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RNA Secondary Structure Atlas - RNASTRAND - RFA_00717
RNA: RFA_00717
Rfam family:
Hammerhead_1
| AUCCAGCUGACGAGUCCCAAAUAAGACGAACGCGCGUCUGGAU | |||
| Reference structure (ext) | [ sec struct ] | ((((((.......((((......))))..(((()))))))))) | |
| Afold | [ FASTA input ] | [ sec struct ] | (((((((((.((.(((........)))...)))).).)))))) |
| Alterna | [ FASTA input ] | [ sec struct ] | ((((((...(((.(((........))).......))))))))) |
| CMfinder(seed) | [ FASTA input ] | [ sec struct ] | ........((((.(((........))).......))))..... |
| CMfinder(20) | [ FASTA input ] | [ sec struct ] | .............(((........)))................ |
| CRWrnafold | [ FASTA input ] | [ sec struct ] | ((((.(((....)))........(((((......))))))))) |
| Carnac(seed) | [ FASTA input ] | [ sec struct ] | ........................................... |
| Carnac(20) | [ FASTA input ] | [ sec struct ] | ........................................... |
| CentroidAlifold(seed) | [ FASTA input ] | [ sec struct ] | ((((((........((........))...........)))))) |
| CentroidAlifold(20) | [ FASTA input ] | [ sec struct ] | .(((((...(..........................)))))). |
| CentroidFold | [ FASTA input ] | [ sec struct ] | ((((((.......(((........)))..........)))))) |
| CentroidHomfold‑LAST | [ FASTA input ] | [ sec struct ] | ((((((.......(((........)))..........)))))) |
| ContextFold | [ FASTA input ] | [ sec struct ] | ((((((.......(((........)))..((....)))))))) |
| Contrafold | [ FASTA input ] | [ sec struct ] | ((((((.((.((.(((........)))...))..)).)))))) |
| Cylofold | [ FASTA input ] | [ sec struct ] | ((((...................(((((......))))))))) |
| DAFS(seed) | [ FASTA input ] | [ sec struct ] | ((((((........((........))...........)))))) |
| DAFS(20) | [ FASTA input ] | [ sec struct ] | ...(...................................)... |
| DotKnot | [ FASTA input ] | [ sec struct ] | ((((((...(((.(((........))).......))))))))) |
| Fold | [ FASTA input ] | [ sec struct ] | (((((((((.((.(((........)))...)))).).)))))) |
| HotKnots | [ FASTA input ] | [ sec struct ] | (((((((((.((.(((........)))...)))).).)))))) |
| IPknot | [ FASTA input ] | [ sec struct ] | ((((((.......(((........)))..........)))))) |
| MCFold (ext) | [ FASTA input ] | [ sec struct ] | (((((((((.((((((((((....))))))))))))))))))) |
| MXScarna(seed) | [ FASTA input ] | [ sec struct ] | .(((((...(((.((((......)))).......)))))))). |
| MXScarna(20) | [ FASTA input ] | [ sec struct ] | .(((((...(((.((((......)))).......)))))))). |
| Mastr(seed) | [ FASTA input ] | [ sec struct ] | .((((....((..(((........)))........)).)))). |
| Mastr(20) | [ FASTA input ] | [ sec struct ] | .(((((...(((.((((......)))).......)))))))). |
| MaxExpect | [ FASTA input ] | [ sec struct ] | .((((((((.((.(((........)))...)))).).))))). |
| McQFold | [ FASTA input ] | [ sec struct ] | ((((((...(((.(((........))).......))))))))) |
| Multilign(20) | [ FASTA input ] | [ sec struct ] | ........................................... |
| Murlet(seed) | [ FASTA input ] | [ sec struct ] | ........................................... |
| Murlet(20) | [ FASTA input ] | [ sec struct ] | ........................................... |
| NanoFolder | [ FASTA input ] | [ sec struct ] | ((((((.(([[[.[[[.)).....]]].......]]])))))) |
| PETfold_2.0(seed) | [ FASTA input ] | [ sec struct ] | ..(((....(.(.(((........)))...).....).))).. |
| PETfold_2.0(20) | [ FASTA input ] | [ sec struct ] | ...........(....).......................... |
| PETfold_pre2.0(seed) | [ FASTA input ] | [ sec struct ] | ..(((....(.(.(((........)))...).....).))).. |
| PETfold_pre2.0(20) | [ FASTA input ] | [ sec struct ] | ...........(....).......................... |
| PPfold(20) | [ FASTA input ] | [ sec struct ] | ...........(....).......................... |
| Pknots | [ FASTA input ] | [ sec struct ] | ((((((((...............))(((......))))))))) |
| PknotsRG | [ FASTA input ] | [ sec struct ] | ((((((.((.((.(((........))).....)))).)))))) |
| ProbKnot | [ FASTA input ] | [ sec struct ] | (((((((((.((.(((........)))...)))).).)))))) |
| RDfolder | [ FASTA input ] | [ sec struct ] | .......................(((((......))))).... |
| RNASLOpt | [ FASTA input ] | [ sec struct ] | .............((((......(((((......))))))))) |
| RNASampler(seed) | [ FASTA input ] | [ sec struct ] | ........................................... |
| RNASampler(20) | [ FASTA input ] | [ sec struct ] | ........................................... |
| RNAalifold(seed) | [ FASTA input ] | [ sec struct ] | ........................................... |
| RNAalifold(20) | [ FASTA input ] | [ sec struct ] | ........................................... |
| RNAfold | [ FASTA input ] | [ sec struct ] | ((((((.((.((.(((........))).....)))).)))))) |
| RNAshapes | [ FASTA input ] | [ sec struct ] | ((((((.((.((.(((........))).....)))).)))))) |
| RNAsubopt | [ FASTA input ] | [ sec struct ] | ((((((.((.((.(((........))).....)))).)))))) |
| RNAwolf (ext) | [ FASTA input ] | [ sec struct ] | (((((((...((((((........))))..))...).)))))) |
| RSpredict(seed) | [ FASTA input ] | [ sec struct ] | (((((........((..............)).......))))) |
| RSpredict(20) | [ FASTA input ] | [ sec struct ] | ((((((...(((..((...........)).....))))))))) |
| Sfold | [ FASTA input ] | [ sec struct ] | ((((((.((....(((........))).......)).)))))) |
| TurboFold(20) | [ FASTA input ] | [ sec struct ] | .(((((.......(((........)))..........))))). |
| UNAFold | [ FASTA input ] | [ sec struct ] | (((((((((.((.(((........)))...)))).).)))))) |
| Vsfold4 | [ FASTA input ] | [ sec struct ] | .(((((.((.((..((...........))...)))).))))). |
| Vsfold5 | [ FASTA input ] | [ sec struct ] | .............((((......(((((......))))))))) |