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RNA Secondary Structure Atlas - PDB - 4PJO_4
RNA: 4PJO_4
Rfam family:
-
| GACUUACCUGGCAGUGAGGUGCACACACUGCAUAAUUUGUGGUAGUGG | |||
| Reference structure (std) | [ sec struct ] | ..........((((((.........))))))................. | |
| Reference structure (ext) | [ sec struct ] | ..........(((((((.......)))))))................. | |
| Afold | [ FASTA input ] | [ sec struct ] | (.(((((......))))).....(((((..((.....))..)).)))) |
| CentroidFold | [ FASTA input ] | [ sec struct ] | ..........((((((.(.....).))))))................. |
| CentroidFold (ext) | [ FASTA input ] | [ sec struct ] | ......(...((((((.........))))))..........)...... |
| ContextFold | [ FASTA input ] | [ sec struct ] | (.(((((......))))).).(((..((((((.....)))))).))). |
| Contrafold | [ FASTA input ] | [ sec struct ] | ....((((..((((((.(.....).)))))).........)))).... |
| DotKnot | [ FASTA input ] | [ sec struct ] | ....(((((.[[[[[[)))))....]]]]]]................. |
| Fold | [ FASTA input ] | [ sec struct ] | ....(((((.......)))))..(((((((((.....)))))).))). |
| HotKnots | [ FASTA input ] | [ sec struct ] | ....(((((.[[[[[[))))){{{{]]]]]]......}}}}....... |
| IPknot | [ FASTA input ] | [ sec struct ] | .....((((.......))))...(((((((((.....)))))).))). |
| MaxExpect | [ FASTA input ] | [ sec struct ] | ....(((((.......)))))..(((((((((.....)))))).))). |
| McQFold | [ FASTA input ] | [ sec struct ] | ...(((((..((((((.........)))))).........)))))... |
| NanoFolder | [ FASTA input ] | [ sec struct ] | .((((((((.[[[[[[))))){{{{]]]]]]<<..aa}}}}>>)))AA |
| Pknots | [ FASTA input ] | [ sec struct ] | ....(((((.......)))))..(((((((((.....)))))).))). |
| PknotsRG | [ FASTA input ] | [ sec struct ] | ....(((((.[[[[[[)))))....]]]]]]................. |
| ProbKnot | [ FASTA input ] | [ sec struct ] | ....(((((.......)))))..(((((((((.....)))))).))). |
| RDfolder | [ FASTA input ] | [ sec struct ] | .....((((.......))))...(((((((((.....)))))).))). |
| RNASLOpt | [ FASTA input ] | [ sec struct ] | ..(((((......))))).......((((((..........)))))). |
| RNAfold | [ FASTA input ] | [ sec struct ] | ..(((((......))))).....(((((..((.....))..)).))). |
| RNAshapes | [ FASTA input ] | [ sec struct ] | ..(((((......))))).....(((((..((.....))..)).))). |
| RNAsubopt | [ FASTA input ] | [ sec struct ] | ..(((((......))))).....(((((..((.....))..)).))). |
| RNAwolf (ext) | [ FASTA input ] | [ sec struct ] | .((((((......))))))..((((((((........)))))..))). |
| RNAwolf | [ FASTA input ] | [ sec struct ] | .((((((......))))))..((((((((........)))))..))). |
| Sfold | [ FASTA input ] | [ sec struct ] | .......................(((((..((.....))..)).))). |
| UNAFold | [ FASTA input ] | [ sec struct ] | ..(((((......))))).....(((((..((.....))..)).))). |
| Vsfold4 | [ FASTA input ] | [ sec struct ] | ....(((((.......))))).....((((((.....))))))..... |
| Vsfold5 | [ FASTA input ] | [ sec struct ] | ....(((((.......)))))....((((((..........)))))). |