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RNA Secondary Structure Atlas - PDB - 4MGN_C
RNA: 4MGN_C
Rfam family:
T-box
| GAAUCAAUAGUAGUUAACCCUCUCUUCCGAAGCGAGCCGGGGGCGGUGGGAGCCCGGUGAAGACGGUUAAUGAAACGGCAGUUCC | |||
| Reference structure (std) | [ sec struct ] | (((.........(((((((...(((((.....(..[[[[[[..........)]]]]]]))))).)))))))..........))). | |
| Reference structure (ext) | [ sec struct ] |
(((.....(.(((((((((...(((((....([([{{{{{{....).]..)]}}}}}}))))).)))))))))).......))). ( ) |
|
| Afold | [ FASTA input ] | [ sec struct ] | ((((........(((((((.(((...(((..((..((((....))))....)).)))...))).))))))).........))).) |
| Carnac(seed) | [ FASTA input ] | [ sec struct ] | ..................................................................................... |
| CentroidAlifold(seed) | [ FASTA input ] | [ sec struct ] | ...................................((((((...........))))))........................... |
| CentroidFold | [ FASTA input ] | [ sec struct ] | ............(((((((.(((..((((..((..((((....))))....)).)))..)))).))))))).............. |
| CentroidFold (ext) | [ FASTA input ] | [ sec struct ] | ............((((((((..(((((........((((((...........))))))))))))))))))).............. |
| CentroidHomfold‑LAST | [ FASTA input ] | [ sec struct ] | ............(((((((....((((........((((((...........))))))))))..))))))).............. |
| ContextFold | [ FASTA input ] | [ sec struct ] | .(((.....((.(((((((...((((.........((((((...........)))))).)))).)))))))...))....))).. |
| Contrafold | [ FASTA input ] | [ sec struct ] | (((.........(((((((.(((..((((..((..((((....))))....)).)))..)))).)))))))....(....)))). |
| DAFS(seed) | [ FASTA input ] | [ sec struct ] | ............(......................(((((...(.......).)))))................((....))).. |
| DotKnot | [ FASTA input ] | [ sec struct ] | ............(((((((...(((((........(((..[[[[)))....]]]]...))))).))))))).............. |
| Fold | [ FASTA input ] | [ sec struct ] | ((((........(((((((.(((...(((..((..((((....))))....)).)))...))).))))))).........)))). |
| HotKnots | [ FASTA input ] | [ sec struct ] | ((((........(((((((.(((...(((..((..((((....))))....)).)))...))).))))))).........)))). |
| IPknot | [ FASTA input ] | [ sec struct ] | ............(((((((.(((...(((..((..((((....))))....)).)))...))).))))))).............. |
| MCFold (ext) | [ FASTA input ] | [ sec struct ] | (((((((((.(((((((((((((((((((..((..))))))))(((((((..))))))).))))))))))))))))))..)))). |
| MCFold | [ FASTA input ] | [ sec struct ] | (((((..(..(.(((((((.(((((((((..((..))))))))((.((((..)))).)).))).))))))).).)..)..)))). |
| MXScarna(seed) | [ FASTA input ] | [ sec struct ] | .......................................((..........))................................ |
| Mastr(seed) | [ FASTA input ] | [ sec struct ] | ..................................................................................... |
| MaxExpect | [ FASTA input ] | [ sec struct ] | ((((........(((((((.(((...(((..((..((((....))))....)).)))...))).))))))).........)))). |
| McQFold | [ FASTA input ] | [ sec struct ] | ............(((((((...(((((........((((((...........))))))))))).))))))).............. |
| NanoFolder | [ FASTA input ] | [ sec struct ] | ((((.....((.(((((((.(((((((((..((..[[[[[[.))..))))))]]]]]]..))).)))))))......)).)))). |
| PETfold_2.0(seed) | [ FASTA input ] | [ sec struct ] | ..........(.(((((((....((((........((((((.....(...).))))))))))..)))))))..)........... |
| PETfold_pre2.0(seed) | [ FASTA input ] | [ sec struct ] | ..........(.(((((((....((((........((((((.....(...).))))))))))..)))))))..)........... |
| PPfold(seed) | [ FASTA input ] | [ sec struct ] | (((...........(((((..((((((........(((((......(...)..)))))))))))))))).............))) |
| Pknots | [ FASTA input ] | [ sec struct ] | ............(((((((...((((((.....).[[[[.((((.......))))...))))).)))))))....]]]]...... |
| PknotsRG | [ FASTA input ] | [ sec struct ] | ((((.....((.(((((((.(((...(((..((..((((....))))....)).)))...))).)))))))...))....)))). |
| ProbKnot | [ FASTA input ] | [ sec struct ] | ((((........(((((((.((((..(((......((((....)))).......))).).))).))))))).........)))). |
| RDfolder | [ FASTA input ] | [ sec struct ] | .............((((((...(((((.........(((((...........))))).))))).))))))............... |
| RNASLOpt | [ FASTA input ] | [ sec struct ] | ((((........(((((((...(((((........((((((...........))))))))))).))))))).........)))). |
| RNAalifold(seed) | [ FASTA input ] | [ sec struct ] | ...................................((((((...........))))))........................... |
| RNAfold | [ FASTA input ] | [ sec struct ] | ((((.....((.(((((((.(((...(((..((..((((....))))....)).)))...))).)))))))...))....)))). |
| RNAshapes | [ FASTA input ] | [ sec struct ] | ((((.....((.(((((((.(((...(((..((..((((....))))....)).)))...))).)))))))...))....)))). |
| RNAsubopt | [ FASTA input ] | [ sec struct ] | ((((.....((.(((((((.(((...(((..((..((((....))))....)).)))...))).)))))))...))....)))). |
| RNAwolf (ext) | [ FASTA input ] | [ sec struct ] | (((((((((..(.(((((((((((......)).))((((((.((......))))))))....).)))))).)..)))).))))). |
| RNAwolf | [ FASTA input ] | [ sec struct ] | (((..((.......(((((.(((........).))((((((...........))))))......))))).......))...))). |
| RSpredict(seed) | [ FASTA input ] | [ sec struct ] | ..................................................................................... |
| Sfold | [ FASTA input ] | [ sec struct ] | ((((........(((((((.(((...(((..((..((((....))))....)).)))...))).))))))).........)))). |
| TurboFold(seed) | [ FASTA input ] | [ sec struct ] | .................(((.((((((((........)))))).)).))).(.(((.......)))).......((....))... |
| UNAFold | [ FASTA input ] | [ sec struct ] | ((((........(((((((.(((...(((..((..((((....))))....)).)))...))).))))))).........)))). |
| Vsfold4 | [ FASTA input ] | [ sec struct ] | ............(((((((.......(((........)))((((.......)))).........))))))).............. |
| Vsfold5 | [ FASTA input ] | [ sec struct ] | ((((.............(((((.[[[[[[......[[[)))))...]]]]]]...]]]......................)))). |