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RNA Secondary Structure Atlas - PDB - 4PJO_2
RNA: 4PJO_2
Rfam family:
-
| GACUUACCUGGCAGUGAGGUGCACACACUGCAUAAUUUGUGGUAGUG | |||
| Reference structure (std) | [ sec struct ] | ..........((((((.........))))))................ | |
| Reference structure (ext) | [ sec struct ] | ..........(((((((.......)))))))................ | |
| CentroidFold (ext) | [ FASTA input ] | [ sec struct ] | .....(((..((((((.(.....).)))))).........))).... |
| CentroidFold | [ FASTA input ] | [ sec struct ] | ..........((((((.(.....).))))))................ |
| ContextFold | [ FASTA input ] | [ sec struct ] | .(((.(((..((((((.........)))))).........)))))). |
| Contrafold | [ FASTA input ] | [ sec struct ] | ....((((..((((((.(.....).)))))).........))))... |
| DotKnot | [ FASTA input ] | [ sec struct ] | ....(((((.[[[[[[)))))....]]]]]]................ |
| Fold | [ FASTA input ] | [ sec struct ] | ....(((((.......)))))..(((((((((.....)))))).))) |
| HotKnots | [ FASTA input ] | [ sec struct ] | ....(((((.[[[[[[))))){{{{]]]]]]......}}}}...... |
| IPknot | [ FASTA input ] | [ sec struct ] | .....(((.........))....[[[.(((((.....)))))).]]] |
| MaxExpect | [ FASTA input ] | [ sec struct ] | ....(((((.......)))))..(((((((((.....)))))).))) |
| McQFold | [ FASTA input ] | [ sec struct ] | ...(((((..((((((.........)))))).........))))).. |
| NanoFolder | [ FASTA input ] | [ sec struct ] | .((((((((.[[[[[[))))){{{{]]]]]]<<....}}}}>>))). |
| Pknots | [ FASTA input ] | [ sec struct ] | ....(((((.[[[[[[)))))....]]]]]]................ |
| PknotsRG | [ FASTA input ] | [ sec struct ] | ....(((((.[[[[[[)))))....]]]]]]................ |
| ProbKnot | [ FASTA input ] | [ sec struct ] | ....(((((.......)))))..(((((((((.....)))))).))) |
| RDfolder | [ FASTA input ] | [ sec struct ] | ....((((..((((((.........)))))).........))))... |
| RNASLOpt | [ FASTA input ] | [ sec struct ] | ...(((((..((((((.........)))))).........))))).. |
| RNAfold | [ FASTA input ] | [ sec struct ] | .(((.(((..((((((.(.....).)))))).........)))))). |
| RNAshapes | [ FASTA input ] | [ sec struct ] | ..(((((......))))).....(((((..((.....))..)).))) |
| RNAsubopt | [ FASTA input ] | [ sec struct ] | .((.((((..((((((.(.....).)))))).........)))))). |
| RNAwolf | [ FASTA input ] | [ sec struct ] | .((((((......))))))..((((((((........)))))..))) |
| RNAwolf (ext) | [ FASTA input ] | [ sec struct ] | .((((((......))))))..((((((((........)))))..))) |
| Sfold | [ FASTA input ] | [ sec struct ] | .((.((((..((((((.(.....).)))))).........)))))). |
| UNAFold | [ FASTA input ] | [ sec struct ] | .((.((((..((((....(((((.....)))))...)))))))))). |
| Vsfold4 | [ FASTA input ] | [ sec struct ] | ....(((((.......))))).....((((((.....)))))).... |
| Vsfold5 | [ FASTA input ] | [ sec struct ] | ....(((((.......)))))....((((((..........)))))) |