CompaRNA - on-line benchmarks of RNA structure prediction methods
Home

Methods
Datasets
Rankings
RNA 2D Atlas

Help
FAQ

Contact us
RSS feeds
Twitter

RNAwolf 2D structure prediction for record TMR_00439



REFERENCE VS PREDICTED RNA SECONDARY STRUCTURE

Figure 1. Graph showing comparison of reference (upper part) and predicted by RNAwolf (lower part) secondary structures of RNA chain TMR_00439.

Download RNAwolf input in FASTA format

Download reference file

Download predicted .bpseq file



Table 1. Summary of base pair counts (true positives, true negatives, etc). Individual counts can be directly read on the graph above or can be extracted by comparing two bpseq files above.

Base Pair Counts
MCC 0.29
SENS 0.33
PPV 0.27
TP 33
TN 68512
FP 106
FP CONTRA 27
FP INCONS 63
FP COMP 16
FN 68

^top


RNA 2D structure plot generated with R-Chie.