RNA Secondary Structure Atlas - PDB - 4BY9_A

RNA: 4BY9_A
Rfam family: snoPyro_CD

			GCGAGCAAUGAUGAGUGAUGGGCGAACUGAGCUCGAAAGAGCAAUGAUGAGUGAUGGGCGAACUGAGCUCGC
Reference structure (std)		[ sec struct ]	((((((....................(...((((....))))......).................))))))
Reference structure (ext)		[ sec struct ]	((((((...((((.............(((((((((..)))))...)))).............))))))))))                           (                      )
Afold	[ FASTA input ]	[ sec struct ]	((((((........................((((....)))).......(((.........)))..))))))
CMfinder(seed)	[ FASTA input ]	[ sec struct ]	..........................(.(..(((.........((.....))))..).....).).......
Carnac(seed)	[ FASTA input ]	[ sec struct ]	........................................................................
CentroidAlifold(seed)	[ FASTA input ]	[ sec struct ]	........................................................................
CentroidFold (ext)	[ FASTA input ]	[ sec struct ]	((((((........................((((....))))........................))))))
CentroidFold	[ FASTA input ]	[ sec struct ]	((((((........((.....((.......((((....))))........)).....)).......))))))
CentroidHomfold‑LAST	[ FASTA input ]	[ sec struct ]	((((((........................((((....))))........................))))))
ContextFold	[ FASTA input ]	[ sec struct ]	((((((........((.....))..(((..((((....)))).......)))..............))))))
Contrafold	[ FASTA input ]	[ sec struct ]	((((((........((.....((.......((((....))))........)).....)).......))))))
DAFS(seed)	[ FASTA input ]	[ sec struct ]	........................................................................
DotKnot	[ FASTA input ]	[ sec struct ]	.............(((..[[[[[..)))..]]]]]..............(((...[[[[..)))..]]]]..
Fold	[ FASTA input ]	[ sec struct ]	((((((........((.....((.......((((....))))........)).....)).......))))))
HotKnots	[ FASTA input ]	[ sec struct ]	((((((.......(((.........)))..((((....))))........................))))))
IPknot	[ FASTA input ]	[ sec struct ]	((((((........................((((....))))........................))))))
MCFold (ext)	[ FASTA input ]	[ sec struct ]	.((((((((((((((((((((((((((...)))))))).))))))))))))))))))((((((...))))))
MCFold	[ FASTA input ]	[ sec struct ]	.(.(.((.(.((.(.((.(...(((.(...).)))....).)).).)).).)).).)((((.(...).))))
MXScarna(seed)	[ FASTA input ]	[ sec struct ]	.((..................................................................)).
Mastr(seed)	[ FASTA input ]	[ sec struct ]	........................................................................
MaxExpect	[ FASTA input ]	[ sec struct ]	((((((........................((((....))))........................))))))
McQFold	[ FASTA input ]	[ sec struct ]	((((((........................((((....))))........................))))))
Multilign(seed)	[ FASTA input ]	[ sec struct ]	........................................................................
Murlet(seed)	[ FASTA input ]	[ sec struct ]	........................................................................
NanoFolder	[ FASTA input ]	[ sec struct ]	((..[[.{{.{{..)).<<..aa....bbbbbbbb.....]].}}.}}..bb.>>..AA..BBBBBBBBBB.
PETfold_2.0(seed)	[ FASTA input ]	[ sec struct ]	.((....((...(.............)...................))(.............)......)).
PETfold_pre2.0(seed)	[ FASTA input ]	[ sec struct ]	.((....((.(((.............)................)).))(.............)......)).
PPfold(seed)	[ FASTA input ]	[ sec struct ]	.((.........(.............).....................(.............)......)).
Pknots	[ FASTA input ]	[ sec struct ]	((((((.((.....))..(((.....))).((((....)))).((.....))..(((.....))).))))))
PknotsRG	[ FASTA input ]	[ sec struct ]	((((((.......(((.........)))..((((....))))........................))))))
ProbKnot	[ FASTA input ]	[ sec struct ]	((((((............(((.....))).((((....))))............(((.....))).))))))
RDfolder	[ FASTA input ]	[ sec struct ]	.(((((.......(((.........)))..)))))......................((((.......))))
RNASLOpt	[ FASTA input ]	[ sec struct ]	((((((........................((((....))))........................))))))
RNASampler(seed)	[ FASTA input ]	[ sec struct ]	.............(((..............((((....))))...................)))........
RNAalifold(seed)	[ FASTA input ]	[ sec struct ]	........................................................................
RNAfold	[ FASTA input ]	[ sec struct ]	((((((.......(((.........)))..((((....))))........................))))))
RNAshapes	[ FASTA input ]	[ sec struct ]	((((((.......(((.........)))..((((....))))........................))))))
RNAsubopt	[ FASTA input ]	[ sec struct ]	((((((........................((((....)))).....(.(((.........))).)))))))
RNAwolf (ext)	[ FASTA input ]	[ sec struct ]	((((((........)).((......))..((((((..)))((........)).((......))..)))))))
RNAwolf	[ FASTA input ]	[ sec struct ]	((((((........))................((....))((........))................))))
RSpredict(seed)	[ FASTA input ]	[ sec struct ]	(((.....................(.....((..................))...........).....)))
Sfold	[ FASTA input ]	[ sec struct ]	((((((........................((((....))))........................))))))
TurboFold(seed)	[ FASTA input ]	[ sec struct ]	((((((........((.....((.......((((....))))........)).....)).......))))))
UNAFold	[ FASTA input ]	[ sec struct ]	((((((.......(((.........)))..((((....))))........................))))))
Vsfold4	[ FASTA input ]	[ sec struct ]	.....................(((......((((....))))..............(((.......))))))
Vsfold5	[ FASTA input ]	[ sec struct ]	.....................(((......((((....))))..............(((.......))))))

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