CompaRNA - on-line benchmarks of RNA structure prediction methods
Home

Methods
Datasets
Rankings
RNA 2D Atlas

Help
FAQ

Contact us
RSS feeds
Twitter

Fold 2D structure prediction for record CRW_00538



REFERENCE VS PREDICTED RNA SECONDARY STRUCTURE

Figure 1. Graph showing comparison of reference (upper part) and predicted by Fold (lower part) secondary structures of RNA chain CRW_00538.

Download Fold input in FASTA format

Download reference file

Download predicted .bpseq file



Table 1. Summary of base pair counts (true positives, true negatives, etc). Individual counts can be directly read on the graph above or can be extracted by comparing two bpseq files above.

Base Pair Counts
MCC 0.33
SENS 0.35
PPV 0.31
TP 104
TN 811840
FP 258
FP CONTRA 55
FP INCONS 176
FP COMP 27
FN 196

^top


RNA 2D structure plot generated with R-Chie.