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RNA Secondary Structure Atlas - RNASTRAND - RFA_00642
RNA: RFA_00642
Rfam family:
Vimentin3
| UUCAAAUUUGAAAUAUUUUGCACACUUAUACUUUCAAGUGCCUUUCUACACAUUUUUCCAUGAGCACAGGAUGGUUA | |||
| Reference structure (ext) | [ sec struct ] | ....(((((((((..................)))...((((.(((.((..........))))))))))))))).... | |
| Alterna | [ FASTA input ] | [ sec struct ] | .....((((((((..................))))))))(((.((((...(((......))).....)))).))).. |
| CMfinder(seed) | [ FASTA input ] | [ sec struct ] | .....................................((((..((.(............).)))))).......... |
| CRWrnafold | [ FASTA input ] | [ sec struct ] | .....(((((((((((...........))).))))))))(((..(((...(((......))).....)))..))).. |
| Carnac(seed) | [ FASTA input ] | [ sec struct ] | ............................................................................. |
| CentroidAlifold(seed) | [ FASTA input ] | [ sec struct ] | ......................................(((......................)))........... |
| CentroidFold | [ FASTA input ] | [ sec struct ] | ............................................................................. |
| CentroidHomfold‑LAST | [ FASTA input ] | [ sec struct ] | .(((........................................................))).............. |
| ContextFold | [ FASTA input ] | [ sec struct ] | .....((.......)).............(((.((..((((.((..(............).))))))..)).))).. |
| Contrafold | [ FASTA input ] | [ sec struct ] | .(((....)))...........(((((........)))))................(((.........)))...... |
| Cylofold | [ FASTA input ] | [ sec struct ] | .......((((((......[[[[........))))))]]]]................((((.........))))... |
| DAFS(seed) | [ FASTA input ] | [ sec struct ] | .......................................((......................))............ |
| DotKnot | [ FASTA input ] | [ sec struct ] | .....(((((((((((...........))).)))))))).................(((...[[[...)))..]]]. |
| Fold | [ FASTA input ] | [ sec struct ] | ((((....)))).................(((.((..((((.((.................))))))..)).))).. |
| HotKnots | [ FASTA input ] | [ sec struct ] | .....((((((((.....{{{..........)))))))).(((..............[[[[..}}}.)))]]]]... |
| IPknot | [ FASTA input ] | [ sec struct ] | .......((((((.........[[[......))))))]]]((..............................))... |
| MCFold (ext) | [ FASTA input ] | [ sec struct ] | ((((((((((..))))))))))((((((((..))))))))((((((((((((((....)))))))..)))))))... |
| MXScarna(seed) | [ FASTA input ] | [ sec struct ] | .((.(((((............................((((..(((((..........))))))))))).))))).. |
| Mastr(seed) | [ FASTA input ] | [ sec struct ] | ....((((((.........................................................)))))).... |
| MaxExpect | [ FASTA input ] | [ sec struct ] | .(((....)))...................((.((..(((........................)))..)).))... |
| McQFold | [ FASTA input ] | [ sec struct ] | (((((..))))).......((((..............))))................((((.........))))... |
| Murlet(seed) | [ FASTA input ] | [ sec struct ] | ....((((((...................(((....)))((......................))..)))))).... |
| PETfold_2.0(seed) | [ FASTA input ] | [ sec struct ] | .....(((((....................(((.....(((......)))...........)))...)))))..... |
| PETfold_pre2.0(seed) | [ FASTA input ] | [ sec struct ] | .....(((((....................(((.....(((......)))...........)))...)))))..... |
| Pknots | [ FASTA input ] | [ sec struct ] | ((((....))))..........(((((........)))))((((((...............)))...)))....... |
| PknotsRG | [ FASTA input ] | [ sec struct ] | ((((....))))......(((.(((((........))))).................[[[[..)))....]]]]... |
| ProbKnot | [ FASTA input ] | [ sec struct ] | ((((....)))).................(((.....((((.((.................)))))).....))).. |
| RDfolder | [ FASTA input ] | [ sec struct ] | ......................(((((........))))).................((((.........))))... |
| RNASLOpt | [ FASTA input ] | [ sec struct ] | ((((....)))).......((((..............))))................((((.........))))... |
| RNASampler(seed) | [ FASTA input ] | [ sec struct ] | .....((((((((..................)))).................................))))..... |
| RNAalifold(seed) | [ FASTA input ] | [ sec struct ] | ....((((((....................((....)).((((.................)).))..)))))).... |
| RNAfold | [ FASTA input ] | [ sec struct ] | ((((....)))).................(((.((..(((((...................).))))..)).))).. |
| RNAshapes | [ FASTA input ] | [ sec struct ] | ((((....)))).................(((.((..((((...((...............))))))..)).))).. |
| RNAsubopt | [ FASTA input ] | [ sec struct ] | .....(((((((((((...........))).))))))))(((.((((.(.(((......))).)...)))).))).. |
| RNAwolf (ext) | [ FASTA input ] | [ sec struct ] | (((((..)))))(...((((..(((((........))))).....((.(.((........))))).))))....).. |
| RSpredict(seed) | [ FASTA input ] | [ sec struct ] | .....((((.....................(((.....((........))...........)))....))))..... |
| Sfold | [ FASTA input ] | [ sec struct ] | ............................................................................. |
| UNAFold | [ FASTA input ] | [ sec struct ] | ((((....)))).................((..((..((((...((...............))))))..))..)).. |
| Vsfold4 | [ FASTA input ] | [ sec struct ] | .(((....)))........((((..............))))................((((.........))))... |
| Vsfold5 | [ FASTA input ] | [ sec struct ] | ((((....)))).......((((..............))))................((((.........))))... |