CompaRNA - on-line benchmarks of RNA structure prediction methods
Home

Methods
Datasets
Rankings
RNA 2D Atlas

Help
FAQ

Contact us
RSS feeds
Twitter

Afold 2D structure prediction for record CRW_00294



REFERENCE VS PREDICTED RNA SECONDARY STRUCTURE

Figure 1. Graph showing comparison of reference (upper part) and predicted by Afold (lower part) secondary structures of RNA chain CRW_00294.

Download Afold input in FASTA format

Download reference file

Download predicted .bpseq file



Table 1. Summary of base pair counts (true positives, true negatives, etc). Individual counts can be directly read on the graph above or can be extracted by comparing two bpseq files above.

Base Pair Counts
MCC 0.26
SENS 0.28
PPV 0.25
TP 163
TN 2620247
FP 578
FP CONTRA 92
FP INCONS 403
FP COMP 83
FN 423

^top


RNA 2D structure plot generated with R-Chie.