 | ||||||||||||||
| ||||||||||||||
 | ||||||||||||||
RNA Secondary Structure Atlas - RNASTRAND - RFA_00677
RNA: RFA_00677
Rfam family:
Hammerhead_1
| AUCCAGCUGACGAGUCCUAAAUAGGGUGAAACGCGCGUCCUGGAU | |||
| Reference structure (ext) | [ sec struct ] | ((((((.......((((......))))...(((()))).)))))) | |
| Afold | [ FASTA input ] | [ sec struct ] | ((((((..((((.(((((.....)))......)).)))))))))) |
| Alterna | [ FASTA input ] | [ sec struct ] | ((((((..((((.(((((....))).......)).)))))))))) |
| CMfinder(seed) | [ FASTA input ] | [ sec struct ] | ........((((.((((......))))........))))...... |
| CMfinder(20) | [ FASTA input ] | [ sec struct ] | .......................(((((.......)))))..... |
| CRWrnafold | [ FASTA input ] | [ sec struct ] | ((((((..((((..((((....)))).........)))))))))) |
| Carnac(seed) | [ FASTA input ] | [ sec struct ] | ((((((..((((.......................)))))))))) |
| Carnac(20) | [ FASTA input ] | [ sec struct ] | ............................................. |
| CentroidAlifold(seed) | [ FASTA input ] | [ sec struct ] | ((((((.................................)))))) |
| CentroidAlifold(20) | [ FASTA input ] | [ sec struct ] | .(((((..................(((.........)))))))). |
| CentroidFold | [ FASTA input ] | [ sec struct ] | ((((((..((((.(((((....))).......)).)))))))))) |
| CentroidHomfold‑LAST | [ FASTA input ] | [ sec struct ] | ((((((..((((.(((((....)))))........)))))))))) |
| ContextFold | [ FASTA input ] | [ sec struct ] | ((((((.........((.......))....((....)).)))))) |
| Contrafold | [ FASTA input ] | [ sec struct ] | ((((((..((((.(((((....))).......)).)))))))))) |
| Cylofold | [ FASTA input ] | [ sec struct ] | ((((((..((((..((((....)))).........)))))))))) |
| DAFS(seed) | [ FASTA input ] | [ sec struct ] | ((((((..(.............................))))))) |
| DAFS(20) | [ FASTA input ] | [ sec struct ] | ...(.....................................)... |
| DotKnot | [ FASTA input ] | [ sec struct ] | ((((((..((((...(((....)))(((...))).)))))))))) |
| Fold | [ FASTA input ] | [ sec struct ] | ((((((..((((.(((((.....)))......)).)))))))))) |
| HotKnots | [ FASTA input ] | [ sec struct ] | ((((((..((((.(((((.....)))......)).)))))))))) |
| IPknot | [ FASTA input ] | [ sec struct ] | ((((((..((((...((.......)).........)))))))))) |
| MCFold (ext) | [ FASTA input ] | [ sec struct ] | ((((((..(((((((.(((..)))(((..)))))))))))))))) |
| MXScarna(seed) | [ FASTA input ] | [ sec struct ] | .(((((..((((.((((......))))........))))))))). |
| MXScarna(20) | [ FASTA input ] | [ sec struct ] | .(((((..((((.((((......))))........))))))))). |
| Mastr(seed) | [ FASTA input ] | [ sec struct ] | .(((.....................................))). |
| Mastr(20) | [ FASTA input ] | [ sec struct ] | .((((........((((......)))).............)))). |
| MaxExpect | [ FASTA input ] | [ sec struct ] | .(((((..((((.(((((.....)))......)).))))))))). |
| McQFold | [ FASTA input ] | [ sec struct ] | ((((((..((((.((((((..))))))........)))))))))) |
| Multilign(20) | [ FASTA input ] | [ sec struct ] | ............................................. |
| Murlet(seed) | [ FASTA input ] | [ sec struct ] | ............................................. |
| Murlet(20) | [ FASTA input ] | [ sec struct ] | ............................................. |
| NanoFolder | [ FASTA input ] | [ sec struct ] | (((((((([[[[))(((((..)))))((.....))]]]])))))) |
| PETfold_2.0(seed) | [ FASTA input ] | [ sec struct ] | ..(((...((...((..........))..........)).))).. |
| PETfold_2.0(20) | [ FASTA input ] | [ sec struct ] | ...........(....)......(((((.......)))))..... |
| PETfold_pre2.0(seed) | [ FASTA input ] | [ sec struct ] | ...((...((.(.((..........))....).....)).))... |
| PETfold_pre2.0(20) | [ FASTA input ] | [ sec struct ] | ...........(....)......(((((.......)))))..... |
| PPfold(20) | [ FASTA input ] | [ sec struct ] | ...........(....)............................ |
| Pknots | [ FASTA input ] | [ sec struct ] | ((((((((....)).(((....)))(((.....)))...)))))) |
| PknotsRG | [ FASTA input ] | [ sec struct ] | ((((((..((((.(((((.....)))......)).)))))))))) |
| ProbKnot | [ FASTA input ] | [ sec struct ] | ((((((..((((...(((.....))).........)))))))))) |
| RDfolder | [ FASTA input ] | [ sec struct ] | ......................((((((.......)))))).... |
| RNASLOpt | [ FASTA input ] | [ sec struct ] | ((((((..((((.(((((....)))))........)))))))))) |
| RNASampler(seed) | [ FASTA input ] | [ sec struct ] | ............................................. |
| RNASampler(20) | [ FASTA input ] | [ sec struct ] | ............................................. |
| RNAalifold(seed) | [ FASTA input ] | [ sec struct ] | ............................................. |
| RNAalifold(20) | [ FASTA input ] | [ sec struct ] | ............................................. |
| RNAfold | [ FASTA input ] | [ sec struct ] | ((((((..((((.(((((.....)))......)).)))))))))) |
| RNAshapes | [ FASTA input ] | [ sec struct ] | ((((((..((((.(((((.....)))......)).)))))))))) |
| RNAsubopt | [ FASTA input ] | [ sec struct ] | ((((((..((((...(((....)))(((...))).)))))))))) |
| RNAwolf (ext) | [ FASTA input ] | [ sec struct ] | ((((((..(((((((((((..)))).(..)..))))))))))))) |
| RSpredict(seed) | [ FASTA input ] | [ sec struct ] | (((((.....((.((((......))))........))...))))) |
| RSpredict(20) | [ FASTA input ] | [ sec struct ] | (((((...((((.((((......))))........)))).))))) |
| Sfold | [ FASTA input ] | [ sec struct ] | ((((((..((((.((((......)).......)).)))))))))) |
| TurboFold(20) | [ FASTA input ] | [ sec struct ] | .(((((..((((.((((......)).......)).))))))))). |
| UNAFold | [ FASTA input ] | [ sec struct ] | ((((((..((((.(((((.....)))......)).)))))))))) |
| Vsfold4 | [ FASTA input ] | [ sec struct ] | .(((((..((((..((((....)))).........))))))))). |
| Vsfold5 | [ FASTA input ] | [ sec struct ] | .(((((..((((..((((....)))).........))))))))). |