RNA Secondary Structure Atlas - RNASTRAND - RFA_00659

RNA: RFA_00659
Rfam family: Hammerhead_1

			AUCCAACUGACGAGUGCCCAAUAGGAGGAAACGCGCGUCAAACUGCAU
Reference structure (ext)		[ sec struct ]	((((((.......((((......))))...(((())))....))))))
Afold	[ FASTA input ]	[ sec struct ]	((.((..(((((.(((.((.......))...))).)))))...)).))
Alterna	[ FASTA input ]	[ sec struct ]	((.((..(((((.(((((........))...))).)))))...)).))
CMfinder(seed)	[ FASTA input ]	[ sec struct ]	........((((..(.(......).).........)))).........
CRWrnafold	[ FASTA input ]	[ sec struct ]	...((..((((..((((...............))))))))...))...
Carnac(seed)	[ FASTA input ]	[ sec struct ]	.............((((...............))))............
CentroidAlifold(seed)	[ FASTA input ]	[ sec struct ]	((((((....................................))))))
CentroidFold	[ FASTA input ]	[ sec struct ]	.......(((((.(((.((.......))...))).)))))........
CentroidHomfold‑LAST	[ FASTA input ]	[ sec struct ]	((.((..(((((..(..........).........)))))...)).))
ContextFold	[ FASTA input ]	[ sec struct ]	((.((...........(((....)).)...((....)).....)).))
Contrafold	[ FASTA input ]	[ sec struct ]	.......(((((.(((.((.......))...))).)))))........
Cylofold	[ FASTA input ]	[ sec struct ]	.(((...{{{{(.{{{{......))).........)}}}}....}}}}
DAFS(seed)	[ FASTA input ]	[ sec struct ]	((((((..(.............................)...))))))
DotKnot	[ FASTA input ]	[ sec struct ]	.(((...[[[[[.[[[.......))).....]]].]]]]]........
Fold	[ FASTA input ]	[ sec struct ]	.......(((((.(((.((.......))...))).)))))........
HotKnots	[ FASTA input ]	[ sec struct ]	.......(((((.(((.((.......))...))).)))))........
IPknot	[ FASTA input ]	[ sec struct ]	.......(((((.(((.((.......))...))).)))))........
MCFold (ext)	[ FASTA input ]	[ sec struct ]	((((((((((((((((..)))).(((((..)))))))))))).)))))
MXScarna(seed)	[ FASTA input ]	[ sec struct ]	.(((((..((((.((.((.....))))........)))))...)))).
Mastr(seed)	[ FASTA input ]	[ sec struct ]	.(((....(((....((......))...........))).....))).
MaxExpect	[ FASTA input ]	[ sec struct ]	.......(((((.(((.((.......))...))).)))))........
McQFold	[ FASTA input ]	[ sec struct ]	.......(((((.......................)))))........
Murlet(seed)	[ FASTA input ]	[ sec struct ]	................................................
PETfold_2.0(seed)	[ FASTA input ]	[ sec struct ]	..(((...((...((..........))..........))....)))..
PETfold_pre2.0(seed)	[ FASTA input ]	[ sec struct ]	...((...((.(.((..........))....).....))....))...
Pknots	[ FASTA input ]	[ sec struct ]	.......((((..((((((....)).(....)))))))))........
PknotsRG	[ FASTA input ]	[ sec struct ]	.......(((((.....((....)).......[[[)))))...]]]..
ProbKnot	[ FASTA input ]	[ sec struct ]	.......(((((.(((...............))).)))))........
RDfolder	[ FASTA input ]	[ sec struct ]	.......(((((.(((...............))).)))))........
RNASLOpt	[ FASTA input ]	[ sec struct ]	.......(((((.......................)))))........
RNASampler(seed)	[ FASTA input ]	[ sec struct ]	................................................
RNAalifold(seed)	[ FASTA input ]	[ sec struct ]	................................................
RNAfold	[ FASTA input ]	[ sec struct ]	.......(((((.(((.((.......))...))).)))))........
RNAshapes	[ FASTA input ]	[ sec struct ]	.......(((((.(((.((.......))...))).)))))........
RNAsubopt	[ FASTA input ]	[ sec struct ]	.......((((..((((((....)).(....)))))))))........
RNAwolf (ext)	[ FASTA input ]	[ sec struct ]	..(((((((((((((((((.......)).).))))))))).)))).).
RSpredict(seed)	[ FASTA input ]	[ sec struct ]	((.((...((((..(.(.........).)......))))....)).))
Sfold	[ FASTA input ]	[ sec struct ]	.......(((((.(((...............))).)))))........
UNAFold	[ FASTA input ]	[ sec struct ]	.......(((((.(((.((.......))...))).)))))........
Vsfold4	[ FASTA input ]	[ sec struct ]	.......((((..((((...............))))))))........
Vsfold5	[ FASTA input ]	[ sec struct ]	.......(((((.......................)))))........

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