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RNA Secondary Structure Atlas - RNASTRAND - RFA_00715
RNA: RFA_00715
Rfam family:
Hammerhead_1
| GGCUAGCAGUGGAAUCCAAAUAGGACGAAACGCGCGUCCUGGAU | |||
| Reference structure (ext) | [ sec struct ] | ((((((.......((((.....))))...(((()))).)))))) | |
| Alterna | [ FASTA input ] | [ sec struct ] | .(((...)))...(((((....(((((.......)))))))))) |
| CMfinder(seed) | [ FASTA input ] | [ sec struct ] | ........(..(..((.......)).........)..)...... |
| CMfinder(20) | [ FASTA input ] | [ sec struct ] | ........(..(..((.......)).........)..)...... |
| CRWrnafold | [ FASTA input ] | [ sec struct ] | .............(((((....(((((.......)))))))))) |
| Carnac(seed) | [ FASTA input ] | [ sec struct ] | .........(((...))).......................... |
| Carnac(20) | [ FASTA input ] | [ sec struct ] | ............................................ |
| CentroidAlifold(seed) | [ FASTA input ] | [ sec struct ] | ((((((................................)))))) |
| CentroidAlifold(20) | [ FASTA input ] | [ sec struct ] | .(((((.................(((.........)))))))). |
| CentroidFold | [ FASTA input ] | [ sec struct ] | ..............(((....((((((.......))))))))). |
| CentroidHomfold‑LAST | [ FASTA input ] | [ sec struct ] | (.((.................((((((.......)))))))).) |
| ContextFold | [ FASTA input ] | [ sec struct ] | ((............)).(..(((((((.......)))))))..) |
| Contrafold | [ FASTA input ] | [ sec struct ] | .............((((....((((((.......)))))))))) |
| Cylofold | [ FASTA input ] | [ sec struct ] | ....................(((((((.......)))))))... |
| DAFS(seed) | [ FASTA input ] | [ sec struct ] | ((((((..(............................))))))) |
| DAFS(20) | [ FASTA input ] | [ sec struct ] | ..((..................(((...........))).)).. |
| DotKnot | [ FASTA input ] | [ sec struct ] | .............(((((....(((((.......)))))))))) |
| Fold | [ FASTA input ] | [ sec struct ] | ..(((....))).(((((....(((((.......)))))))))) |
| HotKnots | [ FASTA input ] | [ sec struct ] | .............(((((....(((((.......)))))))))) |
| IPknot | [ FASTA input ] | [ sec struct ] | .............((((....((((((.......)))))))))) |
| MCFold (ext) | [ FASTA input ] | [ sec struct ] | (((..)))(.((..)))(((((((((((.....))))))))))) |
| MXScarna(seed) | [ FASTA input ] | [ sec struct ] | .(((((..((((.(((......).))........))))))))). |
| MXScarna(20) | [ FASTA input ] | [ sec struct ] | .(((((..((((.(((......).))........))))))))). |
| Mastr(seed) | [ FASTA input ] | [ sec struct ] | .(((.....((........................))...))). |
| Mastr(20) | [ FASTA input ] | [ sec struct ] | .((((...((....(((.....)))((.......)))).)))). |
| MaxExpect | [ FASTA input ] | [ sec struct ] | ..(((....))).((((....((((((.......)))))))))) |
| McQFold | [ FASTA input ] | [ sec struct ] | .............((((....((((((.......)))))))))) |
| Multilign(20) | [ FASTA input ] | [ sec struct ] | ............................................ |
| Murlet(seed) | [ FASTA input ] | [ sec struct ] | ............................................ |
| Murlet(20) | [ FASTA input ] | [ sec struct ] | ............................................ |
| PETfold_2.0(seed) | [ FASTA input ] | [ sec struct ] | ..(((...((...((.........))..........)).))).. |
| PETfold_2.0(20) | [ FASTA input ] | [ sec struct ] | ........((.(....)...................))...... |
| PETfold_pre2.0(seed) | [ FASTA input ] | [ sec struct ] | ...((...((.(.((.........))....).....)).))... |
| PETfold_pre2.0(20) | [ FASTA input ] | [ sec struct ] | ...........(....).....(((...........)))..... |
| PPfold(20) | [ FASTA input ] | [ sec struct ] | ...........(....)........................... |
| Pknots | [ FASTA input ] | [ sec struct ] | ..(((....))).(((((....(((((.......)))))))))) |
| PknotsRG | [ FASTA input ] | [ sec struct ] | .............((((....((((((.......)))))))))) |
| ProbKnot | [ FASTA input ] | [ sec struct ] | ..(((....))).((((....((((((.......)))))))))) |
| RDfolder | [ FASTA input ] | [ sec struct ] | .....................((((((.......)))))).... |
| RNASLOpt | [ FASTA input ] | [ sec struct ] | ....................(((((((.......)))))))... |
| RNASampler(seed) | [ FASTA input ] | [ sec struct ] | ............................................ |
| RNASampler(20) | [ FASTA input ] | [ sec struct ] | ............................................ |
| RNAalifold(seed) | [ FASTA input ] | [ sec struct ] | ............................................ |
| RNAalifold(20) | [ FASTA input ] | [ sec struct ] | ............................................ |
| RNAfold | [ FASTA input ] | [ sec struct ] | .............(((((....(((((.......)))))))))) |
| RNAshapes | [ FASTA input ] | [ sec struct ] | .............(((((....(((((.......)))))))))) |
| RNAsubopt | [ FASTA input ] | [ sec struct ] | .............((((....((((((.......)))))))))) |
| RNAwolf (ext) | [ FASTA input ] | [ sec struct ] | (((..........).))..(..((((((....).)))))..).. |
| RSpredict(seed) | [ FASTA input ] | [ sec struct ] | (.(((...(..(..(((.....))).........)..).))).) |
| RSpredict(20) | [ FASTA input ] | [ sec struct ] | (.(((...(..(..((.......)).........)..).))).) |
| Sfold | [ FASTA input ] | [ sec struct ] | ..............(((....((((((.......))))))))). |
| TurboFold(20) | [ FASTA input ] | [ sec struct ] | ....................(((((((.......)))))))... |
| UNAFold | [ FASTA input ] | [ sec struct ] | .............((((....((((((.......)))))))))) |
| Vsfold4 | [ FASTA input ] | [ sec struct ] | ..............((((....(((((.......))))))))). |
| Vsfold5 | [ FASTA input ] | [ sec struct ] | ..............(((....((((((.......))))))))). |