RNA Secondary Structure Atlas - RNASTRAND - RFA_00684

RNA: RFA_00684
Rfam family: Hammerhead_1

			AUCCAGCCGAUGAGUUCCAAACAGGACUAAACGCGCUUCUUGGAU
Reference structure (ext)		[ sec struct ]	((((((.......((((......))))...(((()))).))))))
Afold	[ FASTA input ]	[ sec struct ]	(((((((((...(((((......)))))...)).))....)))))
Alterna	[ FASTA input ]	[ sec struct ]	((((((.((.(.(((((......))))).).))......))))))
CMfinder(seed)	[ FASTA input ]	[ sec struct ]	........((.(.((((......))))........).))......
CRWrnafold	[ FASTA input ]	[ sec struct ]	(((((..((...(((((......))))).....)).....)))))
Carnac(seed)	[ FASTA input ]	[ sec struct ]	((((((......(((((......)))))...........))))))
CentroidAlifold(seed)	[ FASTA input ]	[ sec struct ]	((((((.................................))))))
CentroidFold	[ FASTA input ]	[ sec struct ]	(((((((((...(((((......)))))...)).))....)))))
CentroidHomfold‑LAST	[ FASTA input ]	[ sec struct ]	((((((......(((((......)))))...........))))))
ContextFold	[ FASTA input ]	[ sec struct ]	((((((..(.(..((((......)))).......).)..))))))
Contrafold	[ FASTA input ]	[ sec struct ]	(((((((((...(((((......)))))...)).))....)))))
Cylofold	[ FASTA input ]	[ sec struct ]	((((((......(((((......)))))...........))))))
DAFS(seed)	[ FASTA input ]	[ sec struct ]	((((((..(.............................)))))))
DotKnot	[ FASTA input ]	[ sec struct ]	....(((.....(((((......)))))......)))........
Fold	[ FASTA input ]	[ sec struct ]	(((((((((...(((((......)))))...)).))....)))))
HotKnots	[ FASTA input ]	[ sec struct ]	(((((((((...(((((......)))))...)).))....)))))
IPknot	[ FASTA input ]	[ sec struct ]	(((((((((...(((((......)))))...)).))....)))))
MCFold (ext)	[ FASTA input ]	[ sec struct ]	((((((((((((((((((....))))))))))).)))....))))
MXScarna(seed)	[ FASTA input ]	[ sec struct ]	.(((((..(((((((((......)))).......)))))))))).
Mastr(seed)	[ FASTA input ]	[ sec struct ]	.............................................
MaxExpect	[ FASTA input ]	[ sec struct ]	.((((((((...(((((......)))))...)).))....)))).
McQFold	[ FASTA input ]	[ sec struct ]	((((((......(((((......)))))...........))))))
Murlet(seed)	[ FASTA input ]	[ sec struct ]	.............................................
NanoFolder	[ FASTA input ]	[ sec struct ]	((((((..(((([[[[[....))]]]]].........))))))))
PETfold_2.0(seed)	[ FASTA input ]	[ sec struct ]	..(((...((...((..........))..........)).)))..
PETfold_pre2.0(seed)	[ FASTA input ]	[ sec struct ]	...((...((.(.((..........))....).....)).))...
Pknots	[ FASTA input ]	[ sec struct ]	....(((((......(((.....)))[[[[.)).)))..]]]]..
PknotsRG	[ FASTA input ]	[ sec struct ]	(((((((((...(((((......)))))...)).)))....))))
ProbKnot	[ FASTA input ]	[ sec struct ]	(((((((((.(.(((((......))))))..)).))....)))))
RDfolder	[ FASTA input ]	[ sec struct ]	............(((((......))))).................
RNASLOpt	[ FASTA input ]	[ sec struct ]	((((((......(((((......)))))...........))))))
RNASampler(seed)	[ FASTA input ]	[ sec struct ]	.............((((......))))..................
RNAalifold(seed)	[ FASTA input ]	[ sec struct ]	.............................................
RNAfold	[ FASTA input ]	[ sec struct ]	(((((((((...(((((......)))))...)).))....)))))
RNAshapes	[ FASTA input ]	[ sec struct ]	(((((((((...(((((......)))))...)).))....)))))
RNAsubopt	[ FASTA input ]	[ sec struct ]	(((((((((...(((((......)))))...)).)))....))))
RNAwolf (ext)	[ FASTA input ]	[ sec struct ]	((((.((((.............))).)..............))))
RSpredict(seed)	[ FASTA input ]	[ sec struct ]	(((((......(.((((......))))...........).)))))
Sfold	[ FASTA input ]	[ sec struct ]	(((((((((...(((((......)))))...)).)))....))))
UNAFold	[ FASTA input ]	[ sec struct ]	(((((((((...(((((......)))))...)).))....)))))
Vsfold4	[ FASTA input ]	[ sec struct ]	.((((.......(((((......)))))............)))).
Vsfold5	[ FASTA input ]	[ sec struct ]	.((((.......(((((......)))))............)))).

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