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RNA Secondary Structure Atlas - PDB - 3JB9_N
RNA: 3JB9_N
Rfam family:
U6
| GAUCUUCGGAUCACUUUGGUCAAAUUGAAACGAUACAGAGAAGAUUAGCAUGGCCCCUGCACAAGGAUGACACUGCGACAUUGAGAGAAA | |||
| Reference structure (std) | [ sec struct ] | .(........)........................................(..((((.....)))..).)................... | |
| Reference structure (ext) | [ sec struct ] | ((((....))))...........................((.....))(.[[[.[(((.....))).)]]]].................. | |
| CMfinder(20) | [ FASTA input ] | [ sec struct ] | .(((....))).............(((........))).........((.((...(((.....)))....))..)).............. |
| Carnac(seed) | [ FASTA input ] | [ sec struct ] | .......................................................................................... |
| Carnac(20) | [ FASTA input ] | [ sec struct ] | ((((....)))).............................................................................. |
| CentroidAlifold(seed) | [ FASTA input ] | [ sec struct ] | ((((....))))...........................................((.......))........................ |
| CentroidAlifold(20) | [ FASTA input ] | [ sec struct ] | ((((....))))...........................................((.......))........................ |
| CentroidFold (ext) | [ FASTA input ] | [ sec struct ] | .((((((................................))))))............................................. |
| CentroidFold | [ FASTA input ] | [ sec struct ] | (((((((................................))))))).((......(((.....)))........)).............. |
| ContextFold | [ FASTA input ] | [ sec struct ] | .(((....))).(..................................(((..(.((........))....)..)))....((....))). |
| Contrafold | [ FASTA input ] | [ sec struct ] | (((((((...((...................))......))))))).(((.(...(((.....)))....)..))).............. |
| DAFS(seed) | [ FASTA input ] | [ sec struct ] | (((..((.....))..)))................................(...(((.....)))....)................... |
| DAFS(20) | [ FASTA input ] | [ sec struct ] | ((((....)))..).................................((.((...(((.....)))....))..)).............. |
| DotKnot | [ FASTA input ] | [ sec struct ] | ((((....)))).(((((.................))))).......(((.....(((.....))).......))).............. |
| Fold | [ FASTA input ] | [ sec struct ] | (((((((.(((((...)))))...(((........))).))))))).(((((...(((.....)))....)).))).............. |
| HotKnots | [ FASTA input ] | [ sec struct ] | ((((....)))).((((((((..........))).))))).......(((((...(((.....)))....)).))).............. |
| IPknot | [ FASTA input ] | [ sec struct ] | ((((....))))...................................(((((...(((.....)))....)).))).............. |
| MXScarna(seed) | [ FASTA input ] | [ sec struct ] | (..........).......................((..(((...(.((.(....(((.....))).....).).)..)))).))..... |
| MXScarna(20) | [ FASTA input ] | [ sec struct ] | ((((....))))........((.............((.....(((((((.((...(((.....)))....))..))).)))).))..)). |
| Mastr(seed) | [ FASTA input ] | [ sec struct ] | .......................................................................................... |
| Mastr(20) | [ FASTA input ] | [ sec struct ] | ((((....))))............((....((...............(..((...(((.....)))....)).)...........))).) |
| MaxExpect | [ FASTA input ] | [ sec struct ] | (((((((.(((((...)))))....(.....).......))))))).(((((...(((.....)))....)).))).............. |
| McQFold | [ FASTA input ] | [ sec struct ] | (((((((.(((((...)))))..................)))))))...........((((............))))............. |
| Multilign(seed) | [ FASTA input ] | [ sec struct ] | .......................................................((.......))........................ |
| Multilign(20) | [ FASTA input ] | [ sec struct ] | ((((....))))...................................(((((...(((.....)))....)).))).............. |
| Murlet(seed) | [ FASTA input ] | [ sec struct ] | ...............................................(((.......))).............................. |
