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RNA Secondary Structure Atlas - RNASTRAND - RFA_00708
RNA: RFA_00708
Rfam family:
Hammerhead_1
| GCACUUCUGAAGAGUCCCAUGCUAGGACGAAACAGCCUUCCAGUAC | |||
| Reference structure (ext) | [ sec struct ] | ((((((.......((((.......))))...(((()))).)))))) | |
| Afold | [ FASTA input ] | [ sec struct ] | (.....(((....((((.......))))....)))..........) |
| Alterna | [ FASTA input ] | [ sec struct ] | ..(((...((((.((((.......))))........)))).))).. |
| CMfinder(seed) | [ FASTA input ] | [ sec struct ] | ........((((.((((.......))))........))))...... |
| CRWrnafold | [ FASTA input ] | [ sec struct ] | ......((((((.((((.......))))........)))).))... |
| Carnac(seed) | [ FASTA input ] | [ sec struct ] | .............................................. |
| CentroidAlifold(seed) | [ FASTA input ] | [ sec struct ] | ((((((..((....((.........))...........)))))))) |
| CentroidFold | [ FASTA input ] | [ sec struct ] | ......(((....((((.......))))....)))........... |
| CentroidHomfold‑LAST | [ FASTA input ] | [ sec struct ] | (.(((.(((....((((.......))))....)))......))).) |
| ContextFold | [ FASTA input ] | [ sec struct ] | (((................))).(((.........)))........ |
| Contrafold | [ FASTA input ] | [ sec struct ] | ......(((....((((.......))))....)))........... |
| Cylofold | [ FASTA input ] | [ sec struct ] | .............((((...[[[.)))).....]]].......... |
| DAFS(seed) | [ FASTA input ] | [ sec struct ] | ((((((..(..............................))))))) |
| DotKnot | [ FASTA input ] | [ sec struct ] | (((...[[[....[[[[..)))..]]]]....]]]........... |
| Fold | [ FASTA input ] | [ sec struct ] | ......(((....((((.......))))....)))........... |
| HotKnots | [ FASTA input ] | [ sec struct ] | (((.{{(.{{{{.{{{{..)))..}}}})}}.....}}}}...... |
| IPknot | [ FASTA input ] | [ sec struct ] | ......(((....((((.......))))....)))........... |
| MCFold (ext) | [ FASTA input ] | [ sec struct ] | ((((((((..)))((((((...))))))(((((..))))).))))) |
| MXScarna(seed) | [ FASTA input ] | [ sec struct ] | .(((((..((((..(((.......))).........))))))))). |
| Mastr(seed) | [ FASTA input ] | [ sec struct ] | .(((..........(..........)................))). |
| MaxExpect | [ FASTA input ] | [ sec struct ] | ......(((....((((.......))))....)))........... |
| McQFold | [ FASTA input ] | [ sec struct ] | ........((((.((((.......))))........))))...... |
| Multilign(seed) | [ FASTA input ] | [ sec struct ] | .............................................. |
| Murlet(seed) | [ FASTA input ] | [ sec struct ] | .............................................. |
| PETfold_2.0(seed) | [ FASTA input ] | [ sec struct ] | ..(((...((...((...........))..........)).))).. |
| PETfold_pre2.0(seed) | [ FASTA input ] | [ sec struct ] | ...((...((.(.((...........))....).....)).))... |
| PPfold(seed) | [ FASTA input ] | [ sec struct ] | ........(....((...........))...........)...... |
| Pknots | [ FASTA input ] | [ sec struct ] | ....(((.[[[[.((((.......))))))).....]]]]...... |
| PknotsRG | [ FASTA input ] | [ sec struct ] | ........((((.((((.......))))......[[))))..]].. |
| ProbKnot | [ FASTA input ] | [ sec struct ] | ......((([[[.((((.......))))....))).]]]....... |
| RDfolder | [ FASTA input ] | [ sec struct ] | ...................((((.(((...........))))))). |
| RNASLOpt | [ FASTA input ] | [ sec struct ] | .............((((.......)))).................. |
| RNASampler(seed) | [ FASTA input ] | [ sec struct ] | .............................................. |
| RNAalifold(seed) | [ FASTA input ] | [ sec struct ] | .............................................. |
| RNAfold | [ FASTA input ] | [ sec struct ] | ......(((....((((.......))))....)))........... |
| RNAshapes | [ FASTA input ] | [ sec struct ] | ......(((....((((.......))))....)))........... |
| RNAsubopt | [ FASTA input ] | [ sec struct ] | ......(((....((((.......))))....)))........... |
| RNAwolf (ext) | [ FASTA input ] | [ sec struct ] | ......((((((.((..(.(..........))..))))).)))... |
| RSpredict(seed) | [ FASTA input ] | [ sec struct ] | (.(((......(.((((.......))))...........).))).) |
| Sfold | [ FASTA input ] | [ sec struct ] | ......(((....((((.......))))....)))........... |
| TurboFold(seed) | [ FASTA input ] | [ sec struct ] | ......(((....((((.......))))....)))........... |
| UNAFold | [ FASTA input ] | [ sec struct ] | ......(((....((((.......))))....)))........... |
| Vsfold4 | [ FASTA input ] | [ sec struct ] | ........((((.((((.......))))........))))...... |
| Vsfold5 | [ FASTA input ] | [ sec struct ] | ..((((.....))))....((((..................)))). |