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RNA Secondary Structure Atlas - RNASTRAND - PDB_01001
RNA: PDB_01001
Rfam family:
tRNA
| CUCUCGGUAGCCAAGGGAAGGCGCAAGGUAAAUGAGUCGGGCGUUCGACUCGCCCCCGGGAGACCA | |||
| Reference structure (ext) | [ sec struct ] | (((((((..(((.......)))(((.......)))...(((((.......)))))))))))).... | |
| Alterna | [ FASTA input ] | [ sec struct ] | (((((((..(((.......)))....(((....(((((((....)))))))))).))))))).... |
| CRWrnafold | [ FASTA input ] | [ sec struct ] | (((((((..(((.......)))....(((....(((((((....)))))))))).))))))).... |
| Carnac(seed) | [ FASTA input ] | [ sec struct ] | .................................................................. |
| CentroidAlifold(seed) | [ FASTA input ] | [ sec struct ] | ((((((.....................................................)))))). |
| CentroidFold | [ FASTA input ] | [ sec struct ] | (((((((..(((.......)))..........((((((((....))))))))...))))))).... |
| CentroidHomfold‑LAST | [ FASTA input ] | [ sec struct ] | (((((((..(((.......)))...........(((((((....)))))))....))))))).... |
| ContextFold | [ FASTA input ] | [ sec struct ] | (((((((..(((.......)))................(((((.......)))))))))))).... |
| Contrafold | [ FASTA input ] | [ sec struct ] | ((((((((.(((.......))))...((....(((((((((()))))))))))).))))))).... |
| Cylofold | [ FASTA input ] | [ sec struct ] | (((((((..(((.......))).............((([[[[[...))).]]]]]))))))).... |
| DotKnot | [ FASTA input ] | [ sec struct ] | (((((((..(((.......[[[....)))....(((((((....)))))))]]].))))))).... |
| Fold | [ FASTA input ] | [ sec struct ] | (((((((..(((.......)))....(((....(((((((....)))))))))).))))))).... |
| HotKnots | [ FASTA input ] | [ sec struct ] | (((((((..(((.......)))....(((....(((((((....)))))))))).))))))).... |
| IPknot | [ FASTA input ] | [ sec struct ] | (((((((..(((.......)))................(((((.......)))))))))))).... |
| MCFold (ext) | [ FASTA input ] | [ sec struct ] | ((((((((((((((((((((((((((((((..)))))))))))))))))))))))))))))).... |
| MXScarna(seed) | [ FASTA input ] | [ sec struct ] | (((((((..((((.....))))..((((.......)))).......(.......)))))))).... |
| Mastr(seed) | [ FASTA input ] | [ sec struct ] | .................................................................. |
| MaxExpect | [ FASTA input ] | [ sec struct ] | (((((((..(((.......)))....(((....(((((((....)))))))))).))))))).... |
| McQFold | [ FASTA input ] | [ sec struct ] | (((((((.......(((...............(((((((((..))))))))))))))))))).... |
| PETfold_2.0(seed) | [ FASTA input ] | [ sec struct ] | (((((((..((((.....)))).((.......))....(((((.......)))))))))))).... |
| PETfold_pre2.0(seed) | [ FASTA input ] | [ sec struct ] | (((((((..((((.....)))).((.......))....(((((.......)))))))))))).... |
| PPfold(seed) | [ FASTA input ] | [ sec struct ] | .................................................................. |
| Pknots | [ FASTA input ] | [ sec struct ] | .........(((..[[[..)))....(((....(((((((....))))))))))]]]((....)). |
| PknotsRG | [ FASTA input ] | [ sec struct ] | (((((((..(((.......)))....(((....(((((((....)))))))))).))))))).... |
| ProbKnot | [ FASTA input ] | [ sec struct ] | (((((((..(((.......)))....(((....(((((((....)))))))))).))))))).... |
| RDfolder | [ FASTA input ] | [ sec struct ] | ((((.........)))).....................(((((.......)))))........... |
| RNASLOpt | [ FASTA input ] | [ sec struct ] | (((((((...............................(((((.......)))))))))))).... |
| RNAfold | [ FASTA input ] | [ sec struct ] | (((((((..(((.......)))....(((....(((((((....)))))))))).))))))).... |
| RNAshapes | [ FASTA input ] | [ sec struct ] | (((((((..(((.......)))....(((....(((((((....)))))))))).))))))).... |
| RNAsubopt | [ FASTA input ] | [ sec struct ] | (((((((..(((.......)))....(((....(((((((....)))))))))).))))))).... |
| RNAwolf (ext) | [ FASTA input ] | [ sec struct ] | (((((((.((((..)))).(((((((...))..)))))((((((...)..)))))))))))).... |
| RSpredict(seed) | [ FASTA input ] | [ sec struct ] | .....................................(.......................).... |
| Sfold | [ FASTA input ] | [ sec struct ] | (((((((..(((.......)))...........(((((((....)))))))....))))))).... |
| UNAFold | [ FASTA input ] | [ sec struct ] | (((((((..(((.......)))....(((....(((((((....)))))))))).))))))).... |
| Vsfold4 | [ FASTA input ] | [ sec struct ] | .((((.........))))..((((................))))....((((....))))...... |
| Vsfold5 | [ FASTA input ] | [ sec struct ] | .((((.........))))..((((........[[[[[[[.)))).]]]]]]].............. |