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RNA Secondary Structure Atlas - RNASTRAND - RFA_00672
RNA: RFA_00672
Rfam family:
Hammerhead_1
| AUCCAGCUCACGAGUCCCAAAUAGGACGAAACGCGUCCUCCAU | |||
| Reference structure (ext) | [ sec struct ] | ((((((.......((((......))))...((())).)))))) | |
| Afold | [ FASTA input ] | [ sec struct ] | ((...(((....))).......((((((.....))))))..)) |
| Alterna | [ FASTA input ] | [ sec struct ] | .....(((....))).......((((((.....)))))).... |
| CMfinder(seed) | [ FASTA input ] | [ sec struct ] | .........(((.((((......))))......)))....... |
| CMfinder(20) | [ FASTA input ] | [ sec struct ] | .......................(((((.....)))))..... |
| CRWrnafold | [ FASTA input ] | [ sec struct ] | ......................((((((.....)))))).... |
| Carnac(seed) | [ FASTA input ] | [ sec struct ] | ........................................... |
| Carnac(20) | [ FASTA input ] | [ sec struct ] | ........................................... |
| CentroidAlifold(seed) | [ FASTA input ] | [ sec struct ] | ((((((........((........))...........)))))) |
| CentroidAlifold(20) | [ FASTA input ] | [ sec struct ] | ..(((..................(((((.....)))))))).. |
| CentroidFold | [ FASTA input ] | [ sec struct ] | ......................((((((.....)))))).... |
| CentroidHomfold‑LAST | [ FASTA input ] | [ sec struct ] | .(..(........((((......))))...........)..). |
| ContextFold | [ FASTA input ] | [ sec struct ] | ((..................))((((((.....)))))).... |
| Contrafold | [ FASTA input ] | [ sec struct ] | ......................((((((.....)))))).... |
| Cylofold | [ FASTA input ] | [ sec struct ] | .....(((....))).......((((((.....)))))).... |
| DAFS(seed) | [ FASTA input ] | [ sec struct ] | .(((((........(((......)))...........))))). |
| DAFS(20) | [ FASTA input ] | [ sec struct ] | .............((((......))))................ |
| DotKnot | [ FASTA input ] | [ sec struct ] | .....(((....))).......((((((.....)))))).... |
| Fold | [ FASTA input ] | [ sec struct ] | ......................((((((.....)))))).... |
| HotKnots | [ FASTA input ] | [ sec struct ] | .....(((....))).......((((((.....)))))).... |
| IPknot | [ FASTA input ] | [ sec struct ] | ......................((((((.....)))))).... |
| MCFold (ext) | [ FASTA input ] | [ sec struct ] | (((((((((((((((((((..))))))...))))))))))))) |
| MXScarna(seed) | [ FASTA input ] | [ sec struct ] | .(((((..((((.((((......))))......))))))))). |
| MXScarna(20) | [ FASTA input ] | [ sec struct ] | .(((((..((((.((((......))))......))))))))). |
| Mastr(seed) | [ FASTA input ] | [ sec struct ] | ...............(........).................. |
| Mastr(20) | [ FASTA input ] | [ sec struct ] | .((((..................(((((.....))))))))). |
| MaxExpect | [ FASTA input ] | [ sec struct ] | ......................((((((.....)))))).... |
| McQFold | [ FASTA input ] | [ sec struct ] | .....((((..)))).......((((((.....)))))).... |
| Multilign(20) | [ FASTA input ] | [ sec struct ] | ........................................... |
| Murlet(seed) | [ FASTA input ] | [ sec struct ] | ........................................... |
| Murlet(20) | [ FASTA input ] | [ sec struct ] | .............((((......))))................ |
| PETfold_2.0(seed) | [ FASTA input ] | [ sec struct ] | ...((...((...((..........))........)).))... |
| PETfold_2.0(20) | [ FASTA input ] | [ sec struct ] | ...........(....)......(((((.....)))))..... |
| PETfold_pre2.0(seed) | [ FASTA input ] | [ sec struct ] | ...((...((.(.((..........))....)...)).))... |
| PETfold_pre2.0(20) | [ FASTA input ] | [ sec struct ] | ...........(....)......((((.......))))..... |
| PPfold(20) | [ FASTA input ] | [ sec struct ] | ...........(....)......(((.........)))..... |
| Pknots | [ FASTA input ] | [ sec struct ] | ......................((((((.....)))))).... |
| PknotsRG | [ FASTA input ] | [ sec struct ] | .....(((....))).......((((((.....)))))).... |
| ProbKnot | [ FASTA input ] | [ sec struct ] | .....(((....))).......((((((.....)))))).... |
| RDfolder | [ FASTA input ] | [ sec struct ] | ......................((((((.....)))))).... |
| RNASLOpt | [ FASTA input ] | [ sec struct ] | ......................((((((.....)))))).... |
| RNASampler(seed) | [ FASTA input ] | [ sec struct ] | ........................................... |
| RNASampler(20) | [ FASTA input ] | [ sec struct ] | .........(((.((((......))))......)))....... |
| RNAalifold(seed) | [ FASTA input ] | [ sec struct ] | ........................................... |
| RNAalifold(20) | [ FASTA input ] | [ sec struct ] | .............((((......))))................ |
| RNAfold | [ FASTA input ] | [ sec struct ] | .....(((....))).......((((((.....)))))).... |
| RNAshapes | [ FASTA input ] | [ sec struct ] | .....(((....))).......((((((.....)))))).... |
| RNAsubopt | [ FASTA input ] | [ sec struct ] | .....(((....))).......((((((.....)))))).... |
| RNAwolf (ext) | [ FASTA input ] | [ sec struct ] | .....((((..))))((..)).(((((.(....)))))).... |
| RSpredict(seed) | [ FASTA input ] | [ sec struct ] | ((..(....(((.((((......))))......)))..)..)) |
| RSpredict(20) | [ FASTA input ] | [ sec struct ] | ((..(....(((.((((......))))......)))..)..)) |
| Sfold | [ FASTA input ] | [ sec struct ] | ......(......)........((((((.....)))))).... |
| TurboFold(20) | [ FASTA input ] | [ sec struct ] | ......................((((((.....)))))).... |
| UNAFold | [ FASTA input ] | [ sec struct ] | .....(((....))).......((((((.....)))))).... |
| Vsfold4 | [ FASTA input ] | [ sec struct ] | ......................((((((.....)))))).... |
| Vsfold5 | [ FASTA input ] | [ sec struct ] | ........................................... |