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RNA Secondary Structure Atlas - RNASTRAND - RFA_00707
RNA: RFA_00707
Rfam family:
Hammerhead_1
| GCACUGCUGAGGAGUCCCACAAUAGGACGAAACGACCGUCCAGUAC | |||
| Reference structure (ext) | [ sec struct ] | ((((((.......((((.......))))...(((()))).)))))) | |
| Afold | [ FASTA input ] | [ sec struct ] | (......((.((....)).))...(((((.......)))))....) |
| Alterna | [ FASTA input ] | [ sec struct ] | ....(((((.((.((((.......)))).......))...))))). |
| CMfinder(seed) | [ FASTA input ] | [ sec struct ] | ........((.(.((((.......))))........).))...... |
| CMfinder(20) | [ FASTA input ] | [ sec struct ] | ........((.(.((((.......))))........).))...... |
| CRWrnafold | [ FASTA input ] | [ sec struct ] | ((.....((.((....)).))...(((((.......))))).)).. |
| Carnac(seed) | [ FASTA input ] | [ sec struct ] | .............((((.......)))).................. |
| Carnac(20) | [ FASTA input ] | [ sec struct ] | .............................................. |
| CentroidAlifold(seed) | [ FASTA input ] | [ sec struct ] | ((((((..................................)))))) |
| CentroidAlifold(20) | [ FASTA input ] | [ sec struct ] | .(((((..(((..........................)))))))). |
| CentroidFold | [ FASTA input ] | [ sec struct ] | ........................(((((.......)))))..... |
| CentroidHomfold‑LAST | [ FASTA input ] | [ sec struct ] | .....(((................(((((.......)))))))).. |
| ContextFold | [ FASTA input ] | [ sec struct ] | (.((((.......((((.......))))...((....)).)))).) |
| Contrafold | [ FASTA input ] | [ sec struct ] | ..........((....))....(.(((((.......))))).)... |
| Cylofold | [ FASTA input ] | [ sec struct ] | ........................(((((.......)))))..... |
| DAFS(seed) | [ FASTA input ] | [ sec struct ] | ((((((..(..............................))))))) |
| DAFS(20) | [ FASTA input ] | [ sec struct ] | .........(............................)....... |
| DotKnot | [ FASTA input ] | [ sec struct ] | ........................(((((.......)))))..... |
| Fold | [ FASTA input ] | [ sec struct ] | ..........((....))......(((((.......)))))..... |
| HotKnots | [ FASTA input ] | [ sec struct ] | .......((.((....)).))...(((((.......)))))..... |
| IPknot | [ FASTA input ] | [ sec struct ] | ........................(((((.......)))))..... |
| MCFold (ext) | [ FASTA input ] | [ sec struct ] | ((((((((((((....))))))(((((((...))))))).)))))) |
| MXScarna(seed) | [ FASTA input ] | [ sec struct ] | .(((((..((((.((((.......))))........))))))))). |
| MXScarna(20) | [ FASTA input ] | [ sec struct ] | .((((..(((((.((((.......))))........))))))))). |
| Mastr(seed) | [ FASTA input ] | [ sec struct ] | .((.....(((..(((.........))).........)))...)). |
| Mastr(20) | [ FASTA input ] | [ sec struct ] | .((((...(..(..(((......))).........))....)))). |
| MaxExpect | [ FASTA input ] | [ sec struct ] | ..........((....))......(((((.......)))))..... |
| McQFold | [ FASTA input ] | [ sec struct ] | ........................(((((.......)))))..... |
| Multilign(20) | [ FASTA input ] | [ sec struct ] | .............................................. |
| Murlet(seed) | [ FASTA input ] | [ sec struct ] | .............................................. |
| Murlet(20) | [ FASTA input ] | [ sec struct ] | .............................................. |
| PETfold_2.0(seed) | [ FASTA input ] | [ sec struct ] | ..(((...((...((...........))..........)).))).. |
| PETfold_2.0(20) | [ FASTA input ] | [ sec struct ] | ...........(....).......(((((.......)))))..... |
| PETfold_pre2.0(seed) | [ FASTA input ] | [ sec struct ] | ...((...((.(.((...........))....).....)).))... |
| PETfold_pre2.0(20) | [ FASTA input ] | [ sec struct ] | ...........(....).......(((((.......)))))..... |
| PPfold(20) | [ FASTA input ] | [ sec struct ] | ...........(....)........((...........))...... |
| Pknots | [ FASTA input ] | [ sec struct ] | .((....)).((....))......(((((.......)))))..... |
| PknotsRG | [ FASTA input ] | [ sec struct ] | ....(((...((....))......(((((.......))))).))). |
| ProbKnot | [ FASTA input ] | [ sec struct ] | ....(((.................(((((.......))))).))). |
| RDfolder | [ FASTA input ] | [ sec struct ] | ........................(((((.......)))))..... |
| RNASLOpt | [ FASTA input ] | [ sec struct ] | ........................(((((.......)))))..... |
| RNASampler(seed) | [ FASTA input ] | [ sec struct ] | .............................................. |
| RNASampler(20) | [ FASTA input ] | [ sec struct ] | .............................................. |
| RNAalifold(seed) | [ FASTA input ] | [ sec struct ] | .............................................. |
| RNAalifold(20) | [ FASTA input ] | [ sec struct ] | .............................................. |
| RNAfold | [ FASTA input ] | [ sec struct ] | .......((.((....)).))...(((((.......)))))..... |
| RNAshapes | [ FASTA input ] | [ sec struct ] | .......((.((....)).))...(((((.......)))))..... |
| RNAsubopt | [ FASTA input ] | [ sec struct ] | ....((((..((....))......(((((.......))))))))). |
| RNAwolf (ext) | [ FASTA input ] | [ sec struct ] | ...(.((((.(((((..(.............)..)).)))))))). |
| RSpredict(seed) | [ FASTA input ] | [ sec struct ] | (.(((...((.(.((((.......))))........).)).))).) |
| RSpredict(20) | [ FASTA input ] | [ sec struct ] | (.((((..((.(.((((.......))))........).)))))).) |
| Sfold | [ FASTA input ] | [ sec struct ] | ..........((....))......(((((.......)))))..... |
| TurboFold(20) | [ FASTA input ] | [ sec struct ] | ........................(((((.......)))))..... |
| UNAFold | [ FASTA input ] | [ sec struct ] | .......((.((....)).))...(((((.......)))))..... |
| Vsfold4 | [ FASTA input ] | [ sec struct ] | ....(((((.((.((((.......)))).......))...))))). |
| Vsfold5 | [ FASTA input ] | [ sec struct ] | ....(((((.((.((((.......))))..........))))))). |