RNA Secondary Structure Atlas - RNASTRAND - RFA_00709

RNA: RFA_00709
Rfam family: Hammerhead_1

			AUCUAGCUGACGAGUCCCGAAUAGGAGGAAGUGCUCGUUCAAUAU
Reference structure (ext)		[ sec struct ]	((((((.......((((......))))...(((()))).))))))
Afold	[ FASTA input ]	[ sec struct ]	((......(((((((.((........))....)))))))....))
Alterna	[ FASTA input ]	[ sec struct ]	........(((((((((.........))....)))))))......
CMfinder(seed)	[ FASTA input ]	[ sec struct ]	........((((..(((......))).........))))......
CRWrnafold	[ FASTA input ]	[ sec struct ]	...((...(((((((.................)))))))...)).
Carnac(seed)	[ FASTA input ]	[ sec struct ]	........(((((((.................)))))))......
CentroidAlifold(seed)	[ FASTA input ]	[ sec struct ]	((((((.................................))))))
CentroidFold	[ FASTA input ]	[ sec struct ]	........(((((((.((........))....)))))))......
CentroidHomfold‑LAST	[ FASTA input ]	[ sec struct ]	((.(.(..((((.(.((......))........).))))).).))
ContextFold	[ FASTA input ]	[ sec struct ]	((......(((((((.(....(....)...).)))))))....))
Contrafold	[ FASTA input ]	[ sec struct ]	........((((((((((........))..).)))))))......
Cylofold	[ FASTA input ]	[ sec struct ]	........(((((((((......))).......))))))......
DAFS(seed)	[ FASTA input ]	[ sec struct ]	((((((..(.............................)))))))
DotKnot	[ FASTA input ]	[ sec struct ]	..(((...[[[[[[[......)))........]]]]]]]......
Fold	[ FASTA input ]	[ sec struct ]	.......((((((((.((........))....))))).)))....
HotKnots	[ FASTA input ]	[ sec struct ]	.......((((((((.((........))....))))).)))....
IPknot	[ FASTA input ]	[ sec struct ]	........(((((((.((........))....)))))))......
MCFold (ext)	[ FASTA input ]	[ sec struct ]	((((((..((((((((((((....))))..).)))))))))))))
MXScarna(seed)	[ FASTA input ]	[ sec struct ]	.(((((..((((.((((......))))........))))))))).
Mastr(seed)	[ FASTA input ]	[ sec struct ]	..((.........((((......))))..............))..
MaxExpect	[ FASTA input ]	[ sec struct ]	........(((((((.((........))....)))))).).....
McQFold	[ FASTA input ]	[ sec struct ]	........(((((((.................)))))))......
Murlet(seed)	[ FASTA input ]	[ sec struct ]	.............................................
PETfold_2.0(seed)	[ FASTA input ]	[ sec struct ]	..(((...((...((..........))..........)).)))..
PETfold_pre2.0(seed)	[ FASTA input ]	[ sec struct ]	...((...((.(.((..........))....).....)).))...
Pknots	[ FASTA input ]	[ sec struct ]	.(((....[[[[[[(((......))))))....]]]]]]......
PknotsRG	[ FASTA input ]	[ sec struct ]	.(((....[[[[[[[.((.....)).)))...]]]]]]]......
ProbKnot	[ FASTA input ]	[ sec struct ]	.......((((((((.................)))))).))....
RDfolder	[ FASTA input ]	[ sec struct ]	.........((((((((.........)))....))))).......
RNASLOpt	[ FASTA input ]	[ sec struct ]	........(((((((.................)))))))......
RNASampler(seed)	[ FASTA input ]	[ sec struct ]	.............................................
RNAalifold(seed)	[ FASTA input ]	[ sec struct ]	.............................................
RNAfold	[ FASTA input ]	[ sec struct ]	........(((((((.((........))....)))))))......
RNAshapes	[ FASTA input ]	[ sec struct ]	........(((((((.((........))....)))))))......
RNAsubopt	[ FASTA input ]	[ sec struct ]	.......((((((((.((........))....)))))).))....
RNAwolf (ext)	[ FASTA input ]	[ sec struct ]	.......((((((((((((......))).)..)))))).))....
RSpredict(seed)	[ FASTA input ]	[ sec struct ]	((.(....((.(..(((......))).......))).....).))
Sfold	[ FASTA input ]	[ sec struct ]	.......((((((((.((........))....)))))).))....
UNAFold	[ FASTA input ]	[ sec struct ]	........(((((((.((........))....)))))))......
Vsfold4	[ FASTA input ]	[ sec struct ]	........((((((...................))))))......
Vsfold5	[ FASTA input ]	[ sec struct ]	.((((...[[[[[[[......)))).......]]]]]]]......

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