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RNA Secondary Structure Atlas - RNASTRAND - RFA_00706
RNA: RFA_00706
Rfam family:
Hammerhead_1
| CAAUUGCUGAGGAGUCCCAUAAUAGGACGAAACGGCCGUCCAGUGC | |||
| Reference structure (ext) | [ sec struct ] | ((((((.......((((.......))))...(((()))).)))))) | |
| Afold | [ FASTA input ] | [ sec struct ] | (....((((....((((.......))))....)))).........) |
| Alterna | [ FASTA input ] | [ sec struct ] | ....(((((.((.((((.......)))).......))...))))). |
| CMfinder(seed) | [ FASTA input ] | [ sec struct ] | ........((.(.((((.......))))........).))...... |
| CRWrnafold | [ FASTA input ] | [ sec struct ] | ..((.((((....((((.......))))....)))).))....... |
| Carnac(seed) | [ FASTA input ] | [ sec struct ] | .............((((.......)))).................. |
| CentroidAlifold(seed) | [ FASTA input ] | [ sec struct ] | ((((((..................................)))))) |
| CentroidFold | [ FASTA input ] | [ sec struct ] | ..............(((.......)))((.......))........ |
| CentroidHomfold‑LAST | [ FASTA input ] | [ sec struct ] | ....(((((....((((.......))))(.......)...))))). |
| ContextFold | [ FASTA input ] | [ sec struct ] | ..((((.......((((.......))))...((....)).)))).. |
| Contrafold | [ FASTA input ] | [ sec struct ] | .....((((....((((.......))))....)))).......... |
| Cylofold | [ FASTA input ] | [ sec struct ] | .....((((...............[[[[[...))))]]]]]..... |
| DAFS(seed) | [ FASTA input ] | [ sec struct ] | ((((((..(..............................))))))) |
| DotKnot | [ FASTA input ] | [ sec struct ] | .....((((.[[[((((.......))))....))))..]]]..... |
| Fold | [ FASTA input ] | [ sec struct ] | .....((((....((((.......))))....)))).......... |
| HotKnots | [ FASTA input ] | [ sec struct ] | .....((((.[[[(((({{{....))))....))))..]]].}}}. |
| IPknot | [ FASTA input ] | [ sec struct ] | .....((((....((((.......))))....)))).......... |
| MCFold (ext) | [ FASTA input ] | [ sec struct ] | ((((((((((((....))))))))(((((((...))))))))))). |
| MXScarna(seed) | [ FASTA input ] | [ sec struct ] | .(((((..((((.((((.......))))........))))))))). |
| Mastr(seed) | [ FASTA input ] | [ sec struct ] | ..((...........(........).................)).. |
| MaxExpect | [ FASTA input ] | [ sec struct ] | .....((((....((((.......))))....)))).......... |
| McQFold | [ FASTA input ] | [ sec struct ] | ........................(((((.......)))))..... |
| Murlet(seed) | [ FASTA input ] | [ sec struct ] | .............................................. |
| PETfold_2.0(seed) | [ FASTA input ] | [ sec struct ] | ..(((...((...((...........))..........)).))).. |
| PETfold_pre2.0(seed) | [ FASTA input ] | [ sec struct ] | ...((...((.(.((...........))....).....)).))... |
| Pknots | [ FASTA input ] | [ sec struct ] | ((.....)).((....))......(((((.......)))))..... |
| PknotsRG | [ FASTA input ] | [ sec struct ] | .....((((.[[[((((.......))))....))))..]]]..... |
| ProbKnot | [ FASTA input ] | [ sec struct ] | ..((([[[[....[[[....)))..]]]....]]]].......... |
| RDfolder | [ FASTA input ] | [ sec struct ] | ..(((.......))).........(((((.......)))))..... |
| RNASLOpt | [ FASTA input ] | [ sec struct ] | .....((((....((((.......))))....)))).......... |
| RNASampler(seed) | [ FASTA input ] | [ sec struct ] | .............................................. |
| RNAalifold(seed) | [ FASTA input ] | [ sec struct ] | .............................................. |
| RNAfold | [ FASTA input ] | [ sec struct ] | .....((((....((((.......))))....)))).......... |
| RNAshapes | [ FASTA input ] | [ sec struct ] | .....((((....((((.......))))....)))).......... |
| RNAsubopt | [ FASTA input ] | [ sec struct ] | .....(((..((....))......(((((.......)))))))).. |
| RNAwolf (ext) | [ FASTA input ] | [ sec struct ] | ((..))((((((.(..((.(........)).)..))))..)))... |
| RSpredict(seed) | [ FASTA input ] | [ sec struct ] | ..((....((.(.((((.......))))........).))..)).. |
| Sfold | [ FASTA input ] | [ sec struct ] | ........................(((((.......)))))..... |
| UNAFold | [ FASTA input ] | [ sec struct ] | .....((((....((((.......))))....)))).......... |
| Vsfold4 | [ FASTA input ] | [ sec struct ] | ..((((.((........)))))).(((((.......)))))..... |
| Vsfold5 | [ FASTA input ] | [ sec struct ] | ..((((.((.((...)))))))).(((((.......)))))..... |