RNA Secondary Structure Atlas - RNASTRAND - RFA_00674

RNA: RFA_00674
Rfam family: Hammerhead_1

			AUUCAGCUGACGAGUCCCAAAUAGGACGAAGUGACGCGCGUCCUGGAU
Reference structure (ext)		[ sec struct ]	((((((.......((((......))))......(((()))).))))))
Afold	[ FASTA input ]	[ sec struct ]	((((((..((((.((((......))))...((...)).))))))))))
Alterna	[ FASTA input ]	[ sec struct ]	((((((..((((.((((......))))...........))))))))))
CMfinder(seed)	[ FASTA input ]	[ sec struct ]	........((((.((((......))))...........))))......
CMfinder(20)	[ FASTA input ]	[ sec struct ]	.......................(((((..........))))).....
CRWrnafold	[ FASTA input ]	[ sec struct ]	.............((((.....((((((..........))))))))))
Carnac(seed)	[ FASTA input ]	[ sec struct ]	................................................
Carnac(20)	[ FASTA input ]	[ sec struct ]	................................................
CentroidAlifold(seed)	[ FASTA input ]	[ sec struct ]	((((((...(..............................).))))))
CentroidAlifold(20)	[ FASTA input ]	[ sec struct ]	((((((..(((............................)))))))))
CentroidFold	[ FASTA input ]	[ sec struct ]	...(..................((((((..........)))))))...
CentroidHomfold‑LAST	[ FASTA input ]	[ sec struct ]	((((((..(((..((((......))))(..........))))))))))
ContextFold	[ FASTA input ]	[ sec struct ]	((((((.......((((......)))).....(((....)))))))))
Contrafold	[ FASTA input ]	[ sec struct ]	.(((((.......((((......)))).....((((()))))))))).
Cylofold	[ FASTA input ]	[ sec struct ]	((((.......))))......(((((((..........)))))))...
DAFS(seed)	[ FASTA input ]	[ sec struct ]	((((((..(................................)))))))
DAFS(20)	[ FASTA input ]	[ sec struct ]	..((((........(((......)))................))))..
DotKnot	[ FASTA input ]	[ sec struct ]	.............(((.....[[[[[[[....)))...]]]]]]]...
Fold	[ FASTA input ]	[ sec struct ]	.....(((....))).(((....(((((..((...)).))))))))..
HotKnots	[ FASTA input ]	[ sec struct ]	((((((..((((.((((......))))...(.....).))))))))))
IPknot	[ FASTA input ]	[ sec struct ]	((((((..((...(((..........[[....)))...]]))))))))
MCFold (ext)	[ FASTA input ]	[ sec struct ]	(((((((((.(..((((((..)))))))))).((((..))))))))))
MXScarna(seed)	[ FASTA input ]	[ sec struct ]	.(((((..((((.((((......))))...........))))))))).
MXScarna(20)	[ FASTA input ]	[ sec struct ]	.(((((..((((.((((......))))...........))))))))).
Mastr(seed)	[ FASTA input ]	[ sec struct ]	.((((......................................)))).
Mastr(20)	[ FASTA input ]	[ sec struct ]	.(((((.......(((........)))...............))))).
MaxExpect	[ FASTA input ]	[ sec struct ]	..((((........)........(((((..((...)).))))))))..
McQFold	[ FASTA input ]	[ sec struct ]	((((((.......((((......)))).....((((..))))))))))
Multilign(20)	[ FASTA input ]	[ sec struct ]	................................................
Murlet(seed)	[ FASTA input ]	[ sec struct ]	................................................
Murlet(20)	[ FASTA input ]	[ sec struct ]	................................................
NanoFolder	[ FASTA input ]	[ sec struct ]	((((((((..[[)))......{{{{{{{...)))]]..}}}}}}}.))
PETfold_2.0(seed)	[ FASTA input ]	[ sec struct ]	..((((..((...((..........)).............))))))..
PETfold_2.0(20)	[ FASTA input ]	[ sec struct ]	...........(....)......((((............)))).....
PETfold_pre2.0(seed)	[ FASTA input ]	[ sec struct ]	..(((...((...((..........)).............)).)))..
PETfold_pre2.0(20)	[ FASTA input ]	[ sec struct ]	...........(....)......(((..............))).....
PPfold(20)	[ FASTA input ]	[ sec struct ]	...........(....)......(((..............))).....
Pknots	[ FASTA input ]	[ sec struct ]	((((.......)))).(((....(((((..........))))))))..
PknotsRG	[ FASTA input ]	[ sec struct ]	((((((..((((.((((......))))...........))))))))))
ProbKnot	[ FASTA input ]	[ sec struct ]	(((((..................(((((..........))))))))))
RDfolder	[ FASTA input ]	[ sec struct ]	......................((((((..........))))))....
RNASLOpt	[ FASTA input ]	[ sec struct ]	((((((..((((.((((......))))...........))))))))))
RNASampler(seed)	[ FASTA input ]	[ sec struct ]	................................................
RNASampler(20)	[ FASTA input ]	[ sec struct ]	................................................
RNAalifold(seed)	[ FASTA input ]	[ sec struct ]	................................................
RNAalifold(20)	[ FASTA input ]	[ sec struct ]	................................................
RNAfold	[ FASTA input ]	[ sec struct ]	((((((..((((.((((......))))...(.....).))))))))))
RNAshapes	[ FASTA input ]	[ sec struct ]	((((((..((((.((((......))))...........))))))))))
RNAsubopt	[ FASTA input ]	[ sec struct ]	((((((..((((.((((......))))...(.....).))))))))))
RNAwolf (ext)	[ FASTA input ]	[ sec struct ]	((((((..(((((((((......)))))..........))))))))))
RSpredict(seed)	[ FASTA input ]	[ sec struct ]	(((((...((((.((((......))))...........)))).)))))
RSpredict(20)	[ FASTA input ]	[ sec struct ]	(((((...((((.((((......))))...........)))).)))))
Sfold	[ FASTA input ]	[ sec struct ]	.(((((..((((.((((......))))...(.....).))))))))).
TurboFold(20)	[ FASTA input ]	[ sec struct ]	.(((((..((((.((((......))))...........))))))))).
UNAFold	[ FASTA input ]	[ sec struct ]	((((((..((((.((((......))))...(.....).))))))))))
Vsfold4	[ FASTA input ]	[ sec struct ]	.(((.......))).......(((((((..........)))))))...
Vsfold5	[ FASTA input ]	[ sec struct ]	((((.......))))......(((((((..........)))))))...

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