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RNA Secondary Structure Atlas - RNASTRAND - RFA_00678
RNA: RFA_00678
Rfam family:
Hammerhead_1
| AUCCAGCUGACGAGUCCCAAAUAGGACGAACGCACUUCCUAGAU | |||
| Reference structure (ext) | [ sec struct ] | ((((((.......((((......))))..(((()))).)))))) | |
| Afold | [ FASTA input ] | [ sec struct ] | (((.((.((.((.((((......))))...))))....)).))) |
| Alterna | [ FASTA input ] | [ sec struct ] | (((.((.......((((......))))...........)).))) |
| CMfinder(seed) | [ FASTA input ] | [ sec struct ] | ........((.(.((((......)))).......).))...... |
| CMfinder(20) | [ FASTA input ] | [ sec struct ] | .......................(((.(......).)))..... |
| CRWrnafold | [ FASTA input ] | [ sec struct ] | .....................(((((..........)))))... |
| Carnac(seed) | [ FASTA input ] | [ sec struct ] | ............................................ |
| Carnac(20) | [ FASTA input ] | [ sec struct ] | ............................................ |
| CentroidAlifold(seed) | [ FASTA input ] | [ sec struct ] | ((((((................................)))))) |
| CentroidAlifold(20) | [ FASTA input ] | [ sec struct ] | ((((((..(((........................))))))))) |
| CentroidFold | [ FASTA input ] | [ sec struct ] | .............((((......))))................. |
| CentroidHomfold‑LAST | [ FASTA input ] | [ sec struct ] | (((.((.......((((......))))...........)).))) |
| ContextFold | [ FASTA input ] | [ sec struct ] | (((.((.......((((......))))..(......).)).))) |
| Contrafold | [ FASTA input ] | [ sec struct ] | .............((((......))))................. |
| Cylofold | [ FASTA input ] | [ sec struct ] | .............((((......))))................. |
| DAFS(seed) | [ FASTA input ] | [ sec struct ] | ((((((..(............................))))))) |
| DAFS(20) | [ FASTA input ] | [ sec struct ] | ..((((..((..........................)))))).. |
| DotKnot | [ FASTA input ] | [ sec struct ] | .............((((......))))................. |
| Fold | [ FASTA input ] | [ sec struct ] | ....((.((.((.((((......))))...))))))........ |
| HotKnots | [ FASTA input ] | [ sec struct ] | .....((......((((......))))....))........... |
| IPknot | [ FASTA input ] | [ sec struct ] | .............((((......))))................. |
| MCFold (ext) | [ FASTA input ] | [ sec struct ] | (((((((((.(((((((((..))))))..)))))...))))))) |
| MXScarna(seed) | [ FASTA input ] | [ sec struct ] | .(((((..(((((((((......))))......)))))))))). |
| MXScarna(20) | [ FASTA input ] | [ sec struct ] | .((((..(((((.((((......)))).......))))))))). |
| Mastr(seed) | [ FASTA input ] | [ sec struct ] | ..((.....((..((..........))........))...)).. |
| Mastr(20) | [ FASTA input ] | [ sec struct ] | .((((...((((......................)))).)))). |
| MaxExpect | [ FASTA input ] | [ sec struct ] | ........(.(..((((......))))....))........... |
| McQFold | [ FASTA input ] | [ sec struct ] | .............((((......))))................. |
| Multilign(20) | [ FASTA input ] | [ sec struct ] | ............................................ |
| Murlet(seed) | [ FASTA input ] | [ sec struct ] | ............................................ |
| Murlet(20) | [ FASTA input ] | [ sec struct ] | ............................................ |
| PETfold_2.0(seed) | [ FASTA input ] | [ sec struct ] | ..(((...((...((..........)).........)).))).. |
| PETfold_2.0(20) | [ FASTA input ] | [ sec struct ] | ...........(....)......(((((......)))))..... |
| PETfold_pre2.0(seed) | [ FASTA input ] | [ sec struct ] | ...((...((.(.((..........))...).....)).))... |
| PETfold_pre2.0(20) | [ FASTA input ] | [ sec struct ] | ...........(....)......((((........))))..... |
| PPfold(20) | [ FASTA input ] | [ sec struct ] | ...........(....)........................... |
| Pknots | [ FASTA input ] | [ sec struct ] | .((.....))((.((((......))))[[[))...]]]...... |
| PknotsRG | [ FASTA input ] | [ sec struct ] | ....((.((.((.((((......))))...))))))........ |
| ProbKnot | [ FASTA input ] | [ sec struct ] | .......((.((.((((......))))...)))).......... |
| RDfolder | [ FASTA input ] | [ sec struct ] | .....................(((((..........)))))... |
| RNASLOpt | [ FASTA input ] | [ sec struct ] | .............((((......))))................. |
| RNASampler(seed) | [ FASTA input ] | [ sec struct ] | ............................................ |
| RNASampler(20) | [ FASTA input ] | [ sec struct ] | ......(((..............................))).. |
| RNAalifold(seed) | [ FASTA input ] | [ sec struct ] | ............................................ |
| RNAalifold(20) | [ FASTA input ] | [ sec struct ] | ............................................ |
| RNAfold | [ FASTA input ] | [ sec struct ] | .....((......((((......))))....))........... |
| RNAshapes | [ FASTA input ] | [ sec struct ] | .....((......((((......))))....))........... |
| RNAsubopt | [ FASTA input ] | [ sec struct ] | ....((.((.((.((((......))))...))))))........ |
| RNAwolf (ext) | [ FASTA input ] | [ sec struct ] | ....((.((((((((((......)))))))).))))((...)). |
| RSpredict(seed) | [ FASTA input ] | [ sec struct ] | (((.(......(.((..............))......).).))) |
| RSpredict(20) | [ FASTA input ] | [ sec struct ] | (((.((..((.(.((((......)))).......).)))).))) |
| Sfold | [ FASTA input ] | [ sec struct ] | .............((((......))))................. |
| TurboFold(20) | [ FASTA input ] | [ sec struct ] | .............((((......))))................. |
| UNAFold | [ FASTA input ] | [ sec struct ] | .....((......((((......))))....))........... |
| Vsfold4 | [ FASTA input ] | [ sec struct ] | ...........((((((......)))........)))....... |
| Vsfold5 | [ FASTA input ] | [ sec struct ] | ...........((((((......)))........)))....... |