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RNA Secondary Structure Atlas - RNASTRAND - SRP_00139
RNA: SRP_00139
Rfam family:
-
| ACCGGGCUUGGCAACGCUUGCCUAUAACUCAAGUGAGGGUAAGAAAAAGGGUUGGAAUUGAAAGGG | |||
| Reference structure (ext) | [ sec struct ] | (((((((..(......)..))))....((((..))))))).......................... | |
| Afold | [ FASTA input ] | [ sec struct ] | (((((.(((.......(((((((...((....))..)))))))....))).))))..........) |
| Alterna | [ FASTA input ] | [ sec struct ] | .((..((((.......(((((((.............))))))).....)))).))........... |
| CRWrnafold | [ FASTA input ] | [ sec struct ] | .(((.(((........(((((((...((....))..)))))))......))))))........... |
| CentroidFold | [ FASTA input ] | [ sec struct ] | ................(((((((.............)))))))....................... |
| CentroidHomfold‑LAST | [ FASTA input ] | [ sec struct ] | ...................(((...............))).......................... |
| ContextFold | [ FASTA input ] | [ sec struct ] | .((.(((((.......(((((((.............))))))).....)))))))..((....)). |
| Contrafold | [ FASTA input ] | [ sec struct ] | ...........((((.(((((((.....((....))))))))).......))))............ |
| Cylofold | [ FASTA input ] | [ sec struct ] | .....((((((.....[[[[[[[.....))))))..]]]]]]]....................... |
| DotKnot | [ FASTA input ] | [ sec struct ] | (((((((..(((...))).)))).[[[[[[.......)))........]]]]]]............ |
| Fold | [ FASTA input ] | [ sec struct ] | .((((.(((.......(((((((...((....))..)))))))....))).))))........... |
| HotKnots | [ FASTA input ] | [ sec struct ] | .((((.(((.......(((((((...((....))..)))))))....))).))))........... |
| IPknot | [ FASTA input ] | [ sec struct ] | ................((((((...............))))))....................... |
| MCFold (ext) | [ FASTA input ] | [ sec struct ] | (((((((((((((((((((((((((((((((..)))))))))).))))))))))))).)))))))) |
| MaxExpect | [ FASTA input ] | [ sec struct ] | .((((.(((.......(((((((....(....)...)))))))....))).))))........... |
| McQFold | [ FASTA input ] | [ sec struct ] | ...........((((.((((((.....((((..)))))))))).......))))............ |
| Pknots | [ FASTA input ] | [ sec struct ] | .(((....)))((((.(((((((.............))))))).......))))...((....)). |
| PknotsRG | [ FASTA input ] | [ sec struct ] | .((((.(((.......(((((((...((....))..)))))))....))).))))........... |
| ProbKnot | [ FASTA input ] | [ sec struct ] | .((((.(((.......(((((((.............)))))))....))).))))........... |
| RDfolder | [ FASTA input ] | [ sec struct ] | ..............((((((.........))))))............................... |
| RNASLOpt | [ FASTA input ] | [ sec struct ] | .((((....(((((...)))))....((((......))))...........))))........... |
| RNAfold | [ FASTA input ] | [ sec struct ] | .((((.(((.......(((((((...((....))..)))))))....))).))))........... |
| RNAshapes | [ FASTA input ] | [ sec struct ] | .((((.(((.......(((((((...((....))..)))))))....))).))))........... |
| RNAsubopt | [ FASTA input ] | [ sec struct ] | .((((.((((....).(((((((...((....))..)))))))....))).))))........... |
| RNAwolf (ext) | [ FASTA input ] | [ sec struct ] | (((((((((.(((((.(((..((..(.(((....))).)..))..)..)))))))))..))))))) |
| Sfold | [ FASTA input ] | [ sec struct ] | .((((.((((....).(((((((...((....))..)))))))....))).))))........... |
| UNAFold | [ FASTA input ] | [ sec struct ] | .(((..(((.......(((((((...((....))..)))))))....)))..)))........... |
| Vsfold4 | [ FASTA input ] | [ sec struct ] | .((((((.((....))...)))....((((......))))............)))........... |
| Vsfold5 | [ FASTA input ] | [ sec struct ] | .((((.((.((((..[[[))))....((((.]]]..)))).........))))))........... |