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RNA Secondary Structure Atlas - RNASTRAND - PDB_00012
RNA: PDB_00012
Rfam family:
mir-TAR
| GGCAGAUCUGAGCCUGGGAGCUCUCUGCC | |||
| Reference structure (ext) | [ sec struct ] | ..(((....((((......)))).))).. | |
| Afold | [ FASTA input ] | [ sec struct ] | ((((((...((((......)))))))))) |
| Alterna | [ FASTA input ] | [ sec struct ] | ((((((...((((......)))))))))) |
| CMfinder(seed) | [ FASTA input ] | [ sec struct ] | .(((((...((((......))))))))). |
| CMfinder(20) | [ FASTA input ] | [ sec struct ] | .(((((...((((......))))))))). |
| CRWrnafold | [ FASTA input ] | [ sec struct ] | ((((((...((((......)))))))))) |
| Carnac(seed) | [ FASTA input ] | [ sec struct ] | ((((((...((((......)))))))))) |
| Carnac(20) | [ FASTA input ] | [ sec struct ] | ((((((...((((......)))))))))) |
| CentroidAlifold(seed) | [ FASTA input ] | [ sec struct ] | .(((((...((((......))))))))). |
| CentroidAlifold(20) | [ FASTA input ] | [ sec struct ] | .(((((...((((......))))))))). |
| CentroidFold | [ FASTA input ] | [ sec struct ] | ((((((...((((......)))))))))) |
| CentroidHomfold‑LAST | [ FASTA input ] | [ sec struct ] | ..((((...((((......)))))))).. |
| ContextFold | [ FASTA input ] | [ sec struct ] | (((((....((((......)))).))))) |
| Contrafold | [ FASTA input ] | [ sec struct ] | ((((((...((((......)))))))))) |
| Cylofold | [ FASTA input ] | [ sec struct ] | ((((((...((((......)))))))))) |
| DAFS(seed) | [ FASTA input ] | [ sec struct ] | .(.(((...((((......))))))).). |
| DAFS(20) | [ FASTA input ] | [ sec struct ] | .(((((...((((......))))))))). |
| DotKnot | [ FASTA input ] | [ sec struct ] | ((((((...((((......)))))))))) |
| Fold | [ FASTA input ] | [ sec struct ] | ((((((...((((......)))))))))) |
| HotKnots | [ FASTA input ] | [ sec struct ] | ((((((...((((......)))))))))) |
| IPknot | [ FASTA input ] | [ sec struct ] | ((((((...((((......)))))))))) |
| MCFold (ext) | [ FASTA input ] | [ sec struct ] | ((((((...(((((...).)))))))))) |
| MXScarna(seed) | [ FASTA input ] | [ sec struct ] | ((((((...((((......)))))))))) |
| MXScarna(20) | [ FASTA input ] | [ sec struct ] | ((((((...((((......)))))))))) |
| Mastr(seed) | [ FASTA input ] | [ sec struct ] | ............................. |
| Mastr(20) | [ FASTA input ] | [ sec struct ] | ((((((...((((......)))))))))) |
| MaxExpect | [ FASTA input ] | [ sec struct ] | ((((((...((((......)))))))))) |
| McQFold | [ FASTA input ] | [ sec struct ] | ((((((...((((......)))))))))) |
| Multilign(20) | [ FASTA input ] | [ sec struct ] | ((((((...((((......)))))))))) |
| Murlet(seed) | [ FASTA input ] | [ sec struct ] | ..........(((......)))....... |
| Murlet(20) | [ FASTA input ] | [ sec struct ] | ..((((...((((......)))))))).. |
| PETfold_2.0(seed) | [ FASTA input ] | [ sec struct ] | .(((((...((((......))))))))). |
| PETfold_2.0(20) | [ FASTA input ] | [ sec struct ] | .(((((...((((......))))))))). |
| PETfold_pre2.0(seed) | [ FASTA input ] | [ sec struct ] | .(((((...((((......))))))))). |
| PETfold_pre2.0(20) | [ FASTA input ] | [ sec struct ] | .(((((...((((......))))))))). |
| PPfold(20) | [ FASTA input ] | [ sec struct ] | .(((((...((((......))))))))). |
| Pknots | [ FASTA input ] | [ sec struct ] | ((((((...((((......)))))))))) |
| PknotsRG | [ FASTA input ] | [ sec struct ] | ((((((...((((......)))))))))) |
| ProbKnot | [ FASTA input ] | [ sec struct ] | ((((((...((((.(...))))))))))) |
| RDfolder | [ FASTA input ] | [ sec struct ] | ((((((...((((......)))))))))) |
| RNASLOpt | [ FASTA input ] | [ sec struct ] | ((((((...((((......)))))))))) |
| RNASampler(seed) | [ FASTA input ] | [ sec struct ] | ((((((...((((......)))))))))) |
| RNASampler(20) | [ FASTA input ] | [ sec struct ] | .(((((...((((......))))))))). |
| RNAalifold(seed) | [ FASTA input ] | [ sec struct ] | ..........(((......)))....... |
| RNAalifold(20) | [ FASTA input ] | [ sec struct ] | .(((((...((((......))))))))). |
| RNAfold | [ FASTA input ] | [ sec struct ] | ((((((...((((......)))))))))) |
| RNAshapes | [ FASTA input ] | [ sec struct ] | ((((((...((((......)))))))))) |
| RNAsubopt | [ FASTA input ] | [ sec struct ] | ((((((...((((......)))))))))) |
| RNAwolf (ext) | [ FASTA input ] | [ sec struct ] | (((((.....(((......)))..))))) |
| RSpredict(seed) | [ FASTA input ] | [ sec struct ] | .((((....((((......)))).)))). |
| RSpredict(20) | [ FASTA input ] | [ sec struct ] | .(((((...((((......))))))))). |
| Sfold | [ FASTA input ] | [ sec struct ] | ((((((...((((......)))))))))) |
| TurboFold(seed) | [ FASTA input ] | [ sec struct ] | ((((((...((((......)))))))))) |
| TurboFold(20) | [ FASTA input ] | [ sec struct ] | ((((((...((((......)))))))))) |
| UNAFold | [ FASTA input ] | [ sec struct ] | ((((((...((((......)))))))))) |
| Vsfold4 | [ FASTA input ] | [ sec struct ] | ((((((...((((......)))))))))) |
| Vsfold5 | [ FASTA input ] | [ sec struct ] | (((((....((((......)))).))))) |