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IPknot 2D structure prediction for record PDB_00187
REFERENCE VS PREDICTED RNA SECONDARY STRUCTURE
Figure 1. Graph showing comparison of reference (upper part) and predicted by IPknot (lower part) secondary structures of RNA chain PDB_00187.
Table 1. Summary of base pair counts (true positives, true negatives, etc). Individual counts can be directly read on the graph above or can be extracted by comparing two bpseq files above.
| Base Pair Counts | |
|---|---|
| MCC | 0.47 |
| SENS | 0.40 |
| PPV | 0.55 |
| TP | 288 |
| TN | 3746425 |
| FP | 308 |
| FP CONTRA | 50 |
| FP INCONS | 190 |
| FP COMP | 68 |
| FN | 428 |
RNA 2D structure plot generated with R-Chie.