CompaRNA - on-line benchmarks of RNA structure prediction methods
Home

Methods
Datasets
Rankings
RNA 2D Atlas

Help
FAQ

Contact us
RSS feeds
Twitter

RNAfold 2D structure prediction for record CRW_00294



REFERENCE VS PREDICTED RNA SECONDARY STRUCTURE

Figure 1. Graph showing comparison of reference (upper part) and predicted by RNAfold (lower part) secondary structures of RNA chain CRW_00294.

Download RNAfold input in FASTA format

Download reference file

Download predicted .bpseq file



Table 1. Summary of base pair counts (true positives, true negatives, etc). Individual counts can be directly read on the graph above or can be extracted by comparing two bpseq files above.

Base Pair Counts
MCC 0.27
SENS 0.29
PPV 0.26
TP 168
TN 2620251
FP 580
FP CONTRA 99
FP INCONS 387
FP COMP 94
FN 418

^top


RNA 2D structure plot generated with R-Chie.