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RNA Secondary Structure Atlas - PDB - 3J0L_a
RNA: 3J0L_a
Rfam family:
-
| GGAGGGCAAGUCAUGGUGCCAGCAGCCGCGGUAAUUCCAGCUCCAAUA | |||
| Reference structure (std) | [ sec struct ] | .((((....[.[.[[[.....[[..))]].......]]]]]))..... | |
| Reference structure (ext) | [ sec struct ] |
(([[[.())(.(.((((...(((..]])))...)..)))))].).... ( ) |
|
| Alterna | [ FASTA input ] | [ sec struct ] | ((((((((........)))).........((.....))..)))).... |
| CRWrnafold | [ FASTA input ] | [ sec struct ] | ((((((((........)))).((....))...........)))).... |
| CentroidFold | [ FASTA input ] | [ sec struct ] | ((((.............(((.((....)))))........)))).... |
| CentroidFold (ext) | [ FASTA input ] | [ sec struct ] | ((((.............(((.((....)))))........)))).... |
| CentroidHomfold‑LAST | [ FASTA input ] | [ sec struct ] | ..............(((.......)))..................... |
| ContextFold | [ FASTA input ] | [ sec struct ] | ((((.......(.(((.....((....)).......)))))))).... |
| Contrafold | [ FASTA input ] | [ sec struct ] | ((((..(.......((.(((.((....)))))....)).))))).... |
| Cylofold | [ FASTA input ] | [ sec struct ] | (((((((......[[[[)))....]]]]............)))).... |
| Fold | [ FASTA input ] | [ sec struct ] | ((((....(((.((.((((.....).))).)).)))....)))).... |
| HotKnots | [ FASTA input ] | [ sec struct ] | ((((((....)).(((((((.((....))))))...))).)))).... |
| IPknot | [ FASTA input ] | [ sec struct ] | (((((((.......[[[)))....]]]..((.....))..)))).... |
| MCFold (ext) | [ FASTA input ] | [ sec struct ] | (((.((((.(.(.(((..)))))))))((((((..))))))))).... |
| MCFold | [ FASTA input ] | [ sec struct ] | (((.(((..(.(.(((..))))).)))((.(.(..).).))))).... |
| MaxExpect | [ FASTA input ] | [ sec struct ] | ((((............((((.((....)))))).......)))).... |
| McQFold | [ FASTA input ] | [ sec struct ] | ((((((((........))))....................)))).... |
| Pknots | [ FASTA input ] | [ sec struct ] | ((((((((........)))).((....))((.....))..)))).... |
| PknotsRG | [ FASTA input ] | [ sec struct ] | ((((((((........)))).........((.....))..)))).... |
| ProbKnot | [ FASTA input ] | [ sec struct ] | ((((.........(((((((.((....))))))...))).)))).... |
| RDfolder | [ FASTA input ] | [ sec struct ] | ....((((........))))............................ |
| RNASLOpt | [ FASTA input ] | [ sec struct ] | ((((((((........))))....................)))).... |
| RNAfold | [ FASTA input ] | [ sec struct ] | ((((((((........)))).........((.....))..)))).... |
| RNAshapes | [ FASTA input ] | [ sec struct ] | ((((((((........)))).........((.....))..)))).... |
| RNAsubopt | [ FASTA input ] | [ sec struct ] | ((((((((........)))).((....))((.....))..)))).... |
| RNAwolf | [ FASTA input ] | [ sec struct ] | ((((((.((..(..).(((..)))(((..)))..))))..)))).... |
| RNAwolf (ext) | [ FASTA input ] | [ sec struct ] | ((((((.((..(..).(((..)))(((..)))..))))..)))).... |
| Sfold | [ FASTA input ] | [ sec struct ] | ((((((....)).(((((((.((....))))))...))).)))).... |
| UNAFold | [ FASTA input ] | [ sec struct ] | ((((((....)).(((((((.((....))))))...))).)))).... |
| Vsfold4 | [ FASTA input ] | [ sec struct ] | ((((............((((.((....)))))).......)))).... |
| Vsfold5 | [ FASTA input ] | [ sec struct ] | ((((............((((.((....)))))).......)))).... |