| Murlet(20) | [ FASTA input ] | [ sec struct ] | ...((((................................))))....(((.(...).))).............................. |
| NanoFolder | [ FASTA input ] | [ sec struct ] | ((((((([[.{{{{{{{{{{{{.((((...)))).....)))))))....}}}}}]]<<<<.}}}}aaa....>>>>.AAA}}}...... |
| PETfold_2.0(seed) | [ FASTA input ] | [ sec struct ] | ((((....)))).......................(...)..(.....).(.(.((((.....)))..).)).................. |
| PETfold_2.0(20) | [ FASTA input ] | [ sec struct ] | ((((....))))..................(................((...)).(((.....)))....(.............)....) |
| PETfold_pre2.0(seed) | [ FASTA input ] | [ sec struct ] | ((((....)))).......................(...)..(.....).(.(.((((.....)))..).)).................. |
| PETfold_pre2.0(20) | [ FASTA input ] | [ sec struct ] | ((((....))))..................(................((...)).(((.....)))....(.............)....) |
| PPfold(seed) | [ FASTA input ] | [ sec struct ] | .......................................................................................... |
| PPfold(20) | [ FASTA input ] | [ sec struct ] | ((((....))))...................................((...)).(((.....)))........................ |
| Pknots | [ FASTA input ] | [ sec struct ] | ((((....)))).((((((((..........))).))))).......(((((...(((.....)))[[[.)).)))..]]](....)... |
| PknotsRG | [ FASTA input ] | [ sec struct ] | ((((....)))).((((((((..........))).))))).......(((((...(((.....)))....)).))).............. |
| ProbKnot | [ FASTA input ] | [ sec struct ] | (((((((.(((((...)))))..(((.....))).....))))))).(((((...(((.....)))....)).))).............. |
| RDfolder | [ FASTA input ] | [ sec struct ] | .......................................................(((.....)))........................ |
| RNASLOpt | [ FASTA input ] | [ sec struct ] | (((((((.(((((...)))))..((((...)))).....)))))))...........((((............))))............. |
| RNASampler(20) | [ FASTA input ] | [ sec struct ] | ((((....))))..............................(((...(((...............)))..........)))........ |
| RNAalifold(seed) | [ FASTA input ] | [ sec struct ] | ...............................................(((.......))).............................. |
| RNAalifold(20) | [ FASTA input ] | [ sec struct ] | ...............................................(((.(....)))).............................. |
| RNAfold | [ FASTA input ] | [ sec struct ] | ((((....)))).((((((((..........))).))))).......(((((...(((.....)))....)).))).............. |
| RNAshapes | [ FASTA input ] | [ sec struct ] | ((((....)))).((((((((..........))).))))).......(((((...(((.....)))....)).))).............. |
| RNAsubopt | [ FASTA input ] | [ sec struct ] | ((((....)))).(((..(((...(((........))).........(((((...(((.....)))....)).))))))...)))..... |
| RNAwolf (ext) | [ FASTA input ] | [ sec struct ] | ..((((((..((((((((..))))))))..)))..(((...................((((......)).)))))((......))))).. |
| RNAwolf | [ FASTA input ] | [ sec struct ] | ..((((((..(((.((((..)))).)))..)))..(((...................((((......)).)))))(........)))).. |
| Sfold | [ FASTA input ] | [ sec struct ] | ((((....))))...................................(((((...(((.....)))....)).))).............. |
| TurboFold(seed) | [ FASTA input ] | [ sec struct ] | ((((....))))...................................(((((...(((.....)))....)).))).............. |
| TurboFold(20) | [ FASTA input ] | [ sec struct ] | ((((....))))...................................(((((...(((.....)))....)).))).............. |
| UNAFold | [ FASTA input ] | [ sec struct ] | ((((....)))).((((((((..........))).))))).......(((((...(((.....)))....)).))).............. |
| Vsfold4 | [ FASTA input ] | [ sec struct ] | .(((....)))..(((.(((((............................)))))..((((............)))).......)))... |
| Vsfold5 | [ FASTA input ] | [ sec struct ] | ((((....)))).(((.(((((............................)))))..((((............)))).......)))... |