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RNA Secondary Structure Atlas - RNASTRAND - PDB_00741



RNA: PDB_00741
Rfam family: Entero_5_CRE

GGGCUAGCACUCUGGUAUUACGGUACCUUUGUGCGCCC
Reference structure (ext) [ sec struct ] ((((..(((((((((((((..)))))))))))))))))
Afold [ FASTA input ] [ sec struct ] ((((..((((...(((((....)))))...))))))))
Alterna [ FASTA input ] [ sec struct ] ((((..((((...(((((....)))))...))))))))
CMfinder(20) [ FASTA input ] [ sec struct ] .(((..((((...(((((....)))))...))))))).
CRWrnafold [ FASTA input ] [ sec struct ] ((((..((((...(((((....)))))...))))))))
Carnac(20) [ FASTA input ] [ sec struct ] .....((....))(((((....)))))...........
CentroidAlifold(seed) [ FASTA input ] [ sec struct ] ......((((...(((((....)))))...))))....
CentroidAlifold(20) [ FASTA input ] [ sec struct ] ......(((((..(((((....)))))..)))))....
CentroidFold [ FASTA input ] [ sec struct ] ((((..((((...(((((....)))))...))))))))
CentroidHomfold‑LAST [ FASTA input ] [ sec struct ] ((((..((((...(((((....)))))...))))))))
ContextFold [ FASTA input ] [ sec struct ] ((((..((((...(((((....)))))...))))))))
Contrafold [ FASTA input ] [ sec struct ] ((((..((((...(((((....)))))...))))))))
Cylofold [ FASTA input ] [ sec struct ] ((((..((((...(((((....)))))...))))))))
DAFS(seed) [ FASTA input ] [ sec struct ] ......((((...(((((....)))))...))))....
DAFS(20) [ FASTA input ] [ sec struct ] ((((..(((((..(((((....)))))..)))))))))
DotKnot [ FASTA input ] [ sec struct ] ((((..((((...(((((....)))))...))))))))
Fold [ FASTA input ] [ sec struct ] ((((..((((...(((((....)))))...))))))))
HotKnots [ FASTA input ] [ sec struct ] ((((..((((...(((((....)))))...))))))))
IPknot [ FASTA input ] [ sec struct ] ((((..((((...(((((....)))))...))))))))
MCFold (ext) [ FASTA input ] [ sec struct ] ((((..(((((((((((((..)))))))))))))))))
MXScarna(seed) [ FASTA input ] [ sec struct ] ((.(..(((((..(((((....)))))..)))))).))
MXScarna(20) [ FASTA input ] [ sec struct ] ((.(..(((((..(((((....)))))..)))))).))
Mastr(seed) [ FASTA input ] [ sec struct ] ......................................
Mastr(20) [ FASTA input ] [ sec struct ] ..((..(((((..(((((....)))))..)))))))..
MaxExpect [ FASTA input ] [ sec struct ] ((((..((((...(((((....)))))...))))))))
McQFold [ FASTA input ] [ sec struct ] ((((..((((...((((((..))))))...))))))))
Multilign(20) [ FASTA input ] [ sec struct ] ((((..((((...(((((....)))))...))))))))
Murlet(20) [ FASTA input ] [ sec struct ] ......((((...(((((....)))))...))))....
PETfold_2.0(seed) [ FASTA input ] [ sec struct ] .(((..(((((..(((((....)))))..)))))))).
PETfold_2.0(20) [ FASTA input ] [ sec struct ] .(((..((((...(((((....)))))...))))))).
PETfold_pre2.0(seed) [ FASTA input ] [ sec struct ] .((.(.(((((..(((((....)))))..)))))))).
PETfold_pre2.0(20) [ FASTA input ] [ sec struct ] .(((..((((...(((((....)))))...))))))).
PPfold(20) [ FASTA input ] [ sec struct ] .(((..((((...(((((....)))))...))))))).
Pknots [ FASTA input ] [ sec struct ] ((((..((((...(((((....)))))...))))))))
PknotsRG [ FASTA input ] [ sec struct ] ((((..((((...(((((....)))))...))))))))
ProbKnot [ FASTA input ] [ sec struct ] ((((..((((...(((((....)))))...))))))))
RDfolder [ FASTA input ] [ sec struct ] ((((..((((...((((......))))...))))))))
RNASLOpt [ FASTA input ] [ sec struct ] ((((..((((...(((((....)))))...))))))))
RNASampler(20) [ FASTA input ] [ sec struct ] ......((((...(((((....)))))...))))....
RNAalifold(seed) [ FASTA input ] [ sec struct ] ......((((...((((......))))...))))....
RNAalifold(20) [ FASTA input ] [ sec struct ] ......((((...(((((....)))))...))))....
RNAfold [ FASTA input ] [ sec struct ] ((((..((((...(((((....)))))...))))))))
RNAshapes [ FASTA input ] [ sec struct ] ((((..((((...(((((....)))))...))))))))
RNAsubopt [ FASTA input ] [ sec struct ] ((((..((((...(((((....)))))...))))))))
RNAwolf (ext) [ FASTA input ] [ sec struct ] ((((...((((((((((((..)))))))))))).))))
RSpredict(seed) [ FASTA input ] [ sec struct ] ......................................
RSpredict(20) [ FASTA input ] [ sec struct ] .(((..((((...(((((....)))))...))))))).
Sfold [ FASTA input ] [ sec struct ] ((((..((((...(((((....)))))...))))))))
TurboFold(20) [ FASTA input ] [ sec struct ] ((((..((((...(((((....)))))...))))))))
UNAFold [ FASTA input ] [ sec struct ] ((((..((((...(((((....)))))...))))))))
Vsfold4 [ FASTA input ] [ sec struct ] (((...((((...(((((....)))))...)))).)))
Vsfold5 [ FASTA input ] [ sec struct ] (((...((((...(((((....)))))...)))).)))