RNA Secondary Structure Atlas - RNASTRAND - RFA_00685

RNA: RFA_00685
Rfam family: Hammerhead_1

			AUCCAACCGAUGAGUCCCAAAUAGAACGAAACCUGCGUCCUGGAU
Reference structure (ext)		[ sec struct ]	((((((.......((((......))))...(((()))).))))))
Afold	[ FASTA input ]	[ sec struct ]	(((((...((((((..................)).)))).)))))
Alterna	[ FASTA input ]	[ sec struct ]	(((((...((((.((...............))...)))).)))))
CMfinder(seed)	[ FASTA input ]	[ sec struct ]	........((((.((.(......).))........))))......
CRWrnafold	[ FASTA input ]	[ sec struct ]	(((((...((((((..................)).)))).)))))
Carnac(seed)	[ FASTA input ]	[ sec struct ]	(((((...................................)))))
CentroidAlifold(seed)	[ FASTA input ]	[ sec struct ]	((((((.................................))))))
CentroidFold	[ FASTA input ]	[ sec struct ]	.(((......................((.......))....))).
CentroidHomfold‑LAST	[ FASTA input ]	[ sec struct ]	(((((...((....(..........)((.......)))).)))))
ContextFold	[ FASTA input ]	[ sec struct ]	(((((........(((.......).))....(....)...)))))
Contrafold	[ FASTA input ]	[ sec struct ]	(((((..................(.(((.......))).))))))
Cylofold	[ FASTA input ]	[ sec struct ]	(((((....................(((.......)))..)))))
DAFS(seed)	[ FASTA input ]	[ sec struct ]	((((((..(.............................)))))))
DotKnot	[ FASTA input ]	[ sec struct ]	(((((...((((.........(((........))))))).)))))
Fold	[ FASTA input ]	[ sec struct ]	(((((...((((((..................)).)))).)))))
HotKnots	[ FASTA input ]	[ sec struct ]	(((((...((((((..................)).)))).)))))
IPknot	[ FASTA input ]	[ sec struct ]	(((((...(((.........................))).)))))
MCFold (ext)	[ FASTA input ]	[ sec struct ]	(((((((((((((((((((..)))))))))))..).))..)))))
MXScarna(seed)	[ FASTA input ]	[ sec struct ]	.(((((..((((.((((......))))........))))))))).
Mastr(seed)	[ FASTA input ]	[ sec struct ]	.(((....(((..(((........))).........)))..))).
MaxExpect	[ FASTA input ]	[ sec struct ]	.((((...((((((..................)).)))).)))).
McQFold	[ FASTA input ]	[ sec struct ]	(((((...((((.......................)))).)))))
Murlet(seed)	[ FASTA input ]	[ sec struct ]	.............................................
PETfold_2.0(seed)	[ FASTA input ]	[ sec struct ]	..(((...((...((..........))..........)).)))..
PETfold_pre2.0(seed)	[ FASTA input ]	[ sec struct ]	...((...((.(.((..........))....).....)).))...
Pknots	[ FASTA input ]	[ sec struct ]	(((.....)))..(((((.....).(((.......)))...))))
PknotsRG	[ FASTA input ]	[ sec struct ]	(((((...((((((..................)).)))).)))))
ProbKnot	[ FASTA input ]	[ sec struct ]	(((((...((((((..................)).)))).)))))
RDfolder	[ FASTA input ]	[ sec struct ]	(((((...((((.......................)))).)))))
RNASLOpt	[ FASTA input ]	[ sec struct ]	(((((...((((.......................)))).)))))
RNASampler(seed)	[ FASTA input ]	[ sec struct ]	.............................................
RNAalifold(seed)	[ FASTA input ]	[ sec struct ]	.............................................
RNAfold	[ FASTA input ]	[ sec struct ]	(((((...((((((..................)).)))).)))))
RNAshapes	[ FASTA input ]	[ sec struct ]	(((((...((((((..................)).)))).)))))
RNAsubopt	[ FASTA input ]	[ sec struct ]	(((((...((((((..................)).)))).)))))
RNAwolf (ext)	[ FASTA input ]	[ sec struct ]	((((((.((.(........)..))(((...)))......))))))
RSpredict(seed)	[ FASTA input ]	[ sec struct ]	(((((...((((.((.(......).))........)))).)))))
Sfold	[ FASTA input ]	[ sec struct ]	(((((...((((.......................)))).)))))
UNAFold	[ FASTA input ]	[ sec struct ]	(((((...((((((..................)).)))).)))))
Vsfold4	[ FASTA input ]	[ sec struct ]	.((((...((((((..................)).)))).)))).
Vsfold5	[ FASTA input ]	[ sec struct ]	.((((...((((((..................)).)))).)))).

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