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RNA Secondary Structure Atlas - PDB - 4QJD_B
RNA: 4QJD_B
Rfam family:
-
| GUAAAUGAUAUAGCCGGUCCCAAGCCCGGAAAAAGGAGGAGGGUAUA | |||
| Reference structure (std) | [ sec struct ] | .............((((.[[[....))))...........]]].... | |
| Reference structure (ext) | [ sec struct ] | .............((((([[[[)[.))))....].....]]]].... | |
| CentroidFold (ext) | [ FASTA input ] | [ sec struct ] | .............((((........)))).................. |
| CentroidFold | [ FASTA input ] | [ sec struct ] | .............((((.(....).)))).................. |
| ContextFold | [ FASTA input ] | [ sec struct ] | .((.......))...(..(((...(((.......)).)..)))..). |
| Contrafold | [ FASTA input ] | [ sec struct ] | .............((((.(....).)))).................. |
| DotKnot | [ FASTA input ] | [ sec struct ] | .................(((...[[[[)))..........]]]]... |
| Fold | [ FASTA input ] | [ sec struct ] | ........((((.((..(((..............)))...)).)))) |
| HotKnots | [ FASTA input ] | [ sec struct ] | ........((((.((..(((.....((.......)).))))).)))) |
| IPknot | [ FASTA input ] | [ sec struct ] | ............................................... |
| MaxExpect | [ FASTA input ] | [ sec struct ] | .........(((.((...((..............))....)).))). |
| McQFold | [ FASTA input ] | [ sec struct ] | .............((((........)))).................. |
| NanoFolder | [ FASTA input ] | [ sec struct ] | (((..[[.)))..{{..{{{]].<<<<}}}.......}}.>>>>... |
| Pknots | [ FASTA input ] | [ sec struct ] | ......(((.......)))....((((.............))))... |
| PknotsRG | [ FASTA input ] | [ sec struct ] | .................(((...[[[[)))..........]]]]... |
| ProbKnot | [ FASTA input ] | [ sec struct ] | ........((((...............................)))) |
| RDfolder | [ FASTA input ] | [ sec struct ] | .............((((........)))).................. |
| RNASLOpt | [ FASTA input ] | [ sec struct ] | .......................((((.............))))... |
| RNAfold | [ FASTA input ] | [ sec struct ] | ........((((.((..(((....((........)).))))).)))) |
| RNAshapes | [ FASTA input ] | [ sec struct ] | ........((((.((..(((....((........)).))))).)))) |
| RNAsubopt | [ FASTA input ] | [ sec struct ] | ........((((.((..(((....((........)).))))).)))) |
| RNAwolf | [ FASTA input ] | [ sec struct ] | ........((((.((....((.............))....)).)))) |
| RNAwolf (ext) | [ FASTA input ] | [ sec struct ] | ........(((((((((..((((.(((..)))))))..))))))))) |
| Sfold | [ FASTA input ] | [ sec struct ] | .........(((.((.........................)).))). |
| UNAFold | [ FASTA input ] | [ sec struct ] | ........((((.((..(((.....((.......)).))))).)))) |
| Vsfold4 | [ FASTA input ] | [ sec struct ] | .......................((((.............))))... |
| Vsfold5 | [ FASTA input ] | [ sec struct ] | .......((((..((((........)))).............)))). |