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RNA Secondary Structure Atlas - RNASTRAND - RFA_00664
RNA: RFA_00664
Rfam family:
Hammerhead_1
| CCCUGGCUGACGAGUCCCAAACAGGACGAAACGCGCGUCCUGGAU | |||
| Reference structure (ext) | [ sec struct ] | ((((((.......((((......))))...(((()))).)))))) | |
| Afold | [ FASTA input ] | [ sec struct ] | (...((((....)))).....(((((((.......)))))))..) |
| Alterna | [ FASTA input ] | [ sec struct ] | .............((((.....((((((.......)))))))))) |
| CMfinder(seed) | [ FASTA input ] | [ sec struct ] | ........((((.((((......))))........))))...... |
| CMfinder(20) | [ FASTA input ] | [ sec struct ] | .......................(((((.......)))))..... |
| CRWrnafold | [ FASTA input ] | [ sec struct ] | ....((((....)))).....(((((((.......)))))))... |
| Carnac(seed) | [ FASTA input ] | [ sec struct ] | ............................................. |
| Carnac(20) | [ FASTA input ] | [ sec struct ] | ............................................. |
| CentroidAlifold(seed) | [ FASTA input ] | [ sec struct ] | ((((((.................................)))))) |
| CentroidAlifold(20) | [ FASTA input ] | [ sec struct ] | .(((((..................((...........))))))). |
| CentroidFold | [ FASTA input ] | [ sec struct ] | .....(((....)))......(((((((.......)))))))... |
| CentroidHomfold‑LAST | [ FASTA input ] | [ sec struct ] | .....................(((((((.......)))))))... |
| ContextFold | [ FASTA input ] | [ sec struct ] | ....((((....)))).....(((((((.......)))))))... |
| Contrafold | [ FASTA input ] | [ sec struct ] | ....((((....)))).....(((((((.......)))))))... |
| Cylofold | [ FASTA input ] | [ sec struct ] | ....((((....)))).....(((((((.......)))))))... |
| DAFS(seed) | [ FASTA input ] | [ sec struct ] | ((((((..(.............................))))))) |
| DAFS(20) | [ FASTA input ] | [ sec struct ] | ..............(((......)))................... |
| DotKnot | [ FASTA input ] | [ sec struct ] | ...(((.......[[[)))..(((((((.......)))))))]]] |
| Fold | [ FASTA input ] | [ sec struct ] | ....((((....)))).....(((((((.......)))))))... |
| HotKnots | [ FASTA input ] | [ sec struct ] | ....((((....)))).....(((((((.......)))))))... |
| IPknot | [ FASTA input ] | [ sec struct ] | ....((((....)))).....(((((((.......)))))))... |
| MCFold (ext) | [ FASTA input ] | [ sec struct ] | ...(((..(((..))))))((((((((((.....))))))))).) |
| MXScarna(seed) | [ FASTA input ] | [ sec struct ] | .(((((..((((.((((......))))........))))))))). |
| MXScarna(20) | [ FASTA input ] | [ sec struct ] | .((((..(((((.((((......))))........))))))))). |
| Mastr(seed) | [ FASTA input ] | [ sec struct ] | ...(.....................................)... |
| Mastr(20) | [ FASTA input ] | [ sec struct ] | .((((...((((.((((......))))........)))).)))). |
| MaxExpect | [ FASTA input ] | [ sec struct ] | ....((((....)))).....(((((((.......)))))))... |
| McQFold | [ FASTA input ] | [ sec struct ] | ....((((....)))).....(((((((.......)))))))... |
| Multilign(seed) | [ FASTA input ] | [ sec struct ] | ............................................. |
| Multilign(20) | [ FASTA input ] | [ sec struct ] | ............................................. |
| Murlet(seed) | [ FASTA input ] | [ sec struct ] | ............................................. |
| Murlet(20) | [ FASTA input ] | [ sec struct ] | ............................................. |
| NanoFolder | [ FASTA input ] | [ sec struct ] | ....((((..[[)))).....(((((((.....]])))))))... |
| PETfold_2.0(seed) | [ FASTA input ] | [ sec struct ] | ..(((...((...((..........))..........)).))).. |
| PETfold_2.0(20) | [ FASTA input ] | [ sec struct ] | ...........(....)......((((.........))))..... |
| PETfold_pre2.0(seed) | [ FASTA input ] | [ sec struct ] | ...((...((.(.((..........))....).....)).))... |
| PETfold_pre2.0(20) | [ FASTA input ] | [ sec struct ] | ...........(....)......(((...........)))..... |
| PPfold(seed) | [ FASTA input ] | [ sec struct ] | ........(....((..........))...........)...... |
| PPfold(20) | [ FASTA input ] | [ sec struct ] | ...........(....)............................ |
| Pknots | [ FASTA input ] | [ sec struct ] | ....((((....)))).....(((((((.......)))))))... |
| PknotsRG | [ FASTA input ] | [ sec struct ] | ....((((....)))).....(((((((.......)))))))... |
| ProbKnot | [ FASTA input ] | [ sec struct ] | ....((((....)))).....(((((((.......)))))))... |
| RDfolder | [ FASTA input ] | [ sec struct ] | ...(((..........)))..(((((((.......)))))))... |
| RNASLOpt | [ FASTA input ] | [ sec struct ] | ....((((....)))).....(((((((.......)))))))... |
| RNASampler(seed) | [ FASTA input ] | [ sec struct ] | ............................................. |
| RNASampler(20) | [ FASTA input ] | [ sec struct ] | ............................................. |
| RNAalifold(seed) | [ FASTA input ] | [ sec struct ] | ............................................. |
| RNAalifold(20) | [ FASTA input ] | [ sec struct ] | ............................................. |
| RNAfold | [ FASTA input ] | [ sec struct ] | ....((((....)))).....(((((((.......)))))))... |
| RNAshapes | [ FASTA input ] | [ sec struct ] | ....((((....)))).....(((((((.......)))))))... |
| RNAsubopt | [ FASTA input ] | [ sec struct ] | ....((((....)))).....(((((((.......)))))))... |
| RNAwolf (ext) | [ FASTA input ] | [ sec struct ] | .(.(((..(((..)))))))(((((((((....).)))))))).. |
| RSpredict(seed) | [ FASTA input ] | [ sec struct ] | ..(((...((((.((((......))))........)))).))).. |
| RSpredict(20) | [ FASTA input ] | [ sec struct ] | ..((((..((((.((((......))))........)))))))).. |
| Sfold | [ FASTA input ] | [ sec struct ] | ....((((....)))).....(((((((.......)))))))... |
| TurboFold(seed) | [ FASTA input ] | [ sec struct ] | ....((((....)))).....(((((((.......)))))))... |
| TurboFold(20) | [ FASTA input ] | [ sec struct ] | .....(((....)))......(((((((.......)))))))... |
| UNAFold | [ FASTA input ] | [ sec struct ] | ....((((....)))).....(((((((.......)))))))... |
| Vsfold4 | [ FASTA input ] | [ sec struct ] | ....((((....)))).....(((((((.......)))))))... |
| Vsfold5 | [ FASTA input ] | [ sec struct ] | ....((((....)))).....(((((((.......)))))))... |