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RNA Secondary Structure Atlas - RNASTRAND - RFA_00667
RNA: RFA_00667
Rfam family:
Hammerhead_1
| AUCUUUCUGACGAGUUUCAAAUAGGACGAAACGCGUGUCAUGGAU | |||
| Reference structure (ext) | [ sec struct ] | ((((((.......((((......))))...(((()))).)))))) | |
| Afold | [ FASTA input ] | [ sec struct ] | ((((.....(((.(((((.........))))).))).....)))) |
| Alterna | [ FASTA input ] | [ sec struct ] | ((((...(((((.(((((.........)))))...))))).)))) |
| CMfinder(seed) | [ FASTA input ] | [ sec struct ] | ........((((.((((......))))........))))...... |
| CMfinder(20) | [ FASTA input ] | [ sec struct ] | ........((((.((((......))))........))))...... |
| CRWrnafold | [ FASTA input ] | [ sec struct ] | ((((...((((..(((((.........)))))....)))).)))) |
| Carnac(seed) | [ FASTA input ] | [ sec struct ] | .............(((((.........)))))............. |
| Carnac(20) | [ FASTA input ] | [ sec struct ] | ............................................. |
| CentroidAlifold(seed) | [ FASTA input ] | [ sec struct ] | ((((((.................................)))))) |
| CentroidAlifold(20) | [ FASTA input ] | [ sec struct ] | .(((((..................(((.........)))))))). |
| CentroidFold | [ FASTA input ] | [ sec struct ] | ((((...(((((.(((((.........))))).))..))).)))) |
| CentroidHomfold‑LAST | [ FASTA input ] | [ sec struct ] | ((((....((((.(((((.........)))))...))))..)))) |
| ContextFold | [ FASTA input ] | [ sec struct ] | ((((...(((((.((.................)).))))).)))) |
| Contrafold | [ FASTA input ] | [ sec struct ] | ((((...(((((.(((((.........))))).))..))).)))) |
| Cylofold | [ FASTA input ] | [ sec struct ] | .......(((((.(((((.........)))))...)))))..... |
| DAFS(seed) | [ FASTA input ] | [ sec struct ] | ((((((..(.............................))))))) |
| DAFS(20) | [ FASTA input ] | [ sec struct ] | ............................................. |
| DotKnot | [ FASTA input ] | [ sec struct ] | ((((...(((((.(((((.........)))))...))))).)))) |
| Fold | [ FASTA input ] | [ sec struct ] | ((((.....(((.(((((.........))))).))).....)))) |
| HotKnots | [ FASTA input ] | [ sec struct ] | ((((.....(((.(((((.........))))).))).....)))) |
| IPknot | [ FASTA input ] | [ sec struct ] | ((((...(((((.(((((.........)))))...))))).)))) |
| MCFold (ext) | [ FASTA input ] | [ sec struct ] | (((((((((((((((((((((...))))))))))))))))))))) |
| MXScarna(seed) | [ FASTA input ] | [ sec struct ] | .(((((..((((.((((......))))........))))))))). |
| MXScarna(20) | [ FASTA input ] | [ sec struct ] | .((((..(((((.((((......))))........))))))))). |
| Mastr(seed) | [ FASTA input ] | [ sec struct ] | ........................((...........))...... |
| Mastr(20) | [ FASTA input ] | [ sec struct ] | .((((...((((.(((........)))........)))).)))). |
| MaxExpect | [ FASTA input ] | [ sec struct ] | .(((.....(((.(((((.........))))).))).....))). |
| McQFold | [ FASTA input ] | [ sec struct ] | .......(((((.(((((.........)))))...)))))..... |
| Multilign(20) | [ FASTA input ] | [ sec struct ] | ............................................. |
| Murlet(seed) | [ FASTA input ] | [ sec struct ] | ............................................. |
| Murlet(20) | [ FASTA input ] | [ sec struct ] | ............................................. |
| PETfold_2.0(seed) | [ FASTA input ] | [ sec struct ] | ..(((...((...((..........))..........)).))).. |
| PETfold_2.0(20) | [ FASTA input ] | [ sec struct ] | ...........(....)......((((.........))))..... |
| PETfold_pre2.0(seed) | [ FASTA input ] | [ sec struct ] | ...((...((.(.((..........))....).....)).))... |
| PETfold_pre2.0(20) | [ FASTA input ] | [ sec struct ] | ...........(....)......((((.........))))..... |
| PPfold(20) | [ FASTA input ] | [ sec struct ] | ...........(....)............................ |
| Pknots | [ FASTA input ] | [ sec struct ] | ....((((((((.(((((.........)))))...))))).))). |
| PknotsRG | [ FASTA input ] | [ sec struct ] | ((((...(((((.(((((.........)))))...))))).)))) |
| ProbKnot | [ FASTA input ] | [ sec struct ] | ((((.....(((.(((((.........))))).))).....)))) |
| RDfolder | [ FASTA input ] | [ sec struct ] | .........(((.(((((.........))))).)))......... |
| RNASLOpt | [ FASTA input ] | [ sec struct ] | ((((...(((((.(((((.........)))))...))))).)))) |
| RNASampler(seed) | [ FASTA input ] | [ sec struct ] | .............((((......)))).................. |
| RNASampler(20) | [ FASTA input ] | [ sec struct ] | .......(((((.......................)))))..... |
| RNAalifold(seed) | [ FASTA input ] | [ sec struct ] | ............................................. |
| RNAalifold(20) | [ FASTA input ] | [ sec struct ] | ............................................. |
| RNAfold | [ FASTA input ] | [ sec struct ] | ((((...(((((.(((((.........)))))...))))).)))) |
| RNAshapes | [ FASTA input ] | [ sec struct ] | ((((...(((((.(((((.........)))))...))))).)))) |
| RNAsubopt | [ FASTA input ] | [ sec struct ] | ((((...(((((.(((((.........)))))...))))).)))) |
| RNAwolf (ext) | [ FASTA input ] | [ sec struct ] | ((((..((((((((((((.........)))))..))))))))))) |
| RSpredict(seed) | [ FASTA input ] | [ sec struct ] | ((((....((((.((((......))))........))))..)))) |
| RSpredict(20) | [ FASTA input ] | [ sec struct ] | ((((....((((.((((......))))........))))..)))) |
| Sfold | [ FASTA input ] | [ sec struct ] | .(((...(((((.(((((.........))))).)..)))).))). |
| TurboFold(20) | [ FASTA input ] | [ sec struct ] | .(((...(((((.((.................)).))))).))). |
| UNAFold | [ FASTA input ] | [ sec struct ] | ((((.....(((.(((((.........))))).))).....)))) |
| Vsfold4 | [ FASTA input ] | [ sec struct ] | .(((...(((((.(((((.........)))))...))))).))). |
| Vsfold5 | [ FASTA input ] | [ sec struct ] | .((((((((....[[[[[...))))).]]]]].........))). |