RNA Secondary Structure Atlas - RNASTRAND - RFA_00710

RNA: RFA_00710
Rfam family: Hammerhead_1

			AUCUAAAUGACGAGUCCUAAAUGGAACUAAACACAUGUGUUUGAU
Reference structure (ext)		[ sec struct ]	((((((.......((((......))))...(((()))).))))))
Afold	[ FASTA input ]	[ sec struct ]	(((...........(((.....)))...(((((....))))))))
Alterna	[ FASTA input ]	[ sec struct ]	(((.........(((((.....)).)))(((((....))))))))
CMfinder(seed)	[ FASTA input ]	[ sec struct ]	.........(((.((.(......).))........))).......
CRWrnafold	[ FASTA input ]	[ sec struct ]	.((((................))))..((((((....))))))..
Carnac(seed)	[ FASTA input ]	[ sec struct ]	..............(((.....)))....................
CentroidAlifold(seed)	[ FASTA input ]	[ sec struct ]	((((((..(((..(((........))).........)))))))))
CentroidFold	[ FASTA input ]	[ sec struct ]	...........................((((((....))))))..
CentroidHomfold‑LAST	[ FASTA input ]	[ sec struct ]	(((.(........((.(......).)).............).)))
ContextFold	[ FASTA input ]	[ sec struct ]	(((..........((((.....)).))..((((....)))).)))
Contrafold	[ FASTA input ]	[ sec struct ]	..............(((.....)))..(((((((())))))))..
Cylofold	[ FASTA input ]	[ sec struct ]	..............(((.....)))..((((((....))))))..
DAFS(seed)	[ FASTA input ]	[ sec struct ]	((((((..(.............................)))))))
DotKnot	[ FASTA input ]	[ sec struct ]	..............(((.....)))..((((((....))))))..
Fold	[ FASTA input ]	[ sec struct ]	............(((((.....)).))).((((....))))....
HotKnots	[ FASTA input ]	[ sec struct ]	..............(((.....)))..((((((....))))))..
IPknot	[ FASTA input ]	[ sec struct ]	............(((((.....))).))(((((....)))))...
MCFold (ext)	[ FASTA input ]	[ sec struct ]	((((((((((.((.((((..).)))))))))(((..)))))))))
MXScarna(seed)	[ FASTA input ]	[ sec struct ]	.(((((..((((.((((......))))........))))))))).
Mastr(seed)	[ FASTA input ]	[ sec struct ]	.(((.........(((........)))..............))).
MaxExpect	[ FASTA input ]	[ sec struct ]	..............(((.....)))..((((((....))))))..
McQFold	[ FASTA input ]	[ sec struct ]	..............(((.....)))..(((((((..)))))))..
Murlet(seed)	[ FASTA input ]	[ sec struct ]	.............................................
PETfold_2.0(seed)	[ FASTA input ]	[ sec struct ]	..(((...((...((..........))..........)).)))..
PETfold_pre2.0(seed)	[ FASTA input ]	[ sec struct ]	...((...((.(.((..........))....).....)).))...
Pknots	[ FASTA input ]	[ sec struct ]	..((........))(((.....)))..((((((....))))))..
PknotsRG	[ FASTA input ]	[ sec struct ]	..............(((.....)))..((((((....))))))..
ProbKnot	[ FASTA input ]	[ sec struct ]	.............((((.....))).)((((((....))))))..
RDfolder	[ FASTA input ]	[ sec struct ]	(((.........(((..........)))(((((....))))))))
RNASLOpt	[ FASTA input ]	[ sec struct ]	...........................((((((....))))))..
RNASampler(seed)	[ FASTA input ]	[ sec struct ]	.............................................
RNAalifold(seed)	[ FASTA input ]	[ sec struct ]	.............................................
RNAfold	[ FASTA input ]	[ sec struct ]	..............(((.....)))..((((((....))))))..
RNAshapes	[ FASTA input ]	[ sec struct ]	..............(((.....)))..((((((....))))))..
RNAsubopt	[ FASTA input ]	[ sec struct ]	..............(((.....)))..((((((....))))))..
RNAwolf (ext)	[ FASTA input ]	[ sec struct ]	.(((.(.(...........).))))..(((((((..)))))))..
RSpredict(seed)	[ FASTA input ]	[ sec struct ]	(((.(........((...............))........).)))
Sfold	[ FASTA input ]	[ sec struct ]	..............(((.....)))..((((((....))))))..
UNAFold	[ FASTA input ]	[ sec struct ]	..............(((.....)))..((((((....))))))..
Vsfold4	[ FASTA input ]	[ sec struct ]	.((((................))))..((((((....))))))..
Vsfold5	[ FASTA input ]	[ sec struct ]	.((((................))))..((((((....))))))..

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