CompaRNA - on-line benchmarks of RNA structure prediction methods
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RNA Secondary Structure Atlas - PDB - 4ZNP_A



RNA: 4ZNP_A
Rfam family: pfl

GGGAUACAGGACUGGCGGAUUAGUGGGAAACCACGUGGACUGUAUCCGAAAAAAAGCCGACCGCCUGGGCAUC
Reference structure (std) [ sec struct ] .((((((((..(.[[[[[....((((....))))..)..))))))))........{{{..]]]]]..}}}...
Reference structure (ext) [ sec struct ] (((((((((((((([{{{....{{{{...)}}}}.))))))))))))).......<<<.]}}}....>>>...
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Afold [ FASTA input ] [ sec struct ] ((....((((.(.(((((....((((....)))).((((.....))))........))).)))))))....))
CMfinder(20) [ FASTA input ] [ sec struct ] .((.(....).))(((((....((((....))))..........................)))))........
Carnac(seed) [ FASTA input ] [ sec struct ] .........................................................................
Carnac(20) [ FASTA input ] [ sec struct ] .((((((((.............((((....)))).....))))))))..........................
CentroidAlifold(seed) [ FASTA input ] [ sec struct ] ..(((((((..(....).....((((....)))).....))))))).........(((.........)))...
CentroidAlifold(20) [ FASTA input ] [ sec struct ] ..(((((((.............((((....)))).....))))))).........(((.........)))...
CentroidFold (ext) [ FASTA input ] [ sec struct ] .(((((((((............((((....))))....)))))))))........(((.........)))...
CentroidFold [ FASTA input ] [ sec struct ] .((((((((..(...(......((((....)))))..).))))))))........(((.........)))...
ContextFold [ FASTA input ] [ sec struct ] ((..(.((((..((((((.(..((((....))))..(((.....))).......).))).))))))).)..))
Contrafold [ FASTA input ] [ sec struct ] .((((((((..((.((......((((....)))))))).))))))))........(((.......())))...
DAFS(seed) [ FASTA input ] [ sec struct ] .............((((....(((((....))))).(...)....................))))........
DAFS(20) [ FASTA input ] [ sec struct ] .((((((((..(....).....((((....)))).....))))))))........(((.........)))...
DotKnot [ FASTA input ] [ sec struct ] .((((((((....[[[[[....((((....)))).....)))))))).............]]]]]........
Fold [ FASTA input ] [ sec struct ] .((((((((.....((......((((....))))))...))))))))........(((.........)))...
HotKnots [ FASTA input ] [ sec struct ] .((((((((....[[[[[....((((....)))).....))))))))........{{{..]]]]]..}}}...
IPknot [ FASTA input ] [ sec struct ] .((((((((.............((((....)))).....))))))))........(((.........)))...
MXScarna(seed) [ FASTA input ] [ sec struct ] .((((((((.............((((....)))).....))))))).)......((((.........))))..
MXScarna(20) [ FASTA input ] [ sec struct ] .((((((((..((.........((((....))))).)..))))))))........(((.(.....).)))...
Mastr(seed) [ FASTA input ] [ sec struct ] .........................................................................
Mastr(20) [ FASTA input ] [ sec struct ] .......................(((....)))......................(((.........)))...
MaxExpect [ FASTA input ] [ sec struct ] .((((((((......(......((((....)))))....))))))))........(((.........)))...
McQFold [ FASTA input ] [ sec struct ] .((((((((....[[[[[....((((....)))).....))))))))........{{{..]]]]]..}}}...
Multilign(20) [ FASTA input ] [ sec struct ] .((((((((..((.........((((....))))..)).))))))))........(((.........)))...
Murlet(20) [ FASTA input ] [ sec struct ] ...((((((..(....).....((((....)))).....))))))..........(((.(.....).)))...
NanoFolder [ FASTA input ] [ sec struct ] .((((((((.((.[[[[[.[[.((((....))))))...))))))))]]......{{{<<]]]]]..}}}.>>
PETfold_2.0(seed) [ FASTA input ] [ sec struct ] ..((((((...((..(......((((....))))..).)))))))).........((((.....)..)))...
PETfold_2.0(20) [ FASTA input ] [ sec struct ] .((((((((..(..........((((....))))..)..))))))))........(((.........)))...
PETfold_pre2.0(seed) [ FASTA input ] [ sec struct ] ..(((((((...(..(......((((....))))..).)))))))).........((((.....)..)))...
PETfold_pre2.0(20) [ FASTA input ] [ sec struct ] .((((((((..(..........((((....))))..)..))))))))........(((.........)))...
PPfold(seed) [ FASTA input ] [ sec struct ] .........................................................................
PPfold(20) [ FASTA input ] [ sec struct ] .((((((((..(..........((((....))))..)..))))))))........(((.........)))...
Pknots [ FASTA input ] [ sec struct ] .((((((((..[[[[[[[....((((....)))).[[[.)))))))).........]]].]]]]].]].....
PknotsRG [ FASTA input ] [ sec struct ] .((((((((...[[[[......((((....)))).....))))))))........]]]]...((....))...
ProbKnot [ FASTA input ] [ sec struct ] .((((((((..((.((......((((....)))))))).))))))))........(((.........)))...
RDfolder [ FASTA input ] [ sec struct ] .((((((((...(((...............)))......))))))))........(((.........)))...
RNASLOpt [ FASTA input ] [ sec struct ] .((((((((.............((((....)))).....))))))))..........................
RNASampler(20) [ FASTA input ] [ sec struct ] .((((((((.............((((....)))).....))))))))........(((.........)))...
RNAalifold(seed) [ FASTA input ] [ sec struct ] ..(((((((..(....).....((((....)))).....)))))))................((....))...
RNAalifold(20) [ FASTA input ] [ sec struct ] ..(((((((..(....).....((((....)))).....))))))).........(((.........)))...
RNAfold [ FASTA input ] [ sec struct ] .((((((((..(..........((((....))))..)..))))))))........(((.(.....).)))...
RNAshapes [ FASTA input ] [ sec struct ] ......((((...(((((....((((....)))).((((.....))))........))).)).))))......
RNAsubopt [ FASTA input ] [ sec struct ] .((((((((..(..........((((....))))..)..))))))))........(((.(.....).)))...
RNAwolf (ext) [ FASTA input ] [ sec struct ] .((((((((..(.(((..)).)(((((..)))))....)))))))))((.((((((........)))))).))
RNAwolf [ FASTA input ] [ sec struct ] .((((((((....(.......)((((....)))).....))))))))((..(((((........)))))..))
Sfold [ FASTA input ] [ sec struct ] .((((((((..(..........((((....))))..)..))))))))........(((.(.....).)))...
TurboFold(seed) [ FASTA input ] [ sec struct ] .((((((((.............((((....)))).....))))))))........(((.........)))...
TurboFold(20) [ FASTA input ] [ sec struct ] .((((((((.............((((....)))).....))))))))........(((.........)))...
UNAFold [ FASTA input ] [ sec struct ] ......((((..((((((....((((....)))).((((.....))))........))).)))))))......
Vsfold4 [ FASTA input ] [ sec struct ] ......((((..((((......((((....)))).((((.....)))).......))))....))))......
Vsfold5 [ FASTA input ] [ sec struct ] ....(((((....[[[[[....((((....)))).[[[[)))))]]]]............]]]]]........