CompaRNA - on-line benchmarks of RNA structure prediction methods
Home

Methods
Datasets
Rankings
RNA 2D Atlas

Help
FAQ

Contact us
RSS feeds
Twitter

RNAwolf 2D structure prediction for record ASE_00163



REFERENCE VS PREDICTED RNA SECONDARY STRUCTURE

Figure 1. Graph showing comparison of reference (upper part) and predicted by RNAwolf (lower part) secondary structures of RNA chain ASE_00163.

Download RNAwolf input in FASTA format

Download reference file

Download predicted .bpseq file



Table 1. Summary of base pair counts (true positives, true negatives, etc). Individual counts can be directly read on the graph above or can be extracted by comparing two bpseq files above.

Base Pair Counts
MCC 0.40
SENS 0.40
PPV 0.40
TP 37
TN 53208
FP 82
FP CONTRA 0
FP INCONS 56
FP COMP 26
FN 56

^top


RNA 2D structure plot generated with R-Chie.