((((((....)))(((((...((((((((...((((((((.(....)....((......))))))..)))))))).((((.((....))))))))))))))).....))))))...
PknotsRG [ FASTA input ] [ sec struct ] ...((((((....((((((((.(((.((.((((.............)))).)).))).)))))).)).......(((...((((((.((....))))))))....))).....))))))...
RNASampler(20) [ FASTA input ] [ sec struct ] ...((((((......((((((.....................................))))))................((((((.........))))))............))))))...
RNAalifold(20) [ FASTA input ] [ sec struct ] ((.((((((....(((((((.........((((.............)))).........))))).))...((.((.....((((((.((....))))))))....)).))...)))))))).
RNAfold [ FASTA input ] [ sec struct ] ...((((((....((((((((.(((.((.((((.............)))).)).))).)))))).)).......(((...(..(((.((....)))))..)....))).....))))))...
RNAshapes [ FASTA input ] [ sec struct ] ......(((......((((((.(((.((.((((.............)))).)).))).)))))).(((..((..(((...((((((.((....))))))))....)))))..))).)))...
RNAsubopt [ FASTA input ] [ sec struct ] ...((((((....((((((((.((..((.(((...............))).))..)).)))))).(((((((((......)))))))))))(((((....((....)))))))))))))...
Sfold [ FASTA input ] [ sec struct ] ...((((((....((((((((.(((.((.((((.............)))).)).))).)))))).)).......(((...(..(((.((....)))))..)....))).....))))))...
UNAFold [ FASTA input ] [ sec struct ] ...((((((.((.((((((((.((..((.((((.............)))).))..)).)))))).)).......(((...(..(((.((....)))))..)....))).))..))))))...
Vsfold4 [ FASTA input ] [ sec struct ] ...(((((.(((....)))((((.((.....)))))).....((((.((((.................(((....)))..((((((.((....))))))))....)))))))).)))))...
Vsfold5 [ FASTA input ] [ sec struct ] ..((((((((.....{{{{{)))))))).((((..}}}}}......))))........((((...(((((((((......)))))))))[[[[[[[..))))......]]]]]]].......