RNA Secondary Structure Atlas - PDB - 3J46_1

RNA: 3J46_1
Rfam family: -

			AAGGACGUGCUAAUCUGCGAUAAGCGUCGGUAAGGUGAUAUGAACCGUUAUAACCGGCGAUUU
Reference structure (std)		[ sec struct ]	....((((.[..[[[.))).....{{{{{{...{{{]]]..].}}}.......}}}}}}...)
Reference structure (ext)		[ sec struct ]	....(((([{..{{.{)))...}<<<<<<<<<<<<<]}}..}.>>>>....>>>>>>>>>..)       (              )                                                        (                     )                                             ()                                                                             (                 )
Afold	[ FASTA input ]	[ sec struct ]	(((....(((......))).....(((((((..(((.......)))......))))))).)))
CentroidFold	[ FASTA input ]	[ sec struct ]	........................(((((((..(((.......)))......)))))))....
CentroidFold (ext)	[ FASTA input ]	[ sec struct ]	........................(((((((..(((.......)))......)))))))....
CentroidHomfold‑LAST	[ FASTA input ]	[ sec struct ]	.....((((......)))).....((((((...(((.......))).......))))))....
ContextFold	[ FASTA input ]	[ sec struct ]	.....(((........)))..((.(((((((..(((.......)))......))))))).)).
Contrafold	[ FASTA input ]	[ sec struct ]	........................(((((((.((((.......)))....).)))))))....
DotKnot	[ FASTA input ]	[ sec struct ]	...(((.(((......))).....[[[[[[[..(((.......))))))...]]]]]]]....
Fold	[ FASTA input ]	[ sec struct ]	.......(((......))).....(((((((..(((.......)))......)))))))....
HotKnots	[ FASTA input ]	[ sec struct ]	...(((((((..[[[[))).....{{{{{{{.]]]].........))))...}}}}}}}....
IPknot	[ FASTA input ]	[ sec struct ]	........................(((((((..(((.......)))......)))))))....
MCFold (ext)	[ FASTA input ]	[ sec struct ]	.((((((((((((((...))))))))((((((((((((...)))))))....)))))))))))
MCFold	[ FASTA input ]	[ sec struct ]	.(((.((((((.(((...))).))))((((((.(((.......))).)....))))))).)))
MaxExpect	[ FASTA input ]	[ sec struct ]	.......(((......))).....(((((((..(((.......)))......)))))))....
McQFold	[ FASTA input ]	[ sec struct ]	........................(((((((..(((.......)))......)))))))....
NanoFolder	[ FASTA input ]	[ sec struct ]	...((((((([[[[[[))){{...<<<<<<<.]]]]aaa}}....)))).]]>>>>>>>AAA.
Pknots	[ FASTA input ]	[ sec struct ]	..((.....))...((......))((((((((((((.......))).))...)))))))....
PknotsRG	[ FASTA input ]	[ sec struct ]	.......(((......))).....(((((((..(((.......)))......)))))))....
ProbKnot	[ FASTA input ]	[ sec struct ]	.......(((......)))...((((((((((((((.......))).))...))))))).)).
RDfolder	[ FASTA input ]	[ sec struct ]	........................(((((((..(((.......)))......)))))))....
RNASLOpt	[ FASTA input ]	[ sec struct ]	.....((((......)))).....(((((((.......(((((....))))))))))))....
RNAfold	[ FASTA input ]	[ sec struct ]	.......(((......))).....(((((((..(((.......)))......)))))))....
RNAshapes	[ FASTA input ]	[ sec struct ]	.......(((......))).....(((((((..(((.......)))......)))))))....
RNAsubopt	[ FASTA input ]	[ sec struct ]	.......(((......))).....(((((((..(((.......)))......)))))))....
RNAwolf (ext)	[ FASTA input ]	[ sec struct ]	.(.((((..((.(((...))).))))))...((......)).((.(((........))).)))
RNAwolf	[ FASTA input ]	[ sec struct ]	...((((..((.(((...))).))))))..............((.(((........))).)).
Sfold	[ FASTA input ]	[ sec struct ]	........((......))......(((((((..(((.......)))......)))))))....
UNAFold	[ FASTA input ]	[ sec struct ]	........((......))......(((((((..(((.......)))......)))))))....
Vsfold4	[ FASTA input ]	[ sec struct ]	.....(((........))).....(((((((...(((((.......))))).)))))))....
Vsfold5	[ FASTA input ]	[ sec struct ]	.....(((........))).....(((((((...(((((.......))))).)))))))....

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