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RNA Secondary Structure Atlas - RNASTRAND - RFA_00668
RNA: RFA_00668
Rfam family:
Hammerhead_1
| AUCCAGCUGACGAGUGCCAAAUAGGACGAAAUGUGCAUCCUGGAU | |||
| Reference structure (ext) | [ sec struct ] | ((((((.......((((......))))...(((()))).)))))) | |
| Afold | [ FASTA input ] | [ sec struct ] | ((((((.(((((..((((.....)).))...))).))..)))))) |
| Alterna | [ FASTA input ] | [ sec struct ] | ((((((.................(...........)...)))))) |
| CMfinder(seed) | [ FASTA input ] | [ sec struct ] | ........((.(.((.(......).))........).))...... |
| CMfinder(20) | [ FASTA input ] | [ sec struct ] | ........((.(.((.(......).))........).))...... |
| CRWrnafold | [ FASTA input ] | [ sec struct ] | ((((((.......((((((............)).)))).)))))) |
| Carnac(seed) | [ FASTA input ] | [ sec struct ] | ((((((.......((((.................)))).)))))) |
| Carnac(20) | [ FASTA input ] | [ sec struct ] | ............................................. |
| CentroidAlifold(seed) | [ FASTA input ] | [ sec struct ] | ((((((.................................)))))) |
| CentroidAlifold(20) | [ FASTA input ] | [ sec struct ] | .((((..................(((((.......))))))))). |
| CentroidFold | [ FASTA input ] | [ sec struct ] | ((((((.................................)))))) |
| CentroidHomfold‑LAST | [ FASTA input ] | [ sec struct ] | (((((..................(((.(.......).)))))))) |
| ContextFold | [ FASTA input ] | [ sec struct ] | ((((((..........((.....)).....((....)).)))))) |
| Contrafold | [ FASTA input ] | [ sec struct ] | ((((((........(((.................)))..)))))) |
| Cylofold | [ FASTA input ] | [ sec struct ] | ((((((.......((((.................)))).)))))) |
| DAFS(seed) | [ FASTA input ] | [ sec struct ] | ((((((..(.............................))))))) |
| DAFS(20) | [ FASTA input ] | [ sec struct ] | ...(.....................................)... |
| DotKnot | [ FASTA input ] | [ sec struct ] | ((((((.................................)))))) |
| Fold | [ FASTA input ] | [ sec struct ] | ((((((.(((((..((((.....)).))...))).))..)))))) |
| HotKnots | [ FASTA input ] | [ sec struct ] | ((((((.(((((..((((.....)).))...))).))..)))))) |
| IPknot | [ FASTA input ] | [ sec struct ] | ((((((.................................)))))) |
| MCFold (ext) | [ FASTA input ] | [ sec struct ] | ((((((((((((..))))))))((((((((...)))))))))))) |
| MXScarna(seed) | [ FASTA input ] | [ sec struct ] | .(((((..((((.((((......))))........))))))))). |
| MXScarna(20) | [ FASTA input ] | [ sec struct ] | .((((..(((((.((((......))))........))))))))). |
| Mastr(seed) | [ FASTA input ] | [ sec struct ] | .((.....(((..(((........))).........)))...)). |
| Mastr(20) | [ FASTA input ] | [ sec struct ] | .((((...((((..(((......))).........)))).)))). |
| MaxExpect | [ FASTA input ] | [ sec struct ] | .(((((.((((...((((.....)).))....)).))..))))). |
| McQFold | [ FASTA input ] | [ sec struct ] | ((((((.......((((.................)))).)))))) |
| Multilign(20) | [ FASTA input ] | [ sec struct ] | ............................................. |
| Murlet(seed) | [ FASTA input ] | [ sec struct ] | ............................................. |
| Murlet(20) | [ FASTA input ] | [ sec struct ] | ............................................. |
| PETfold_2.0(seed) | [ FASTA input ] | [ sec struct ] | ..(((...((...((..........))..........)).))).. |
| PETfold_2.0(20) | [ FASTA input ] | [ sec struct ] | ........((.(....)....................))...... |
| PETfold_pre2.0(seed) | [ FASTA input ] | [ sec struct ] | ...((...((.(.((..........))....).....)).))... |
| PETfold_pre2.0(20) | [ FASTA input ] | [ sec struct ] | ...........(....)......(((...........)))..... |
| PPfold(20) | [ FASTA input ] | [ sec struct ] | ...........(....)............................ |
| Pknots | [ FASTA input ] | [ sec struct ] | ((((((((....))(((((............)).)))..)))))) |
| PknotsRG | [ FASTA input ] | [ sec struct ] | ((((((.(((((..((((.....)).))...))).))..)))))) |
| ProbKnot | [ FASTA input ] | [ sec struct ] | ((((((.(((((..((((.....)).))...))).))..)))))) |
| RDfolder | [ FASTA input ] | [ sec struct ] | ((((((.......((((...............))))...)))))) |
| RNASLOpt | [ FASTA input ] | [ sec struct ] | ((((((.......((((.................)))).)))))) |
| RNASampler(seed) | [ FASTA input ] | [ sec struct ] | ............................................. |
| RNASampler(20) | [ FASTA input ] | [ sec struct ] | ..((((.................................)))).. |
| RNAalifold(seed) | [ FASTA input ] | [ sec struct ] | ............................................. |
| RNAalifold(20) | [ FASTA input ] | [ sec struct ] | ............................................. |
| RNAfold | [ FASTA input ] | [ sec struct ] | ((((((.(((((..((((.....)).))...))).))..)))))) |
| RNAshapes | [ FASTA input ] | [ sec struct ] | ((((((.(((((..((((.....)).))...))).))..)))))) |
| RNAsubopt | [ FASTA input ] | [ sec struct ] | ((((((.(((((..((((.....)).))...))).))..)))))) |
| RNAwolf (ext) | [ FASTA input ] | [ sec struct ] | (((((((((.(((.(...............).)))))).)))))) |
| RSpredict(seed) | [ FASTA input ] | [ sec struct ] | (((((......(.((.(......).))........)....))))) |
| RSpredict(20) | [ FASTA input ] | [ sec struct ] | (((((......(..(((.................))).).))))) |
| Sfold | [ FASTA input ] | [ sec struct ] | ((((((.(((((..((((.....)).))...))).))..)))))) |
| TurboFold(20) | [ FASTA input ] | [ sec struct ] | .(((((.......((.((.....))))............))))). |
| UNAFold | [ FASTA input ] | [ sec struct ] | ((((((.(((((..((((.....)).))...))).))..)))))) |
| Vsfold4 | [ FASTA input ] | [ sec struct ] | .(((((.......((((((............)).)))).))))). |
| Vsfold5 | [ FASTA input ] | [ sec struct ] | .(((((.......((((((............)).)))).))))). |