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RNA Secondary Structure Atlas - PDB - 5DI4_A
RNA: 5DI4_A
Rfam family:
Hammerhead_3
| GGGUACUUAAGCCCACUGAUGAGUCGCUGGGAUGCGACGAAACGCCCA | |||
| Reference structure (std) | [ sec struct ] | ...............(....).(((((......))))).......... | |
| Reference structure (ext) | [ sec struct ] | .........(.....(....)[[[[[[[)..].]]]]]]......... | |
| CMfinder(20) | [ FASTA input ] | [ sec struct ] | ......................(((((......))))).......... |
| Carnac(seed) | [ FASTA input ] | [ sec struct ] | ((((..................(((((......))))).....)))). |
| Carnac(20) | [ FASTA input ] | [ sec struct ] | ((((..................(((((......))))).....)))). |
| CentroidAlifold(seed) | [ FASTA input ] | [ sec struct ] | .((((((..)))))).......((((........)))).......... |
| CentroidAlifold(20) | [ FASTA input ] | [ sec struct ] | (.((((....))))........(((((......))))).........) |
| CentroidFold (ext) | [ FASTA input ] | [ sec struct ] | ((((......))))........(((((......))))).......... |
| CentroidFold | [ FASTA input ] | [ sec struct ] | ((((......))))........(((((......))))).......... |
| ContextFold | [ FASTA input ] | [ sec struct ] | ((((.......((((.(((....))).))))............)))). |
| Contrafold | [ FASTA input ] | [ sec struct ] | ((((......))))........(((((......))))).......... |
| DAFS(seed) | [ FASTA input ] | [ sec struct ] | (((((((...))..........(((((......))))).....))))) |
| DAFS(20) | [ FASTA input ] | [ sec struct ] | (((((((...)...........(((((......)))))....)))))) |
| DotKnot | [ FASTA input ] | [ sec struct ] | ((((.......((((.......[[[[[))))..]]]]].....)))). |
| Fold | [ FASTA input ] | [ sec struct ] | ((((......))))........(((((......))))).......... |
| HotKnots | [ FASTA input ] | [ sec struct ] | ((((......))))........(((((......))))).......... |
| IPknot | [ FASTA input ] | [ sec struct ] | ((((......))))........(((((......))))).......... |
| MXScarna(seed) | [ FASTA input ] | [ sec struct ] | ((((.((...............(((((......)))))...)))))). |
| MXScarna(20) | [ FASTA input ] | [ sec struct ] | ((((.((...............(((((......)))))...)))))). |
| Mastr(seed) | [ FASTA input ] | [ sec struct ] | ................................................ |
| Mastr(20) | [ FASTA input ] | [ sec struct ] | ((((((....))..........(((((......))))).....)))). |
| MaxExpect | [ FASTA input ] | [ sec struct ] | ((((......))))........(((((......))))).......... |
| McQFold | [ FASTA input ] | [ sec struct ] | ((((......))))........((((([[[[..)))))......]]]] |
| Multilign(seed) | [ FASTA input ] | [ sec struct ] | ((((......))))........(((((......))))).......... |
| Multilign(20) | [ FASTA input ] | [ sec struct ] | ((((......))))........(((((......))))).......... |
| Murlet(seed) | [ FASTA input ] | [ sec struct ] | ................................................ |
| Murlet(20) | [ FASTA input ] | [ sec struct ] | (((((((...)...........(((((......)))))....)))))) |
| NanoFolder | [ FASTA input ] | [ sec struct ] | ((((..(((..[[[[.)))...{{{{{]]]]..}}}}}.....)))). |
| PETfold_2.0(seed) | [ FASTA input ] | [ sec struct ] | ((((((....)))))(....).(((((......))))).........) |
| PETfold_2.0(20) | [ FASTA input ] | [ sec struct ] | (.((((....))))........(((((......))))).........) |
| PETfold_pre2.0(seed) | [ FASTA input ] | [ sec struct ] | ((((((....)))))(....).(((((......))))).........) |
| PETfold_pre2.0(20) | [ FASTA input ] | [ sec struct ] | (.((((....))))........(((((......))))).........) |
| PPfold(seed) | [ FASTA input ] | [ sec struct ] | .(((((....)))))(....).((((........)))).......... |
| PPfold(20) | [ FASTA input ] | [ sec struct ] | (.((((....))))........(((((......))))).........) |
| Pknots | [ FASTA input ] | [ sec struct ] | ((((......))))........(((((......))))).......... |
| PknotsRG | [ FASTA input ] | [ sec struct ] | ((((......))))........(((((.[[[..)))))......]]]. |
| ProbKnot | [ FASTA input ] | [ sec struct ] | ((((......))))........(((((......))))).......... |
| RDfolder | [ FASTA input ] | [ sec struct ] | (((........)))........(((((......))))).......... |
| RNASLOpt | [ FASTA input ] | [ sec struct ] | ((((......))))........(((((......))))).......... |
| RNASampler(seed) | [ FASTA input ] | [ sec struct ] | ................................................ |
| RNASampler(20) | [ FASTA input ] | [ sec struct ] | ((((..(((.......)))...(((((......))))).....)))). |
| RNAalifold(seed) | [ FASTA input ] | [ sec struct ] | .((((((..))))))........(((........)))........... |
| RNAalifold(20) | [ FASTA input ] | [ sec struct ] | (.(((((..)))))........(((((......))))).........) |
| RNAfold | [ FASTA input ] | [ sec struct ] | ((((......))))........(((((......))))).......... |
| RNAshapes | [ FASTA input ] | [ sec struct ] | ((((......))))........(((((......))))).......... |
| RNAsubopt | [ FASTA input ] | [ sec struct ] | ((((......))))........(((((......))))).......... |
| RNAwolf (ext) | [ FASTA input ] | [ sec struct ] | ((((......))))((((..))))...((((((........)).)))) |
| RNAwolf | [ FASTA input ] | [ sec struct ] | ((((......))))(((....)))...((((.............)))) |
| Sfold | [ FASTA input ] | [ sec struct ] | ((((......))))........(((((......))))).......... |
| TurboFold(seed) | [ FASTA input ] | [ sec struct ] | ((((......))))........(((((......))))).......... |
| TurboFold(20) | [ FASTA input ] | [ sec struct ] | ((((......))))........(((((......))))).......... |
| UNAFold | [ FASTA input ] | [ sec struct ] | ((((......))))........(((((......))))).......... |
| Vsfold4 | [ FASTA input ] | [ sec struct ] | ((((..(((..........)))(((((......))))).....)))). |
| Vsfold5 | [ FASTA input ] | [ sec struct ] | ((((......))))........((((([[[[..)))))......]]]] |