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RNA Secondary Structure Atlas - RNASTRAND - RFA_00658
RNA: RFA_00658
Rfam family:
Hammerhead_1
| AUCCAGCUGACGAGUCCCAAACAGGACGAAACGCGCGUCAAACUGCAU | |||
| Reference structure (ext) | [ sec struct ] | ((((((.......((((......))))...(((())))....)))))) | |
| Afold | [ FASTA input ] | [ sec struct ] | ((.(((.(((((.((((......))))........)))))..))).)) |
| Alterna | [ FASTA input ] | [ sec struct ] | ((.(((.(((((.((((......))))........)))))..))).)) |
| CMfinder(seed) | [ FASTA input ] | [ sec struct ] | ........((((.((((......))))........))))......... |
| CMfinder(20) | [ FASTA input ] | [ sec struct ] | ........((((.((((......))))........))))......... |
| CRWrnafold | [ FASTA input ] | [ sec struct ] | ...(((..((((.((((......))))........))))...)))... |
| Carnac(seed) | [ FASTA input ] | [ sec struct ] | .......(((((.((((......))))........)))))........ |
| Carnac(20) | [ FASTA input ] | [ sec struct ] | ................................................ |
| CentroidAlifold(seed) | [ FASTA input ] | [ sec struct ] | ((((((..((....((........))...........))...)))))) |
| CentroidAlifold(20) | [ FASTA input ] | [ sec struct ] | ((((((..((((.......................))))...)))))) |
| CentroidFold | [ FASTA input ] | [ sec struct ] | ...(((.(((((.((((......))))........)))))..)))... |
| CentroidHomfold‑LAST | [ FASTA input ] | [ sec struct ] | ((.(((.(((((.((((......))))........)))))..))).)) |
| ContextFold | [ FASTA input ] | [ sec struct ] | ((.(((.......((((......))))...((....))....))).)) |
| Contrafold | [ FASTA input ] | [ sec struct ] | ...(((.(((((.((((......))))........)))))..)))... |
| Cylofold | [ FASTA input ] | [ sec struct ] | .......(((((.((((......))))........)))))........ |
| DAFS(seed) | [ FASTA input ] | [ sec struct ] | ((((((..(.............................)...)))))) |
| DAFS(20) | [ FASTA input ] | [ sec struct ] | ..((....(((.........................))).....)).. |
| DotKnot | [ FASTA input ] | [ sec struct ] | .......(((((.((((......)))).....[[[)))))...]]].. |
| Fold | [ FASTA input ] | [ sec struct ] | ...(((.(((((.((((......))))........)))))..)))... |
| HotKnots | [ FASTA input ] | [ sec struct ] | ...(((.(((((.((((......))))........)))))..)))... |
| IPknot | [ FASTA input ] | [ sec struct ] | ...(((.(((((.((((......))))........)))))..)))... |
| MCFold (ext) | [ FASTA input ] | [ sec struct ] | ((((((((((((..((((....))))(((...))))))).)))))))) |
| MXScarna(seed) | [ FASTA input ] | [ sec struct ] | .(((((..((((.((((......))))........)))))...)))). |
| MXScarna(20) | [ FASTA input ] | [ sec struct ] | .((((..(((((.((((......))))........)))))...)))). |
| Mastr(seed) | [ FASTA input ] | [ sec struct ] | .(((....(((..(((........))).........))).....))). |
| Mastr(20) | [ FASTA input ] | [ sec struct ] | .((((...((((.((((......))))........))))....)))). |
| MaxExpect | [ FASTA input ] | [ sec struct ] | ...(((.(((((.((((......))))........)))))..)))... |
| McQFold | [ FASTA input ] | [ sec struct ] | ...(((.(((((.((((......))))........)))))..)))... |
| Multilign(seed) | [ FASTA input ] | [ sec struct ] | ................................................ |
| Multilign(20) | [ FASTA input ] | [ sec struct ] | ................................................ |
| Murlet(seed) | [ FASTA input ] | [ sec struct ] | ................................................ |
| Murlet(20) | [ FASTA input ] | [ sec struct ] | ................................................ |
| PETfold_2.0(seed) | [ FASTA input ] | [ sec struct ] | ...((...((...((..........))..........))....))... |
| PETfold_2.0(20) | [ FASTA input ] | [ sec struct ] | ...........(....)......((((.........)))...)..... |
| PETfold_pre2.0(seed) | [ FASTA input ] | [ sec struct ] | ...((...((.(.((..........))....).....))....))... |
| PETfold_pre2.0(20) | [ FASTA input ] | [ sec struct ] | ........((.(....)....................))......... |
| PPfold(seed) | [ FASTA input ] | [ sec struct ] | ........(....((..........))...........)......... |
| PPfold(20) | [ FASTA input ] | [ sec struct ] | ...........(....)............................... |
| Pknots | [ FASTA input ] | [ sec struct ] | .......(((((.((((......)))).....[[[)))))...]]].. |
| PknotsRG | [ FASTA input ] | [ sec struct ] | .......(((((.((((......)))).....[[[)))))...]]].. |
| ProbKnot | [ FASTA input ] | [ sec struct ] | ...(((.(((((.((((......))))........)))))..)))... |
| RDfolder | [ FASTA input ] | [ sec struct ] | ...(((.(((((.((((......))))........)))))..)))... |
| RNASLOpt | [ FASTA input ] | [ sec struct ] | .......(((((.((((......))))........)))))........ |
| RNASampler(seed) | [ FASTA input ] | [ sec struct ] | ................................................ |
| RNASampler(20) | [ FASTA input ] | [ sec struct ] | .......(((((.......................)))))........ |
| RNAalifold(seed) | [ FASTA input ] | [ sec struct ] | ................................................ |
| RNAalifold(20) | [ FASTA input ] | [ sec struct ] | ................................................ |
| RNAfold | [ FASTA input ] | [ sec struct ] | ...(((.(((((.((((......))))........)))))..)))... |
| RNAshapes | [ FASTA input ] | [ sec struct ] | ...(((.(((((.((((......))))........)))))..)))... |
| RNAsubopt | [ FASTA input ] | [ sec struct ] | ...(((.(((((.((((......))))........)))))..)))... |
| RNAwolf (ext) | [ FASTA input ] | [ sec struct ] | ..(((((((((((((((......))))).......)))))).))).). |
| RSpredict(seed) | [ FASTA input ] | [ sec struct ] | ((.((...((((.((((......))))........))))....)).)) |
| RSpredict(20) | [ FASTA input ] | [ sec struct ] | ((.(((..((((.((((......))))........))))...))).)) |
| Sfold | [ FASTA input ] | [ sec struct ] | ...(((.(((((.((((......))))........)))))..)))... |
| TurboFold(seed) | [ FASTA input ] | [ sec struct ] | ...(((.(((((.((((......))))........)))))..)))... |
| TurboFold(20) | [ FASTA input ] | [ sec struct ] | ...(((.(((((.((((......))))........)))))..)))... |
| UNAFold | [ FASTA input ] | [ sec struct ] | ...(((.(((((.((((......))))........)))))..)))... |
| Vsfold4 | [ FASTA input ] | [ sec struct ] | .......(((((.((((......))))........)))))........ |
| Vsfold5 | [ FASTA input ] | [ sec struct ] | .......(((((.((((......))))........)))))........ |