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RNA Secondary Structure Atlas - RNASTRAND - RFA_00704
RNA: RFA_00704
Rfam family:
Hammerhead_1
| AUUUAGCUGACGAGUCCCAAACGGUACGAAACUGGCGUCCUUGAU | |||
| Reference structure (ext) | [ sec struct ] | ((((((.......((((......))))...(((()))).)))))) | |
| Afold | [ FASTA input ] | [ sec struct ] | (((.((..((((..((((....))...))......)))))).))) |
| Alterna | [ FASTA input ] | [ sec struct ] | (((.((..((((....((....(((.....))))))))))).))) |
| CMfinder(seed) | [ FASTA input ] | [ sec struct ] | ........((((.((.(......).))........))))...... |
| CMfinder(20) | [ FASTA input ] | [ sec struct ] | ........((((.((.(......).))........))))...... |
| CRWrnafold | [ FASTA input ] | [ sec struct ] | ..(((...(((((((...............)))..))))..))). |
| Carnac(seed) | [ FASTA input ] | [ sec struct ] | ............................................. |
| Carnac(20) | [ FASTA input ] | [ sec struct ] | ............................................. |
| CentroidAlifold(seed) | [ FASTA input ] | [ sec struct ] | ((((((.................................)))))) |
| CentroidAlifold(20) | [ FASTA input ] | [ sec struct ] | .(((((..(((.........................)))))))). |
| CentroidFold | [ FASTA input ] | [ sec struct ] | ............................................. |
| CentroidHomfold‑LAST | [ FASTA input ] | [ sec struct ] | (((.((...(...((.((....)).))(.......).).)).))) |
| ContextFold | [ FASTA input ] | [ sec struct ] | (((..((((....((.((....)).)).....))))......))) |
| Contrafold | [ FASTA input ] | [ sec struct ] | ........(((..((.((....)).))(.......))))...... |
| Cylofold | [ FASTA input ] | [ sec struct ] | ........((((.........((((.....)))).))))...... |
| DAFS(seed) | [ FASTA input ] | [ sec struct ] | ((((((..(.............................))))))) |
| DAFS(20) | [ FASTA input ] | [ sec struct ] | ...(....(((.........................)))..)... |
| DotKnot | [ FASTA input ] | [ sec struct ] | ........((((.........((((.....)))).))))...... |
| Fold | [ FASTA input ] | [ sec struct ] | .....(((.....((.((....)).))......)))......... |
| HotKnots | [ FASTA input ] | [ sec struct ] | .....((((.[[[[..[[[..))))(((....]]]))).]]]].. |
| IPknot | [ FASTA input ] | [ sec struct ] | ............................................. |
| MCFold (ext) | [ FASTA input ] | [ sec struct ] | ((((((..(((((((((((((...)))))))))..)))))))))) |
| MXScarna(seed) | [ FASTA input ] | [ sec struct ] | .(((((..((((.((((......))))........))))))))). |
| MXScarna(20) | [ FASTA input ] | [ sec struct ] | .((((..(((((.((((......))))........))))))))). |
| Mastr(seed) | [ FASTA input ] | [ sec struct ] | ..((.............................)).......... |
| Mastr(20) | [ FASTA input ] | [ sec struct ] | .((((...((((.((((......))))........)))).)))). |
| MaxExpect | [ FASTA input ] | [ sec struct ] | .....((......)...(....)............)......... |
| McQFold | [ FASTA input ] | [ sec struct ] | ........((((.........((((.....)))).))))...... |
| Multilign(20) | [ FASTA input ] | [ sec struct ] | ............................................. |
| Murlet(seed) | [ FASTA input ] | [ sec struct ] | ............................................. |
| Murlet(20) | [ FASTA input ] | [ sec struct ] | ............................................. |
| PETfold_2.0(seed) | [ FASTA input ] | [ sec struct ] | ...(((..((.(.((..........))....).....)))))... |
| PETfold_2.0(20) | [ FASTA input ] | [ sec struct ] | ........((((....)...................)))...... |
| PETfold_pre2.0(seed) | [ FASTA input ] | [ sec struct ] | ...((...((.(.((..........))....).....)).))... |
| PETfold_pre2.0(20) | [ FASTA input ] | [ sec struct ] | ........((.(....)....................))...... |
| PPfold(20) | [ FASTA input ] | [ sec struct ] | ...........(....)............................ |
| Pknots | [ FASTA input ] | [ sec struct ] | .....((...[[[[.......((((.....))))))...]]]].. |
| PknotsRG | [ FASTA input ] | [ sec struct ] | ........((((.........((((.....)))).))))...... |
| ProbKnot | [ FASTA input ] | [ sec struct ] | .....(((....))).............................. |
| RDfolder | [ FASTA input ] | [ sec struct ] | ..........((((..(((.............)))....)))).. |
| RNASLOpt | [ FASTA input ] | [ sec struct ] | ..........((((.......((((.....)))).....)))).. |
| RNASampler(seed) | [ FASTA input ] | [ sec struct ] | .............(((......))).................... |
| RNASampler(20) | [ FASTA input ] | [ sec struct ] | ........((((.......................))))...... |
| RNAalifold(seed) | [ FASTA input ] | [ sec struct ] | ............................................. |
| RNAalifold(20) | [ FASTA input ] | [ sec struct ] | ............................................. |
| RNAfold | [ FASTA input ] | [ sec struct ] | ..........((((..(....((((.....))))..)..)))).. |
| RNAshapes | [ FASTA input ] | [ sec struct ] | ........((((.........((((.....)))).))))...... |
| RNAsubopt | [ FASTA input ] | [ sec struct ] | ..........((((..(....((((.....))))..)..)))).. |
| RNAwolf (ext) | [ FASTA input ] | [ sec struct ] | ......(.(((..)))((((((......))).)))....(..)). |
| RSpredict(seed) | [ FASTA input ] | [ sec struct ] | (((.(...((((..(.(..........).).....)))).).))) |
| RSpredict(20) | [ FASTA input ] | [ sec struct ] | (((.((..((((..((...........))......)))))).))) |
| Sfold | [ FASTA input ] | [ sec struct ] | ..........((((..(....((((.....))))..)..)))).. |
| TurboFold(20) | [ FASTA input ] | [ sec struct ] | ........((((.((.((....)).))........))))...... |
| UNAFold | [ FASTA input ] | [ sec struct ] | .....(((.....((.((....)).))......)))......... |
| Vsfold4 | [ FASTA input ] | [ sec struct ] | ........((((.........((((.....)))).))))...... |
| Vsfold5 | [ FASTA input ] | [ sec struct ] | ........((((.........((((.....)))).))))...... |