RNA Secondary Structure Atlas - RNASTRAND - RFA_00673

RNA: RFA_00673
Rfam family: Hammerhead_1

			AUCCAGCCGACGAGUCCCAAAUAAAACGAAACGCGCGUCAAAGUGGAU
Reference structure (ext)		[ sec struct ]	((((((.......((((......))))...(((())))....))))))
Afold	[ FASTA input ]	[ sec struct ]	(((((...((((.((.................)).))))....)))))
Alterna	[ FASTA input ]	[ sec struct ]	(((((...((((.((.................)).))))....)))))
CMfinder(seed)	[ FASTA input ]	[ sec struct ]	........((((.((..........))........)))).........
CMfinder(20)	[ FASTA input ]	[ sec struct ]	........((((.((..........))........)))).........
CRWrnafold	[ FASTA input ]	[ sec struct ]	(((((...((((.......................))))....)))))
Carnac(seed)	[ FASTA input ]	[ sec struct ]	(((((...((((.......................))))....)))))
Carnac(20)	[ FASTA input ]	[ sec struct ]	................................................
CentroidAlifold(seed)	[ FASTA input ]	[ sec struct ]	((((((....................................))))))
CentroidAlifold(20)	[ FASTA input ]	[ sec struct ]	((((((..((((.......................))))...))))))
CentroidFold	[ FASTA input ]	[ sec struct ]	(((((...((((.((.................)).))))....)))))
CentroidHomfold‑LAST	[ FASTA input ]	[ sec struct ]	(((((...((((.(...................).))))....)))))
ContextFold	[ FASTA input ]	[ sec struct ]	(((((........((..........))...((....)).....)))))
Contrafold	[ FASTA input ]	[ sec struct ]	(((((...((((.((.................)).))))....)))))
Cylofold	[ FASTA input ]	[ sec struct ]	(((((...((((.......................))))....)))))
DAFS(seed)	[ FASTA input ]	[ sec struct ]	((((((..(.............................)...))))))
DAFS(20)	[ FASTA input ]	[ sec struct ]	..(((...(((.........................)))....)))..
DotKnot	[ FASTA input ]	[ sec struct ]	.........................(((...[[[.)))....]]]...
Fold	[ FASTA input ]	[ sec struct ]	(((((...((((.((.................)).))))....)))))
HotKnots	[ FASTA input ]	[ sec struct ]	(((((...((((.((.................)).))))....)))))
IPknot	[ FASTA input ]	[ sec struct ]	(((((...((((.......................))))....)))))
MCFold (ext)	[ FASTA input ]	[ sec struct ]	(((((.(((((((((((((..)))))))))))).)(((..))))))))
MXScarna(seed)	[ FASTA input ]	[ sec struct ]	.(((((..((((.((((......))))........)))))...)))).
MXScarna(20)	[ FASTA input ]	[ sec struct ]	.((((..((((((((((......))))).......)))))...)))).
Mastr(seed)	[ FASTA input ]	[ sec struct ]	.(((........................................))).
Mastr(20)	[ FASTA input ]	[ sec struct ]	.((((...(......((......))(...........))....)))).
MaxExpect	[ FASTA input ]	[ sec struct ]	.((((...((((.((.................)).))))....)))).
McQFold	[ FASTA input ]	[ sec struct ]	(((((...((((.......................))))....)))))
Multilign(20)	[ FASTA input ]	[ sec struct ]	................................................
Murlet(seed)	[ FASTA input ]	[ sec struct ]	................................................
Murlet(20)	[ FASTA input ]	[ sec struct ]	................................................
PETfold_2.0(seed)	[ FASTA input ]	[ sec struct ]	..(((...((...((..........))..........))....)))..
PETfold_2.0(20)	[ FASTA input ]	[ sec struct ]	...........(....)......((((.........)))...).....
PETfold_pre2.0(seed)	[ FASTA input ]	[ sec struct ]	...((...((.(.((..........))....).....))....))...
PETfold_pre2.0(20)	[ FASTA input ]	[ sec struct ]	...........(....)......((((.........)))...).....
PPfold(20)	[ FASTA input ]	[ sec struct ]	...........(....)...............................
Pknots	[ FASTA input ]	[ sec struct ]	........((((....[[[.......((.....))))))....]]]..
PknotsRG	[ FASTA input ]	[ sec struct ]	(((((...((((.((.................)).))))....)))))
ProbKnot	[ FASTA input ]	[ sec struct ]	(((((.(.((((.......................))))...))))))
RDfolder	[ FASTA input ]	[ sec struct ]	.........................(((.......)))..........
RNASLOpt	[ FASTA input ]	[ sec struct ]	(((((...((((.......................))))....)))))
RNASampler(seed)	[ FASTA input ]	[ sec struct ]	................................................
RNASampler(20)	[ FASTA input ]	[ sec struct ]	........((((.......................)))).........
RNAalifold(seed)	[ FASTA input ]	[ sec struct ]	................................................
RNAalifold(20)	[ FASTA input ]	[ sec struct ]	................................................
RNAfold	[ FASTA input ]	[ sec struct ]	(((((...((((.((.................)).))))....)))))
RNAshapes	[ FASTA input ]	[ sec struct ]	(((((...((((.((.................)).))))....)))))
RNAsubopt	[ FASTA input ]	[ sec struct ]	(((((...((((.((.................)).))))....)))))
RNAwolf (ext)	[ FASTA input ]	[ sec struct ]	(((((..((((((((((...........).).))))))).)..)))))
RSpredict(seed)	[ FASTA input ]	[ sec struct ]	(((((...((((..((...........))......))))....)))))
RSpredict(20)	[ FASTA input ]	[ sec struct ]	(((((...((((.((..........))........))))....)))))
Sfold	[ FASTA input ]	[ sec struct ]	(((((...((((.((.................)).))))....)))))
TurboFold(20)	[ FASTA input ]	[ sec struct ]	.((((...((((.((.................)).))))....)))).
UNAFold	[ FASTA input ]	[ sec struct ]	(((((...((((.((.................)).))))....)))))
Vsfold4	[ FASTA input ]	[ sec struct ]	.((((...((((.......................))))....)))).
Vsfold5	[ FASTA input ]	[ sec struct ]	.((((...((((.......................))))....)))).

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