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RNA Secondary Structure Atlas - RNASTRAND - PDB_01199
RNA: PDB_01199
Rfam family:
-
| AUCGUAGCCAAUGAGGUUUAUCCGAGGCGCGAUAUCGUAGCCAAUGAGGUUUAUCCGAGGCGCGAU | |||
| Reference structure (ext) | [ sec struct ] | (((((.(((...((((.....))))))))))))(((((.(((...((((.....)))))))))))) | |
| Afold | [ FASTA input ] | [ sec struct ] | (((((.(((.....((.....))..((((((....))).))).....((.....))..)))))))) |
| Alterna | [ FASTA input ] | [ sec struct ] | (((((.(((.....((.....))..))))))))(((((.(((.....((.....))..)))))))) |
| CRWrnafold | [ FASTA input ] | [ sec struct ] | (((((.(((.....(((..(((...((((((....))).))).....)))..)))...)))))))) |
| CentroidFold | [ FASTA input ] | [ sec struct ] | (((((.(((.....((.....((..((((((....))).))).....)).....))..)))))))) |
| CentroidHomfold‑LAST | [ FASTA input ] | [ sec struct ] | .......(..................)....................................... |
| ContextFold | [ FASTA input ] | [ sec struct ] | (((((.(((.....((.....))..))))))))(((((.(((.....((.....))..)))))))) |
| Contrafold | [ FASTA input ] | [ sec struct ] | (((((.(((.....((.....((..(((((((())))).))).....)).....))..)))))))) |
| Cylofold | [ FASTA input ] | [ sec struct ] | .....((((.....))))....(((.[[[[....))).((((.....))))........]]]]... |
| DotKnot | [ FASTA input ] | [ sec struct ] | (((..((((.....))))........[[[[))).(((.((((.....))))....))).]]]]... |
| Fold | [ FASTA input ] | [ sec struct ] | (((((.(((.....((.....))..)))))))).((((.(((.....((.....))..))))))). |
| HotKnots | [ FASTA input ] | [ sec struct ] | (((((.(((.....((.....))..((((((....))).))).....((.....))..)))))))) |
| IPknot | [ FASTA input ] | [ sec struct ] | (((((.(((................))))))))(((((.(((................)))))))) |
| MCFold (ext) | [ FASTA input ] | [ sec struct ] | (((((.((((((((((((((((((((((((((..)))).))))))))))))))))))))))))))) |
| MaxExpect | [ FASTA input ] | [ sec struct ] | .((((.(((......(.....)...)))))))..((((.(((......(.....)...))))))). |
| McQFold | [ FASTA input ] | [ sec struct ] | (((((.(((................))))))))(((((.(((................)))))))) |
| NanoFolder | [ FASTA input ] | [ sec struct ] | .((((aaaa.))))AAAA((({((..<<<<)}))(((([[[[.))))]]]].((())..>>>>))) |
| Pknots | [ FASTA input ] | [ sec struct ] | (((((.(((................))))))))(((((.(((................)))))))) |
| PknotsRG | [ FASTA input ] | [ sec struct ] | (((((.(((.....((.....))..((((((....))).))).....((.....))..)))))))) |
| ProbKnot | [ FASTA input ] | [ sec struct ] | (((((.(((................))))))))(((((.(((................)))))))) |
| RDfolder | [ FASTA input ] | [ sec struct ] | .(((.((((.....))))....)))..((((...(((.((((.....))))....)))..)))).. |
| RNASLOpt | [ FASTA input ] | [ sec struct ] | .....((((.....))))........((((........((((.....))))........))))... |
| RNAfold | [ FASTA input ] | [ sec struct ] | (((((.(((.....((.....))..((((((....))).))).....((.....))..)))))))) |
| RNAshapes | [ FASTA input ] | [ sec struct ] | (((((.(((.....((.....))..((((((....))).))).....((.....))..)))))))) |
| RNAsubopt | [ FASTA input ] | [ sec struct ] | (((((.(((.....((.....))..((((((....))).))).....((.....))..)))))))) |
| RNAwolf (ext) | [ FASTA input ] | [ sec struct ] | (((((.(((................))))))))(((((.(((................)))))))) |
| Sfold | [ FASTA input ] | [ sec struct ] | .((((.(((................((((((....))).)))................))))))). |
| UNAFold | [ FASTA input ] | [ sec struct ] | (((((.(((.....((.....((..((((((....))).))).....)).....))..)))))))) |
| Vsfold4 | [ FASTA input ] | [ sec struct ] | .((((.(((.....))).((((........))))....((((.....))))..........)))). |
| Vsfold5 | [ FASTA input ] | [ sec struct ] | .((((.(((.....))).(((.((.....)))))....((((.....))))..........)))). |