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RNA Secondary Structure Atlas - PDB - 4QJD_D
RNA: 4QJD_D
Rfam family:
-
| UAAAUGAUAUAGCCGGUCCCAAGCCCGGAAAAAGGAGGAGGGUAUA | |||
| Reference structure (std) | [ sec struct ] | ............((((.[[[....))))...........]]].... | |
| Reference structure (ext) | [ sec struct ] | ............((((([[[[)[.))))....].....]]]].... | |
| Afold | [ FASTA input ] | [ sec struct ] | ((...(((.......)))....((((.............)))).)) |
| CentroidFold | [ FASTA input ] | [ sec struct ] | ............((((.(....).)))).................. |
| CentroidFold (ext) | [ FASTA input ] | [ sec struct ] | ............((((........)))).................. |
| ContextFold | [ FASTA input ] | [ sec struct ] | .(.......)....(..(((...(((.......)).)..)))..). |
| Contrafold | [ FASTA input ] | [ sec struct ] | ............((((.(....).)))).................. |
| DotKnot | [ FASTA input ] | [ sec struct ] | ................(((...[[[[)))..........]]]]... |
| Fold | [ FASTA input ] | [ sec struct ] | .......((((.((..(((..............)))...)).)))) |
| HotKnots | [ FASTA input ] | [ sec struct ] | .......((((.((..(((.....((.......)).))))).)))) |
| IPknot | [ FASTA input ] | [ sec struct ] | .............................................. |
| MaxExpect | [ FASTA input ] | [ sec struct ] | ........(((.((...((..............))....)).))). |
| McQFold | [ FASTA input ] | [ sec struct ] | ............((((........)))).................. |
| NanoFolder | [ FASTA input ] | [ sec struct ] | ....((.[[[..[[..{{{)).<<<<.......]].}}}>>>>]]] |
| Pknots | [ FASTA input ] | [ sec struct ] | .....(((.......)))....((((.............))))... |
| PknotsRG | [ FASTA input ] | [ sec struct ] | ................(((...[[[[)))..........]]]]... |
| ProbKnot | [ FASTA input ] | [ sec struct ] | .......((((.....(((..............)))......)))) |
| RDfolder | [ FASTA input ] | [ sec struct ] | ............((((........)))).................. |
| RNASLOpt | [ FASTA input ] | [ sec struct ] | ......................((((.............))))... |
| RNAfold | [ FASTA input ] | [ sec struct ] | .......((((.((..(((....((........)).))))).)))) |
| RNAshapes | [ FASTA input ] | [ sec struct ] | .......((((.((..(((....((........)).))))).)))) |
| RNAsubopt | [ FASTA input ] | [ sec struct ] | .......((((.((..(((....((........)).))))).)))) |
| RNAwolf | [ FASTA input ] | [ sec struct ] | .......((((.((....((.............))....)).)))) |
| RNAwolf (ext) | [ FASTA input ] | [ sec struct ] | .......(((((((((..((((.(((..)))))))..))))))))) |
| Sfold | [ FASTA input ] | [ sec struct ] | ........(((.((.........................)).))). |
| UNAFold | [ FASTA input ] | [ sec struct ] | .......((((.((..(((.....((.......)).))))).)))) |
| Vsfold4 | [ FASTA input ] | [ sec struct ] | ............((((........)))).................. |
| Vsfold5 | [ FASTA input ] | [ sec struct ] | ............((((........)))).................. |