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RNA Secondary Structure Atlas - RNASTRAND - PDB_00553
RNA: PDB_00553
Rfam family:
mir-TAR
| GGCCAGAUCUGAGCCUGGGAGCUCUCUGGCC | |||
| Reference structure (ext) | [ sec struct ] | (((((((...((((......))))))))))) | |
| Afold | [ FASTA input ] | [ sec struct ] | (((((((...((((......))))))))))) |
| Alterna | [ FASTA input ] | [ sec struct ] | (((((((...((((......))))))))))) |
| CMfinder(seed) | [ FASTA input ] | [ sec struct ] | ............................... |
| CMfinder(20) | [ FASTA input ] | [ sec struct ] | ..(((((...((((......))))))))).. |
| CRWrnafold | [ FASTA input ] | [ sec struct ] | (((((((...((((......))))))))))) |
| Carnac(seed) | [ FASTA input ] | [ sec struct ] | (((((((.................))))))) |
| Carnac(20) | [ FASTA input ] | [ sec struct ] | ............................... |
| CentroidAlifold(seed) | [ FASTA input ] | [ sec struct ] | .((((((...((((......)))))))))). |
| CentroidAlifold(20) | [ FASTA input ] | [ sec struct ] | (((((((...((((......))))))))))) |
| CentroidFold | [ FASTA input ] | [ sec struct ] | (((((((...((((......))))))))))) |
| CentroidHomfold‑LAST | [ FASTA input ] | [ sec struct ] | (((((((...((((......))))))))))) |
| ContextFold | [ FASTA input ] | [ sec struct ] | ((((((....((((......)))).)))))) |
| Contrafold | [ FASTA input ] | [ sec struct ] | (((((((...((((......))))))))))) |
| Cylofold | [ FASTA input ] | [ sec struct ] | (((((((...((((......))))))))))) |
| DAFS(seed) | [ FASTA input ] | [ sec struct ] | .((((((...((((......)))))))))). |
| DAFS(20) | [ FASTA input ] | [ sec struct ] | .((((((...((((......)))))))))). |
| DotKnot | [ FASTA input ] | [ sec struct ] | (((((((...((((......))))))))))) |
| Fold | [ FASTA input ] | [ sec struct ] | (((((((...((((......))))))))))) |
| HotKnots | [ FASTA input ] | [ sec struct ] | (((((((...((((......))))))))))) |
| IPknot | [ FASTA input ] | [ sec struct ] | (((((((...((((......))))))))))) |
| MCFold (ext) | [ FASTA input ] | [ sec struct ] | (((((((...(((((...).))))))))))) |
| MXScarna(seed) | [ FASTA input ] | [ sec struct ] | ..(((((...((((......))))))))).. |
| MXScarna(20) | [ FASTA input ] | [ sec struct ] | (((((((...((((......))))))))))) |
| Mastr(seed) | [ FASTA input ] | [ sec struct ] | ............................... |
| Mastr(20) | [ FASTA input ] | [ sec struct ] | (((((((...((((......))))))))))) |
| MaxExpect | [ FASTA input ] | [ sec struct ] | (((((((...((((......))))))))))) |
| McQFold | [ FASTA input ] | [ sec struct ] | (((((((...((((......))))))))))) |
| Multilign(20) | [ FASTA input ] | [ sec struct ] | (((((((...((((......))))))))))) |
| Murlet(seed) | [ FASTA input ] | [ sec struct ] | (..........(((......)))......). |
| Murlet(20) | [ FASTA input ] | [ sec struct ] | (.........((((......)))).....). |
| PETfold_2.0(seed) | [ FASTA input ] | [ sec struct ] | (((((((...((((......))))))))))) |
| PETfold_2.0(20) | [ FASTA input ] | [ sec struct ] | (((((((...((((......))))))))))) |
| PETfold_pre2.0(seed) | [ FASTA input ] | [ sec struct ] | (((((((...((((......))))))))))) |
| PETfold_pre2.0(20) | [ FASTA input ] | [ sec struct ] | (((((((...((((......))))))))))) |
| PPfold(20) | [ FASTA input ] | [ sec struct ] | ..........((((......))))....... |
| Pknots | [ FASTA input ] | [ sec struct ] | (((((((...((((......))))))))))) |
| PknotsRG | [ FASTA input ] | [ sec struct ] | (((((((...((((......))))))))))) |
| ProbKnot | [ FASTA input ] | [ sec struct ] | (((((((...((((.(...)))))))))))) |
| RDfolder | [ FASTA input ] | [ sec struct ] | (((((((...((((......))))))))))) |
| RNASLOpt | [ FASTA input ] | [ sec struct ] | (((((((...((((......))))))))))) |
| RNASampler(seed) | [ FASTA input ] | [ sec struct ] | (((((((...((((......))))))))))) |
| RNASampler(20) | [ FASTA input ] | [ sec struct ] | (((((((...((((......))))))))))) |
| RNAalifold(seed) | [ FASTA input ] | [ sec struct ] | ...........(((......)))........ |
| RNAalifold(20) | [ FASTA input ] | [ sec struct ] | .(........((((......))))......) |
| RNAfold | [ FASTA input ] | [ sec struct ] | (((((((...((((......))))))))))) |
| RNAshapes | [ FASTA input ] | [ sec struct ] | (((((((...((((......))))))))))) |
| RNAsubopt | [ FASTA input ] | [ sec struct ] | (((((((...((((......))))))))))) |
| RNAwolf (ext) | [ FASTA input ] | [ sec struct ] | ((((((.....(((......)))..)))))) |
| RSpredict(seed) | [ FASTA input ] | [ sec struct ] | .(((((....((((......)))).))))). |
| RSpredict(20) | [ FASTA input ] | [ sec struct ] | .(((((....((((......)))).))))). |
| Sfold | [ FASTA input ] | [ sec struct ] | (((((((...((((......))))))))))) |
| TurboFold(20) | [ FASTA input ] | [ sec struct ] | (((((((...((((......))))))))))) |
| UNAFold | [ FASTA input ] | [ sec struct ] | (((((((...((((......))))))))))) |
| Vsfold4 | [ FASTA input ] | [ sec struct ] | (((((((...((((......))))))))))) |
| Vsfold5 | [ FASTA input ] | [ sec struct ] | ((((((....((((......)))).)))))) |